Wall clock time and date at job start Mon Mar 30 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99750 * 2 1 4 4 H 1.09003 * 110.78227 * 31.79564 * 3 2 1 5 5 C 1.54939 * 110.72228 * 268.54556 * 3 2 1 6 6 N 1.48526 * 103.37720 * 204.14055 * 5 3 2 7 7 C 1.46904 * 110.99854 * 159.80371 * 6 5 3 8 8 H 1.09002 * 109.47159 * 290.85628 * 7 6 5 9 9 C 1.53002 * 109.46814 * 170.85962 * 7 6 5 10 10 C 1.50694 * 109.47076 * 50.86155 * 7 6 5 11 11 H 1.08005 * 119.99702 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00200 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00089 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00410 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46892 * 89.99802 * 14 12 10 16 16 H 1.48491 * 109.47147 * 210.00111 * 14 12 10 17 17 H 1.48500 * 109.46936 * 330.00197 * 14 12 10 18 18 C 1.48328 * 105.60665 * 39.19028 * 6 5 3 19 19 C 1.52996 * 109.88249 * 94.07482 * 18 6 5 20 20 C 1.52993 * 110.06244 * 215.24943 * 18 6 5 21 21 N 1.46899 * 109.47555 * 59.18961 * 20 18 6 22 22 C 1.54003 * 107.10827 * 334.70925 * 18 6 5 23 23 H 1.08999 * 109.47195 * 299.99609 * 1 2 3 24 24 H 1.08992 * 109.46983 * 60.00304 * 1 2 3 25 25 H 1.09008 * 109.46559 * 180.02562 * 1 2 3 26 26 H 1.08996 * 110.66919 * 322.66399 * 5 3 2 27 27 H 1.09003 * 110.66378 * 85.62724 * 5 3 2 28 28 H 1.09002 * 109.47171 * 66.66458 * 9 7 6 29 29 H 1.08998 * 109.46889 * 186.65389 * 9 7 6 30 30 H 1.08991 * 109.47726 * 306.66170 * 9 7 6 31 31 H 0.97005 * 120.00469 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47255 * 307.16370 * 19 18 6 33 33 H 1.09000 * 109.46964 * 67.17170 * 19 18 6 34 34 H 1.09002 * 109.46632 * 187.16841 * 19 18 6 35 35 H 1.08997 * 109.47449 * 179.19365 * 20 18 6 36 36 H 1.09007 * 109.47115 * 299.19279 * 20 18 6 37 37 H 1.00902 * 110.99611 * 56.05095 * 21 20 18 38 38 H 1.00899 * 111.00208 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.30567 * 242.30349 * 22 18 6 40 40 H 1.09002 * 110.38590 * 120.17692 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3762 2.0111 0.5370 5 6 2.2668 1.7914 -1.4487 6 7 3.3542 2.7904 -1.2886 7 6 4.0571 3.0117 -2.5594 8 1 4.6265 2.1194 -2.8198 9 6 5.0096 4.2004 -2.4151 10 6 3.0529 3.3015 -3.6450 11 1 1.9980 3.3192 -3.4141 12 6 3.4808 3.5442 -4.9330 13 7 4.7654 3.5222 -5.2143 14 14 2.2360 3.9028 -6.2789 15 1 1.9911 5.3658 -6.3495 16 1 2.7648 3.4259 -7.5820 17 1 0.9627 3.2019 -5.9749 18 6 4.2656 2.2273 -0.2627 19 6 5.3996 1.4562 -0.9411 20 6 4.8428 3.3511 0.6002 21 7 3.7469 4.0795 1.2531 22 6 3.4303 1.2721 0.6100 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 2.5936 0.9648 -2.0795 27 1 1.3728 2.2588 -1.8617 28 1 5.8056 3.9453 -1.7155 29 1 5.4424 4.4391 -3.3865 30 1 4.4594 5.0634 -2.0404 31 1 5.0665 3.6933 -6.1204 32 1 4.9796 0.7269 -1.6337 33 1 6.0359 2.1522 -1.4878 34 1 5.9912 0.9403 -0.1849 35 1 5.4994 2.9258 1.3592 36 1 5.4109 4.0368 -0.0287 37 1 3.1667 3.4534 1.7911 38 1 4.1027 4.8272 1.8296 39 1 3.4074 1.6245 1.6412 40 1 3.8379 0.2622 0.5648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708940083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:18 Heat of formation + Delta-G solvation = -25.470580 kcal Electronic energy + Delta-G solvation = -19322.562025 eV Core-core repulsion = 16558.924801 eV Total energy + Delta-G solvation = -2763.637224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.58430 -37.05394 -34.22140 -32.86395 -30.98446 -30.18249 -27.65471 -26.04699 -25.22397 -24.83605 -23.94358 -20.70158 -20.28320 -17.87547 -16.71641 -16.07181 -15.75714 -15.11575 -14.64396 -14.60748 -14.20808 -14.04659 -13.60866 -13.01881 -12.49368 -12.25219 -12.13842 -12.00529 -11.69830 -11.41927 -11.20734 -11.01675 -10.92632 -10.83116 -10.52303 -10.37626 -10.16889 -9.92250 -9.80837 -9.62382 -9.07431 -8.77332 -8.33834 -8.06846 -7.05951 -5.94939 -3.98675 3.34083 3.40205 3.43404 3.99052 4.46083 4.89869 5.03825 5.15147 5.25816 5.34583 5.45523 5.46294 5.63559 5.70402 5.74400 5.79899 5.88834 5.94844 6.12260 6.21144 6.29084 6.36471 6.55951 6.63455 6.75021 6.77859 6.98796 7.22424 7.24049 7.51134 7.52851 7.66474 7.80853 7.87303 7.90095 8.26706 8.43335 8.67482 9.07981 9.65663 11.11290 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.009178 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.115943 B = 3050.064177 C = 3889.272338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.080 3.920 4 H 0.070 0.930 5 C 0.038 3.962 6 N -0.476 5.476 7 C 0.198 3.802 8 H 0.013 0.987 9 C -0.130 4.130 10 C -0.501 4.501 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.094 3.906 19 C -0.168 4.168 20 C 0.082 3.918 21 N -0.828 5.828 22 C -0.115 4.115 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.010 0.990 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.259 0.741 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.083 0.917 37 H 0.329 0.671 38 H 0.329 0.671 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -3.779 11.808 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.022 3.978 4 H 0.088 0.912 5 C -0.091 4.091 6 N -0.202 5.202 7 C 0.092 3.908 8 H 0.031 0.969 9 C -0.188 4.188 10 C -0.540 4.540 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C 0.003 3.997 19 C -0.227 4.227 20 C -0.050 4.050 21 N -0.357 5.357 22 C -0.153 4.153 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.766 -3.233 11.050 11.841 hybrid contribution -0.041 -0.657 -0.250 0.704 sum -2.807 -3.890 10.800 11.818 Atomic orbital electron populations 1.22702 0.81654 1.02006 0.99957 1.87864 1.19260 1.28441 1.95060 1.23178 0.93933 0.83237 0.97433 0.91151 1.23315 0.97222 0.94657 0.93904 1.65050 1.08278 1.37503 1.09353 1.19520 0.92653 0.94381 0.84287 0.96943 1.21882 0.96991 0.98884 1.01018 1.21210 0.93239 1.47206 0.92321 0.92215 1.24904 0.95168 0.95639 0.98521 1.69889 1.13231 1.50317 1.19858 0.86571 0.81496 0.78502 0.81254 1.20746 1.21434 1.20054 1.21751 0.92774 0.91713 0.93487 1.22428 0.99017 1.00828 1.00386 1.21887 0.91752 0.95692 0.95627 1.58476 1.23363 1.15290 1.38537 1.22497 0.94543 0.99901 0.98373 0.94481 0.93846 0.90271 0.93698 0.90684 0.97161 0.89928 0.94675 0.93128 0.92210 0.90858 0.93792 0.97030 0.89844 0.85792 0.85963 0.91936 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.88 101.05 1.10 1.53 16 2 O -0.39 -6.35 10.44 -35.23 -0.37 -6.72 16 3 C 0.08 1.35 3.51 -24.87 -0.09 1.26 16 4 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 5 C 0.04 0.78 5.19 -1.90 -0.01 0.77 16 6 N -0.48 -10.21 4.61 -208.20 -0.96 -11.17 16 7 C 0.20 4.95 1.47 -68.86 -0.10 4.84 16 8 H 0.01 0.35 5.49 -51.93 -0.29 0.07 16 9 C -0.13 -3.18 7.94 37.16 0.29 -2.89 16 10 C -0.50 -13.83 8.00 -34.45 -0.28 -14.11 16 11 H 0.06 1.66 6.42 -52.48 -0.34 1.32 16 12 C 0.06 1.63 5.28 -17.82 -0.09 1.53 16 13 N -0.89 -25.58 11.29 55.43 0.63 -24.96 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.09 1.68 0.49 -130.29 -0.06 1.61 16 19 C -0.17 -3.06 6.82 37.16 0.25 -2.81 16 20 C 0.08 1.32 5.65 -3.83 -0.02 1.30 16 21 N -0.83 -12.28 9.45 -10.37 -0.10 -12.38 16 22 C -0.11 -1.82 5.49 -25.37 -0.14 -1.96 16 23 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.04 1.01 8.02 -51.93 -0.42 0.59 16 27 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 28 H 0.01 0.21 4.43 -51.93 -0.23 -0.02 16 29 H 0.08 2.24 5.92 -51.93 -0.31 1.93 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.19 7.37 -51.93 -0.38 0.80 16 33 H 0.07 1.45 5.34 -51.93 -0.28 1.17 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.08 1.51 5.38 -51.93 -0.28 1.23 16 37 H 0.33 4.42 7.05 -39.29 -0.28 4.14 16 38 H 0.33 4.09 9.08 -39.29 -0.36 3.74 16 39 H 0.06 0.86 6.31 -51.93 -0.33 0.53 16 40 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -29.40 297.90 -6.80 -36.20 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.32 Total: 6.81 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.86 Total: -8.92 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.43 Total: -48.51 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.37 Total: -6.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.40 -6.80 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708940083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.728 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds