Wall clock time and date at job start Mon Mar 30 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99750 * 2 1 4 4 H 1.09003 * 110.78227 * 31.79564 * 3 2 1 5 5 C 1.54939 * 110.72228 * 268.54556 * 3 2 1 6 6 N 1.48526 * 103.37720 * 204.14055 * 5 3 2 7 7 C 1.46904 * 110.99854 * 159.80371 * 6 5 3 8 8 H 1.09002 * 109.47159 * 290.85628 * 7 6 5 9 9 C 1.53002 * 109.46814 * 170.85962 * 7 6 5 10 10 C 1.50694 * 109.47076 * 50.86155 * 7 6 5 11 11 H 1.08005 * 119.99702 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00200 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00089 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00410 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46892 * 89.99802 * 14 12 10 16 16 H 1.48491 * 109.47147 * 210.00111 * 14 12 10 17 17 H 1.48500 * 109.46936 * 330.00197 * 14 12 10 18 18 C 1.48328 * 105.60665 * 39.19028 * 6 5 3 19 19 C 1.52996 * 109.88249 * 94.07482 * 18 6 5 20 20 C 1.52993 * 110.06244 * 215.24943 * 18 6 5 21 21 N 1.46899 * 109.47555 * 59.18961 * 20 18 6 22 22 C 1.54003 * 107.10827 * 334.70925 * 18 6 5 23 23 H 1.08999 * 109.47195 * 299.99609 * 1 2 3 24 24 H 1.08992 * 109.46983 * 60.00304 * 1 2 3 25 25 H 1.09008 * 109.46559 * 180.02562 * 1 2 3 26 26 H 1.08996 * 110.66919 * 322.66399 * 5 3 2 27 27 H 1.09003 * 110.66378 * 85.62724 * 5 3 2 28 28 H 1.09002 * 109.47171 * 66.66458 * 9 7 6 29 29 H 1.08998 * 109.46889 * 186.65389 * 9 7 6 30 30 H 1.08991 * 109.47726 * 306.66170 * 9 7 6 31 31 H 0.97005 * 120.00469 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47255 * 307.16370 * 19 18 6 33 33 H 1.09000 * 109.46964 * 67.17170 * 19 18 6 34 34 H 1.09002 * 109.46632 * 187.16841 * 19 18 6 35 35 H 1.08997 * 109.47449 * 179.19365 * 20 18 6 36 36 H 1.09007 * 109.47115 * 299.19279 * 20 18 6 37 37 H 1.00902 * 110.99611 * 56.05095 * 21 20 18 38 38 H 1.00899 * 111.00208 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.30567 * 242.30349 * 22 18 6 40 40 H 1.09002 * 110.38590 * 120.17692 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3762 2.0111 0.5370 5 6 2.2668 1.7914 -1.4487 6 7 3.3542 2.7904 -1.2886 7 6 4.0571 3.0117 -2.5594 8 1 4.6265 2.1194 -2.8198 9 6 5.0096 4.2004 -2.4151 10 6 3.0529 3.3015 -3.6450 11 1 1.9980 3.3192 -3.4141 12 6 3.4808 3.5442 -4.9330 13 7 4.7654 3.5222 -5.2143 14 14 2.2360 3.9028 -6.2789 15 1 1.9911 5.3658 -6.3495 16 1 2.7648 3.4259 -7.5820 17 1 0.9627 3.2019 -5.9749 18 6 4.2656 2.2273 -0.2627 19 6 5.3996 1.4562 -0.9411 20 6 4.8428 3.3511 0.6002 21 7 3.7469 4.0795 1.2531 22 6 3.4303 1.2721 0.6100 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 2.5936 0.9648 -2.0795 27 1 1.3728 2.2588 -1.8617 28 1 5.8056 3.9453 -1.7155 29 1 5.4424 4.4391 -3.3865 30 1 4.4594 5.0634 -2.0404 31 1 5.0665 3.6933 -6.1204 32 1 4.9796 0.7269 -1.6337 33 1 6.0359 2.1522 -1.4878 34 1 5.9912 0.9403 -0.1849 35 1 5.4994 2.9258 1.3592 36 1 5.4109 4.0368 -0.0287 37 1 3.1667 3.4534 1.7911 38 1 4.1027 4.8272 1.8296 39 1 3.4074 1.6245 1.6412 40 1 3.8379 0.2622 0.5648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708940083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:16 Heat of formation + Delta-G solvation = -48.352620 kcal Electronic energy + Delta-G solvation = -19323.554265 eV Core-core repulsion = 16558.924801 eV Total energy + Delta-G solvation = -2764.629464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07835 -38.36157 -35.95033 -34.44596 -32.76076 -31.65695 -29.28103 -27.24866 -27.15932 -26.42932 -25.34352 -22.36275 -21.91361 -19.42092 -18.37395 -17.71765 -17.29338 -16.58192 -16.30363 -15.84301 -15.68293 -15.47120 -15.09304 -14.62310 -14.08561 -13.80685 -13.66167 -13.58727 -13.17116 -12.97778 -12.92927 -12.69307 -12.54265 -12.46250 -12.18881 -12.03255 -11.85464 -11.73229 -11.46490 -11.23392 -10.80015 -10.48616 -10.37906 -9.22125 -8.81976 -8.08609 -6.19155 1.39391 1.40293 1.49839 2.42184 2.74888 3.19107 3.53731 3.67613 3.74824 3.97614 4.07679 4.30599 4.42132 4.44583 4.57754 4.59805 4.66044 4.69071 4.78199 4.85513 4.89793 4.94177 4.99129 5.01091 5.09900 5.13081 5.30707 5.32526 5.39117 5.57198 5.75769 5.88374 6.24890 6.34533 6.45430 6.50338 6.81818 6.88278 6.97127 7.49129 8.96395 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.009178 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.115943 B = 3050.064177 C = 3889.272338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.094 3.906 4 H 0.086 0.914 5 C 0.037 3.963 6 N -0.481 5.481 7 C 0.206 3.794 8 H -0.015 1.015 9 C -0.113 4.113 10 C -0.519 4.519 11 H 0.051 0.949 12 C 0.011 3.989 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.087 3.913 19 C -0.162 4.162 20 C 0.087 3.913 21 N -0.839 5.839 22 C -0.107 4.107 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.014 0.986 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.340 0.660 38 H 0.344 0.656 39 H 0.095 0.905 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -3.993 13.828 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.036 3.964 4 H 0.104 0.896 5 C -0.092 4.092 6 N -0.206 5.206 7 C 0.099 3.901 8 H 0.002 0.998 9 C -0.171 4.171 10 C -0.557 4.557 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.004 4.004 19 C -0.220 4.220 20 C -0.044 4.044 21 N -0.371 5.371 22 C -0.145 4.145 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.119 0.881 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.532 -3.448 13.094 13.994 hybrid contribution 0.172 -0.629 -0.856 1.077 sum -3.359 -4.077 12.238 13.330 Atomic orbital electron populations 1.22948 0.79761 1.03732 1.00600 1.87850 1.21397 1.27929 1.94955 1.22998 0.95068 0.83896 0.94460 0.89605 1.23265 0.96178 0.93365 0.96401 1.64944 1.08986 1.38527 1.08176 1.19259 0.92056 0.93191 0.85636 0.99766 1.21659 0.97319 0.98256 0.99882 1.21509 0.93368 1.47235 0.93625 0.93127 1.25642 0.96876 0.95569 1.00611 1.70012 1.14665 1.50872 1.20258 0.85628 0.79393 0.78411 0.78626 1.20200 1.20921 1.19653 1.21952 0.92414 0.92991 0.93013 1.22341 0.99146 0.99990 1.00557 1.21720 0.92228 0.94649 0.95782 1.58371 1.23334 1.16000 1.39433 1.22471 0.93159 0.99489 0.99387 0.92301 0.94688 0.88135 0.96792 0.92450 0.94848 0.92781 0.95582 0.93102 0.94846 0.92980 0.90466 0.94023 0.92098 0.84583 0.84244 0.88693 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.88 113.37 1.23 1.83 16 2 O -0.40 -12.44 10.44 -148.98 -1.56 -13.99 16 3 C 0.09 3.00 3.51 31.80 0.11 3.11 16 4 H 0.09 2.49 7.89 -2.39 -0.02 2.47 16 5 C 0.04 1.54 5.19 86.65 0.45 1.99 16 6 N -0.48 -20.73 4.61 -812.61 -3.75 -24.47 16 7 C 0.21 10.61 1.47 44.17 0.06 10.67 16 8 H -0.02 -0.85 5.49 -2.39 -0.01 -0.86 16 9 C -0.11 -5.68 7.94 71.98 0.57 -5.10 16 10 C -0.52 -29.50 8.00 25.60 0.20 -29.30 16 11 H 0.05 2.90 6.42 -2.91 -0.02 2.88 16 12 C 0.01 0.64 5.28 84.65 0.45 1.09 16 13 N -0.92 -53.96 11.29 21.45 0.24 -53.72 16 14 Si 0.95 45.16 29.54 68.60 2.03 47.18 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.09 2.99 0.49 3.59 0.00 2.99 16 19 C -0.16 -5.84 6.82 71.98 0.49 -5.35 16 20 C 0.09 2.61 5.65 86.30 0.49 3.10 16 21 N -0.84 -22.45 9.45 -186.73 -1.76 -24.21 16 22 C -0.11 -3.10 5.49 31.47 0.17 -2.93 16 23 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 24 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.01 0.65 8.02 -2.39 -0.02 0.63 16 27 H 0.06 2.53 7.09 -2.39 -0.02 2.51 16 28 H 0.03 1.47 4.43 -2.39 -0.01 1.46 16 29 H 0.05 3.01 5.92 -2.39 -0.01 3.00 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.03 1.35 7.37 -2.39 -0.02 1.33 16 33 H 0.05 2.07 5.34 -2.39 -0.01 2.06 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 2.10 5.38 -2.38 -0.01 2.09 16 37 H 0.34 7.81 7.05 -89.69 -0.63 7.17 16 38 H 0.34 7.51 9.08 -89.69 -0.81 6.69 16 39 H 0.09 2.16 6.31 -2.39 -0.02 2.15 16 40 H 0.07 2.17 7.62 -2.39 -0.02 2.16 16 Total: -1.00 -64.72 297.90 -0.96 -65.68 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.40 Total: 21.42 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.24 Total: -17.89 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -5.27 Total: -102.40 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.56 Total: -13.99 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.72 -0.96 -65.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708940083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.332 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds