Wall clock time and date at job start Mon Mar 30 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47203 * 2 1 4 4 C 1.53000 * 109.47088 * 239.99878 * 2 1 3 5 5 C 1.50700 * 109.47127 * 177.83660 * 4 2 1 6 6 H 1.08006 * 120.00360 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00078 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99968 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99968 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46904 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46998 * 299.99757 * 9 7 5 12 12 H 1.48500 * 109.47240 * 59.99850 * 9 7 5 13 13 N 1.46902 * 109.47311 * 119.99643 * 2 1 3 14 14 C 1.47643 * 110.99850 * 56.12375 * 13 2 1 15 15 C 1.50896 * 108.76725 * 153.50902 * 14 13 2 16 16 C 1.53621 * 111.71370 * 91.00876 * 15 14 13 17 17 O 1.44077 * 112.55416 * 318.63423 * 16 15 14 18 18 C 1.40627 * 116.73129 * 318.11417 * 17 16 15 19 19 H 1.09003 * 109.58086 * 333.97160 * 18 17 16 20 20 C 1.52999 * 109.52929 * 213.80383 * 18 17 16 21 21 N 1.46902 * 109.47453 * 65.34556 * 20 18 17 22 22 C 1.40440 * 111.00412 * 287.81990 * 13 2 1 23 23 H 1.08993 * 109.47352 * 59.99864 * 1 2 3 24 24 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46687 * 299.99881 * 1 2 3 26 26 H 1.08998 * 109.47013 * 57.84003 * 4 2 1 27 27 H 1.08995 * 109.47201 * 297.83427 * 4 2 1 28 28 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.58446 * 273.29492 * 14 13 2 30 30 H 1.08999 * 109.58525 * 33.72361 * 14 13 2 31 31 H 1.08997 * 109.03393 * 330.43228 * 15 14 13 32 32 H 1.08999 * 108.96750 * 211.54519 * 15 14 13 33 33 H 1.09002 * 108.86090 * 197.84301 * 16 15 14 34 34 H 1.08997 * 108.78437 * 79.37260 * 16 15 14 35 35 H 1.09003 * 109.47074 * 185.35201 * 20 18 17 36 36 H 1.09005 * 109.46918 * 305.34494 * 20 18 17 37 37 H 1.00897 * 110.99501 * 56.05023 * 21 20 18 38 38 H 1.00901 * 110.99398 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.03502 * 308.87290 * 22 13 2 40 40 H 1.08999 * 109.03485 * 67.80135 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5460 -0.6750 -1.2763 6 1 4.0855 -0.1802 -0.4822 7 6 4.2352 -1.2634 -2.3155 8 7 3.5783 -1.8654 -3.2827 9 14 6.1021 -1.2066 -2.3487 10 1 6.5971 -1.9066 -3.5613 11 1 6.5539 0.2077 -2.3739 12 1 6.6394 -1.8764 -1.1371 13 7 2.0197 -0.6924 1.1995 14 6 1.4717 -2.0610 1.2812 15 6 2.4291 -2.9211 2.0689 16 6 2.0928 -2.9198 3.5678 17 8 1.7295 -1.6122 4.0516 18 6 2.4976 -0.5299 3.5867 19 1 3.4933 -0.8792 3.3134 20 6 2.6107 0.5270 4.6872 21 7 3.3715 -0.0222 5.8174 22 6 1.8092 0.0844 2.3504 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6453 -0.2303 -2.1388 27 1 1.7087 -1.7595 -1.2300 28 1 4.0631 -2.2797 -4.0136 29 1 0.5041 -2.0378 1.7824 30 1 1.3557 -2.4686 0.2769 31 1 3.4421 -2.5428 1.9316 32 1 2.3778 -3.9432 1.6938 33 1 2.9612 -3.2728 4.1241 34 1 1.2617 -3.6034 3.7416 35 1 3.1242 1.4054 4.2960 36 1 1.6130 0.8093 5.0237 37 1 4.2773 -0.3508 5.5179 38 1 3.4597 0.6572 6.5581 39 1 2.2079 1.0849 2.1818 40 1 0.7383 0.1561 2.5399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709964725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:12 Heat of formation + Delta-G solvation = -42.935361 kcal Electronic energy + Delta-G solvation = -18953.670329 eV Core-core repulsion = 16189.275775 eV Total energy + Delta-G solvation = -2764.394554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62979 -36.90571 -34.67990 -32.98152 -32.03801 -31.09758 -27.69344 -27.25433 -26.02172 -23.66037 -22.66846 -21.08218 -20.36988 -18.64549 -16.82860 -16.20849 -16.08661 -15.49202 -15.07590 -14.61687 -14.45932 -14.20425 -13.80847 -13.14485 -13.02154 -12.74200 -12.33721 -12.02233 -11.81915 -11.65248 -11.47012 -11.17106 -10.91734 -10.84737 -10.67900 -10.52917 -10.24376 -9.96548 -9.89306 -9.22522 -9.04156 -8.97966 -8.68176 -8.25556 -7.36343 -5.89432 -3.86970 3.38475 3.42806 3.45635 3.96344 4.35651 4.54692 4.75374 5.11438 5.30299 5.32806 5.45097 5.48216 5.50550 5.54049 5.62213 5.76575 5.83916 5.95441 5.98524 6.02013 6.09869 6.21616 6.26485 6.31708 6.50983 6.63422 6.68894 6.78424 6.99844 7.05576 7.36647 7.56002 7.71232 7.75499 7.99798 8.12361 8.20798 8.58631 9.18543 9.74335 11.22570 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.007323 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.179605 B = 3822.827108 C = 4190.510857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.291 1.291 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.530 5.530 14 C 0.071 3.929 15 C -0.154 4.154 16 C 0.068 3.932 17 O -0.375 6.375 18 C 0.100 3.900 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.844 5.844 22 C 0.053 3.947 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.338 0.662 38 H 0.338 0.662 39 H 0.070 0.930 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 2.065 13.508 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.015 4.015 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.216 1.216 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.253 5.253 14 C -0.056 4.056 15 C -0.192 4.192 16 C -0.008 4.008 17 O -0.294 6.294 18 C 0.041 3.959 19 H 0.083 0.917 20 C -0.066 4.066 21 N -0.373 5.373 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.153 1.414 13.487 13.923 hybrid contribution 1.150 0.763 -0.468 1.457 sum -2.004 2.177 13.019 13.351 Atomic orbital electron populations 1.22501 0.99613 1.01339 1.00583 1.21864 0.90099 0.97951 0.91579 0.91498 1.19231 0.96378 0.95266 0.89897 1.21107 0.91459 1.33932 1.06172 0.92281 1.24998 0.97882 0.96040 0.95938 1.69946 1.35165 1.37828 1.11538 0.86720 0.86575 0.77935 0.77050 1.21650 1.20560 1.20473 1.59126 1.61851 1.02307 1.02013 1.21661 0.94468 0.88772 1.00677 1.22033 1.02298 1.00701 0.94137 1.22896 0.99816 0.84062 0.94034 1.87453 1.57946 1.14255 1.69737 1.21948 0.95263 0.87113 0.91579 0.91702 1.21869 0.98944 0.94687 0.91089 1.58589 1.23243 1.43797 1.11717 1.21486 0.98071 0.97204 0.91012 0.92605 0.92979 0.94174 0.96365 0.96216 0.93277 0.95223 0.89394 0.90086 0.91011 0.93762 0.90306 0.94275 0.90528 0.84951 0.84995 0.91181 0.96069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.66 37.16 0.32 -2.85 16 2 C 0.09 1.87 2.24 -67.71 -0.15 1.72 16 3 H 0.07 1.37 7.81 -51.93 -0.41 0.97 16 4 C 0.03 0.73 4.34 -27.88 -0.12 0.61 16 5 C -0.49 -13.46 8.77 -34.44 -0.30 -13.77 16 6 H 0.06 1.63 7.72 -52.48 -0.41 1.22 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.53 -10.04 3.64 -231.56 -0.84 -10.89 16 14 C 0.07 1.29 3.78 -4.47 -0.02 1.27 16 15 C -0.15 -2.50 5.41 -27.46 -0.15 -2.65 16 16 C 0.07 0.99 6.72 37.48 0.25 1.24 16 17 O -0.38 -5.99 9.70 -34.28 -0.33 -6.32 16 18 C 0.10 1.51 2.40 -26.07 -0.06 1.44 16 19 H 0.06 1.05 7.11 -51.93 -0.37 0.68 16 20 C 0.07 0.81 6.41 -3.82 -0.02 0.78 16 21 N -0.84 -9.44 9.57 -10.37 -0.10 -9.54 16 22 C 0.05 0.87 4.24 -6.51 -0.03 0.84 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.91 6.88 -51.93 -0.36 0.55 16 25 H 0.04 0.64 6.90 -51.93 -0.36 0.28 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.52 6.06 -51.93 -0.31 0.21 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.52 7.37 -51.93 -0.38 0.14 16 30 H 0.09 1.78 5.56 -51.93 -0.29 1.49 16 31 H 0.08 1.48 7.39 -51.93 -0.38 1.09 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.34 3.54 8.99 -39.29 -0.35 3.18 16 38 H 0.34 2.98 9.08 -39.29 -0.36 2.62 16 39 H 0.07 1.10 7.61 -51.93 -0.40 0.71 16 40 H 0.02 0.36 6.84 -51.93 -0.36 0.00 16 LS Contribution 306.04 15.07 4.61 4.61 Total: -1.00 -30.17 306.04 -8.14 -38.31 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.82 Total: 3.25 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.38 Total: -10.01 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.21 Total: -46.69 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.33 Total: -6.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.17 -8.14 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.623 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds