Wall clock time and date at job start Mon Mar 30 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00097 * 2 1 4 4 H 1.09001 * 110.78565 * 31.80365 * 3 2 1 5 5 C 1.54938 * 110.72902 * 268.55260 * 3 2 1 6 6 N 1.48530 * 103.22859 * 204.22785 * 5 3 2 7 7 C 1.46903 * 111.00121 * 159.72085 * 6 5 3 8 8 H 1.09004 * 109.46751 * 291.86625 * 7 6 5 9 9 C 1.52995 * 109.46907 * 51.86681 * 7 6 5 10 10 C 1.50700 * 109.47286 * 171.87121 * 7 6 5 11 11 H 1.08006 * 119.99842 * 354.46514 * 10 7 6 12 12 C 1.37877 * 119.99982 * 174.47494 * 10 7 6 13 13 N 1.31514 * 120.00087 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99977 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47109 * 59.99238 * 14 12 10 16 16 H 1.48502 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46975 * 299.99200 * 14 12 10 18 18 C 1.47907 * 105.82400 * 39.20692 * 6 5 3 19 19 C 1.52999 * 109.91644 * 94.21436 * 18 6 5 20 20 C 1.52997 * 109.92093 * 215.31999 * 18 6 5 21 21 N 1.46895 * 109.47045 * 54.76876 * 20 18 6 22 22 C 1.53995 * 107.22259 * 334.77130 * 18 6 5 23 23 H 1.09007 * 109.46916 * 299.99213 * 1 2 3 24 24 H 1.09001 * 109.47790 * 59.98907 * 1 2 3 25 25 H 1.08997 * 109.47525 * 180.02562 * 1 2 3 26 26 H 1.09002 * 110.66665 * 85.79437 * 5 3 2 27 27 H 1.08997 * 110.66702 * 322.66156 * 5 3 2 28 28 H 1.08999 * 109.47574 * 294.73228 * 9 7 6 29 29 H 1.09000 * 109.47157 * 54.73518 * 9 7 6 30 30 H 1.09007 * 109.47029 * 174.73203 * 9 7 6 31 31 H 0.96997 * 119.99847 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47140 * 187.17780 * 19 18 6 33 33 H 1.08999 * 109.47743 * 307.18577 * 19 18 6 34 34 H 1.09003 * 109.46595 * 67.18443 * 19 18 6 35 35 H 1.09008 * 109.46273 * 294.76930 * 20 18 6 36 36 H 1.08995 * 109.47073 * 174.77342 * 20 18 6 37 37 H 1.00903 * 110.99426 * 180.02562 * 21 20 18 38 38 H 1.00902 * 111.00295 * 303.95131 * 21 20 18 39 39 H 1.08999 * 110.31070 * 120.03673 * 22 18 6 40 40 H 1.09001 * 110.30896 * 242.20936 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3763 2.0110 0.5371 5 6 2.2667 1.7915 -1.4486 6 7 3.3557 2.7882 -1.2849 7 6 4.0620 3.0095 -2.5538 8 1 4.6159 2.1101 -2.8229 9 6 3.0474 3.3317 -3.6527 10 6 5.0202 4.1626 -2.4009 11 1 5.0333 4.7361 -1.4858 12 6 5.8799 4.4855 -3.4293 13 7 5.8640 3.7870 -4.5435 14 14 7.0671 5.9152 -3.2401 15 1 7.9669 5.6620 -2.0863 16 1 7.8764 6.0537 -4.4775 17 1 6.3021 7.1663 -3.0060 18 6 4.2656 2.2271 -0.2627 19 6 5.4022 1.4601 -0.9414 20 6 4.8390 3.3535 0.5994 21 7 3.7388 4.1441 1.1672 22 6 3.4347 1.2690 0.6108 23 1 -0.3633 0.5137 0.8901 24 1 -0.3635 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.3736 2.2616 -1.8605 27 1 2.5934 0.9649 -2.0796 28 1 2.4134 2.4626 -3.8281 29 1 2.4303 4.1747 -3.3417 30 1 3.5756 3.5875 -4.5713 31 1 6.4691 4.0140 -5.2669 32 1 5.9946 0.9444 -0.1856 33 1 4.9848 0.7310 -1.6358 34 1 6.0372 2.1587 -1.4863 35 1 5.4691 3.9966 -0.0152 36 1 5.4339 2.9264 1.4067 37 1 4.0920 4.8953 1.7409 38 1 3.1350 4.4979 0.4403 39 1 3.8447 0.2603 0.5615 40 1 3.4139 1.6198 1.6427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708940082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:13 Heat of formation + Delta-G solvation = -52.465195 kcal Electronic energy + Delta-G solvation = -19411.456359 eV Core-core repulsion = 16646.648561 eV Total energy + Delta-G solvation = -2764.807798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03033 -38.33721 -35.74309 -34.51342 -32.66371 -31.56444 -29.24775 -27.38126 -27.06543 -26.40263 -25.10909 -22.76200 -21.40923 -19.56344 -18.26781 -17.69221 -17.16359 -16.44697 -16.35229 -15.85980 -15.50879 -15.46225 -14.74890 -14.68238 -14.56912 -13.79330 -13.41622 -13.21327 -13.16252 -13.07611 -12.97648 -12.66012 -12.58851 -12.32440 -12.30028 -11.99103 -11.85245 -11.53543 -11.48522 -11.23689 -10.83271 -10.46400 -10.40574 -9.30768 -8.92838 -8.06825 -6.13882 1.41887 1.42774 1.49108 2.42900 2.79309 3.23863 3.54563 3.76398 3.81121 4.04355 4.16873 4.38374 4.48901 4.56973 4.60446 4.63241 4.72229 4.81833 4.85808 4.88357 4.94190 4.96577 5.01526 5.02700 5.07272 5.19490 5.24288 5.38116 5.44843 5.58849 5.75953 5.83262 6.27988 6.34439 6.42008 6.53508 6.69436 6.90137 6.99942 7.53046 9.00368 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030190 B = 0.008141 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.243665 B = 3438.490503 C = 3873.021824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.098 3.902 4 H 0.085 0.915 5 C 0.019 3.981 6 N -0.495 5.495 7 C 0.203 3.797 8 H -0.010 1.010 9 C -0.122 4.122 10 C -0.494 4.494 11 H 0.065 0.935 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.947 3.053 15 H -0.273 1.273 16 H -0.291 1.291 17 H -0.274 1.274 18 C 0.107 3.893 19 C -0.156 4.156 20 C 0.084 3.916 21 N -0.837 5.837 22 C -0.102 4.102 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.338 0.662 38 H 0.347 0.653 39 H 0.065 0.935 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -3.418 10.110 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.040 3.960 4 H 0.103 0.897 5 C -0.109 4.109 6 N -0.221 5.221 7 C 0.096 3.904 8 H 0.007 0.993 9 C -0.181 4.181 10 C -0.532 4.532 11 H 0.083 0.917 12 C -0.186 4.186 13 N -0.564 5.564 14 Si 0.773 3.227 15 H -0.198 1.198 16 H -0.217 1.217 17 H -0.199 1.199 18 C 0.017 3.983 19 C -0.215 4.215 20 C -0.047 4.047 21 N -0.366 5.366 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.083 0.917 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.019 -3.766 10.453 13.142 hybrid contribution 1.396 0.889 -1.588 2.293 sum -5.623 -2.877 8.865 10.885 Atomic orbital electron populations 1.22951 0.79719 1.03695 1.00696 1.87860 1.21457 1.28072 1.94962 1.23019 0.94988 0.83822 0.94198 0.89701 1.23531 0.96295 0.93880 0.97242 1.64753 1.09545 1.38823 1.08933 1.19324 0.90899 0.94977 0.85199 0.99301 1.21674 0.97726 0.97971 1.00693 1.21332 1.17280 1.14068 1.00526 0.91666 1.25602 0.99018 0.98761 0.95248 1.70045 1.39081 1.41438 1.05821 0.85786 0.79282 0.80487 0.77098 1.19802 1.21706 1.19911 1.21562 0.91910 0.93015 0.91835 1.22242 0.99453 0.99749 1.00022 1.21714 0.92653 0.94695 0.95671 1.58747 1.20926 1.29452 1.27489 1.22486 0.93029 0.98424 1.00047 0.92741 0.93992 0.88289 0.90729 0.96084 0.96025 0.94590 0.93231 0.93336 0.91754 0.95041 0.92577 0.95812 0.91139 0.85055 0.83992 0.91672 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.88 113.37 1.23 1.78 16 2 O -0.40 -12.18 10.45 -148.98 -1.56 -13.73 16 3 C 0.10 3.06 3.52 31.95 0.11 3.17 16 4 H 0.09 2.47 7.89 -2.39 -0.02 2.45 16 5 C 0.02 0.71 4.83 86.65 0.42 1.13 16 6 N -0.50 -19.96 3.84 -813.60 -3.12 -23.09 16 7 C 0.20 9.87 1.37 44.17 0.06 9.93 16 8 H -0.01 -0.57 5.53 -2.38 -0.01 -0.59 16 9 C -0.12 -5.89 8.55 71.98 0.62 -5.28 16 10 C -0.49 -25.48 6.34 25.60 0.16 -25.32 16 11 H 0.07 3.31 5.52 -2.91 -0.02 3.29 16 12 C 0.01 0.63 5.30 84.65 0.45 1.08 16 13 N -0.92 -52.60 11.73 21.45 0.25 -52.35 16 14 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.11 3.91 0.50 3.67 0.00 3.92 16 19 C -0.16 -6.22 6.84 71.98 0.49 -5.72 16 20 C 0.08 2.88 5.33 86.30 0.46 3.34 16 21 N -0.84 -25.14 9.11 -186.73 -1.70 -26.84 16 22 C -0.10 -3.24 5.78 31.63 0.18 -3.06 16 23 H 0.05 1.01 8.11 -2.38 -0.02 0.99 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.63 7.77 -2.39 -0.02 2.61 16 27 H 0.02 0.86 7.98 -2.39 -0.02 0.84 16 28 H 0.02 0.93 7.08 -2.39 -0.02 0.92 16 29 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 2.65 6.42 -2.38 -0.02 2.64 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.32 7.34 -2.39 -0.02 1.30 16 34 H 0.06 2.61 6.06 -2.39 -0.01 2.60 16 35 H 0.02 0.96 5.48 -2.38 -0.01 0.94 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.34 8.68 9.08 -89.69 -0.81 7.86 16 38 H 0.35 11.54 8.15 -89.69 -0.73 10.80 16 39 H 0.06 2.09 7.62 -2.39 -0.02 2.07 16 40 H 0.09 2.72 7.46 -2.39 -0.02 2.70 16 Total: -1.00 -57.59 301.74 -0.43 -58.02 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.51 Total: 28.12 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.19 Total: -15.03 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -4.57 Total: -102.27 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.56 Total: -13.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -57.59 -0.43 -58.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708940082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.554 kcal (2) G-P(sol) polarization free energy of solvation -57.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds