Wall clock time and date at job start Mon Mar 30 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00097 * 2 1 4 4 H 1.09001 * 110.78565 * 31.80365 * 3 2 1 5 5 C 1.54938 * 110.72902 * 268.55260 * 3 2 1 6 6 N 1.48530 * 103.22859 * 204.22785 * 5 3 2 7 7 C 1.46903 * 111.00121 * 159.72085 * 6 5 3 8 8 H 1.09004 * 109.46751 * 291.86625 * 7 6 5 9 9 C 1.52995 * 109.46907 * 51.86681 * 7 6 5 10 10 C 1.50700 * 109.47286 * 171.87121 * 7 6 5 11 11 H 1.08006 * 119.99842 * 354.46514 * 10 7 6 12 12 C 1.37877 * 119.99982 * 174.47494 * 10 7 6 13 13 N 1.31514 * 120.00087 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99977 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47109 * 59.99238 * 14 12 10 16 16 H 1.48502 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46975 * 299.99200 * 14 12 10 18 18 C 1.47907 * 105.82400 * 39.20692 * 6 5 3 19 19 C 1.52999 * 109.91644 * 94.21436 * 18 6 5 20 20 C 1.52997 * 109.92093 * 215.31999 * 18 6 5 21 21 N 1.46895 * 109.47045 * 54.76876 * 20 18 6 22 22 C 1.53995 * 107.22259 * 334.77130 * 18 6 5 23 23 H 1.09007 * 109.46916 * 299.99213 * 1 2 3 24 24 H 1.09001 * 109.47790 * 59.98907 * 1 2 3 25 25 H 1.08997 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09002 * 110.66665 * 85.79437 * 5 3 2 27 27 H 1.08997 * 110.66702 * 322.66156 * 5 3 2 28 28 H 1.08999 * 109.47574 * 294.73228 * 9 7 6 29 29 H 1.09000 * 109.47157 * 54.73518 * 9 7 6 30 30 H 1.09007 * 109.47029 * 174.73203 * 9 7 6 31 31 H 0.96997 * 119.99847 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47140 * 187.17780 * 19 18 6 33 33 H 1.08999 * 109.47743 * 307.18577 * 19 18 6 34 34 H 1.09003 * 109.46595 * 67.18443 * 19 18 6 35 35 H 1.09008 * 109.46273 * 294.76930 * 20 18 6 36 36 H 1.08995 * 109.47073 * 174.77342 * 20 18 6 37 37 H 1.00903 * 110.99426 * 180.02562 * 21 20 18 38 38 H 1.00902 * 111.00295 * 303.95131 * 21 20 18 39 39 H 1.08999 * 110.31070 * 120.03673 * 22 18 6 40 40 H 1.09001 * 110.30896 * 242.20936 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3763 2.0110 0.5371 5 6 2.2667 1.7915 -1.4486 6 7 3.3557 2.7882 -1.2849 7 6 4.0620 3.0095 -2.5538 8 1 4.6159 2.1101 -2.8229 9 6 3.0474 3.3317 -3.6527 10 6 5.0202 4.1626 -2.4009 11 1 5.0333 4.7361 -1.4858 12 6 5.8799 4.4855 -3.4293 13 7 5.8640 3.7870 -4.5435 14 14 7.0671 5.9152 -3.2401 15 1 7.9669 5.6620 -2.0863 16 1 7.8764 6.0537 -4.4775 17 1 6.3021 7.1663 -3.0060 18 6 4.2656 2.2271 -0.2627 19 6 5.4022 1.4601 -0.9414 20 6 4.8390 3.3535 0.5994 21 7 3.7388 4.1441 1.1672 22 6 3.4347 1.2690 0.6108 23 1 -0.3633 0.5137 0.8901 24 1 -0.3635 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.3736 2.2616 -1.8605 27 1 2.5934 0.9649 -2.0796 28 1 2.4134 2.4626 -3.8281 29 1 2.4303 4.1747 -3.3417 30 1 3.5756 3.5875 -4.5713 31 1 6.4691 4.0140 -5.2669 32 1 5.9946 0.9444 -0.1856 33 1 4.9848 0.7310 -1.6358 34 1 6.0372 2.1587 -1.4863 35 1 5.4691 3.9966 -0.0152 36 1 5.4339 2.9264 1.4067 37 1 4.0920 4.8953 1.7409 38 1 3.1350 4.4979 0.4403 39 1 3.8447 0.2603 0.5615 40 1 3.4139 1.6198 1.6427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708940082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:14 Heat of formation + Delta-G solvation = -32.856196 kcal Electronic energy + Delta-G solvation = -19410.606049 eV Core-core repulsion = 16646.648561 eV Total energy + Delta-G solvation = -2763.957488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51169 -37.04229 -33.99134 -32.91443 -30.93858 -30.06153 -27.61917 -26.13687 -25.26874 -24.78292 -23.64803 -21.15016 -19.82006 -17.93726 -16.49771 -16.20458 -15.66608 -14.98737 -14.65124 -14.63203 -14.08440 -13.95402 -13.30431 -12.98344 -12.89710 -12.29465 -11.80692 -11.74690 -11.58298 -11.42839 -11.26042 -11.01700 -10.88313 -10.82327 -10.71778 -10.21611 -10.17402 -10.00481 -9.79061 -9.64833 -9.10639 -8.93328 -8.44173 -7.89548 -7.22668 -6.03971 -4.06574 3.27594 3.33315 3.34949 4.00451 4.38370 5.06328 5.18958 5.23202 5.28457 5.36386 5.49616 5.55154 5.62167 5.74331 5.83930 5.97773 6.10415 6.27295 6.33824 6.40012 6.41057 6.52137 6.58700 6.69028 6.78351 6.82459 7.01023 7.04543 7.19376 7.47049 7.52216 7.66491 7.80454 7.87788 8.14725 8.21435 8.29173 8.55181 8.99626 9.57087 11.03693 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030190 B = 0.008141 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.243665 B = 3438.490503 C = 3873.021824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.085 3.915 4 H 0.072 0.928 5 C 0.020 3.980 6 N -0.497 5.497 7 C 0.196 3.804 8 H 0.021 0.979 9 C -0.132 4.132 10 C -0.496 4.496 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.112 3.888 19 C -0.165 4.165 20 C 0.078 3.922 21 N -0.847 5.847 22 C -0.109 4.109 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.008 0.992 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.324 0.676 38 H 0.354 0.646 39 H 0.065 0.935 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 -3.598 8.087 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.027 3.973 4 H 0.090 0.910 5 C -0.109 4.109 6 N -0.223 5.223 7 C 0.089 3.911 8 H 0.039 0.961 9 C -0.191 4.191 10 C -0.535 4.535 11 H 0.082 0.918 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C 0.021 3.979 19 C -0.224 4.224 20 C -0.053 4.053 21 N -0.376 5.376 22 C -0.148 4.148 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.084 0.916 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.154 -3.950 8.400 11.137 hybrid contribution 1.190 1.011 -0.984 1.845 sum -4.964 -2.940 7.415 9.395 Atomic orbital electron populations 1.22693 0.81876 1.01958 0.99809 1.87881 1.19078 1.28683 1.94985 1.23206 0.94846 0.83113 0.96149 0.90951 1.23495 0.96888 0.94870 0.95630 1.64824 1.09262 1.37804 1.10425 1.19572 0.91126 0.96793 0.83566 0.96132 1.21828 0.97906 0.97392 1.01926 1.21084 1.17423 1.14115 1.00831 0.91837 1.24922 0.97358 0.96554 0.95372 1.69912 1.38179 1.39860 1.05128 0.86696 0.81092 0.83093 0.77317 1.20409 1.21402 1.20384 1.21447 0.92224 0.92263 0.91952 1.22370 0.99311 1.00694 1.00012 1.21837 0.92528 0.95248 0.95710 1.58778 1.21828 1.28933 1.28086 1.22564 0.93163 0.99070 0.99953 0.94365 0.94197 0.90308 0.91272 0.94026 0.97325 0.94942 0.90505 0.92967 0.94200 0.93366 0.89194 0.92955 0.92995 0.86648 0.83199 0.91649 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.88 101.05 1.10 1.51 16 2 O -0.39 -6.29 10.45 -35.23 -0.37 -6.66 16 3 C 0.08 1.42 3.52 -24.63 -0.09 1.33 16 4 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 5 C 0.02 0.38 4.83 -1.90 -0.01 0.37 16 6 N -0.50 -10.15 3.84 -208.51 -0.80 -10.95 16 7 C 0.20 4.67 1.37 -68.87 -0.09 4.58 16 8 H 0.02 0.56 5.53 -51.93 -0.29 0.27 16 9 C -0.13 -3.14 8.55 37.16 0.32 -2.83 16 10 C -0.50 -12.68 6.34 -34.44 -0.22 -12.90 16 11 H 0.06 1.61 5.52 -52.48 -0.29 1.32 16 12 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 13 N -0.89 -24.74 11.73 55.43 0.65 -24.09 16 14 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 C 0.11 2.10 0.50 -130.53 -0.07 2.03 16 19 C -0.17 -3.28 6.84 37.16 0.25 -3.03 16 20 C 0.08 1.40 5.33 -3.83 -0.02 1.38 16 21 N -0.85 -13.77 9.11 -10.37 -0.09 -13.87 16 22 C -0.11 -1.87 5.78 -25.14 -0.15 -2.01 16 23 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.26 7.77 -51.93 -0.40 0.86 16 27 H 0.04 0.85 7.98 -51.93 -0.41 0.43 16 28 H 0.01 0.17 7.08 -51.93 -0.37 -0.20 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 2.01 6.42 -51.92 -0.33 1.68 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.99 7.34 -51.93 -0.38 0.61 16 34 H 0.09 2.05 6.06 -51.93 -0.31 1.73 16 35 H 0.05 1.07 5.48 -51.92 -0.28 0.79 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.32 4.60 9.08 -39.29 -0.36 4.24 16 38 H 0.35 6.26 8.15 -39.29 -0.32 5.94 16 39 H 0.06 1.12 7.62 -51.93 -0.40 0.72 16 40 H 0.08 1.30 7.46 -51.93 -0.39 0.91 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -26.88 301.74 -6.76 -33.64 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.62 Total: 9.74 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 0.94 Total: -8.08 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.25 Total: -48.91 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.37 Total: -6.66 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.88 -6.76 -33.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708940082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.788 kcal (2) G-P(sol) polarization free energy of solvation -26.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds