Wall clock time and date at job start Mon Mar 30 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47203 * 2 1 4 4 C 1.53000 * 109.47088 * 239.99878 * 2 1 3 5 5 C 1.50700 * 109.47127 * 177.83660 * 4 2 1 6 6 H 1.08006 * 120.00360 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00078 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99968 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99968 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46904 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46998 * 299.99757 * 9 7 5 12 12 H 1.48500 * 109.47240 * 59.99850 * 9 7 5 13 13 N 1.46902 * 109.47311 * 119.99643 * 2 1 3 14 14 C 1.47643 * 110.99850 * 56.12375 * 13 2 1 15 15 C 1.50896 * 108.76725 * 153.50902 * 14 13 2 16 16 C 1.53621 * 111.71370 * 91.00876 * 15 14 13 17 17 O 1.44077 * 112.55416 * 318.63423 * 16 15 14 18 18 C 1.40627 * 116.73129 * 318.11417 * 17 16 15 19 19 H 1.09003 * 109.58086 * 333.97160 * 18 17 16 20 20 C 1.52999 * 109.52929 * 213.80383 * 18 17 16 21 21 N 1.46902 * 109.47453 * 65.34556 * 20 18 17 22 22 C 1.40440 * 111.00412 * 287.81990 * 13 2 1 23 23 H 1.08993 * 109.47352 * 59.99864 * 1 2 3 24 24 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46687 * 299.99881 * 1 2 3 26 26 H 1.08998 * 109.47013 * 57.84003 * 4 2 1 27 27 H 1.08995 * 109.47201 * 297.83427 * 4 2 1 28 28 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.58446 * 273.29492 * 14 13 2 30 30 H 1.08999 * 109.58525 * 33.72361 * 14 13 2 31 31 H 1.08997 * 109.03393 * 330.43228 * 15 14 13 32 32 H 1.08999 * 108.96750 * 211.54519 * 15 14 13 33 33 H 1.09002 * 108.86090 * 197.84301 * 16 15 14 34 34 H 1.08997 * 108.78437 * 79.37260 * 16 15 14 35 35 H 1.09003 * 109.47074 * 185.35201 * 20 18 17 36 36 H 1.09005 * 109.46918 * 305.34494 * 20 18 17 37 37 H 1.00897 * 110.99501 * 56.05023 * 21 20 18 38 38 H 1.00901 * 110.99398 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.03502 * 308.87290 * 22 13 2 40 40 H 1.08999 * 109.03485 * 67.80135 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5460 -0.6750 -1.2763 6 1 4.0855 -0.1802 -0.4822 7 6 4.2352 -1.2634 -2.3155 8 7 3.5783 -1.8654 -3.2827 9 14 6.1021 -1.2066 -2.3487 10 1 6.5971 -1.9066 -3.5613 11 1 6.5539 0.2077 -2.3739 12 1 6.6394 -1.8764 -1.1371 13 7 2.0197 -0.6924 1.1995 14 6 1.4717 -2.0610 1.2812 15 6 2.4291 -2.9211 2.0689 16 6 2.0928 -2.9198 3.5678 17 8 1.7295 -1.6122 4.0516 18 6 2.4976 -0.5299 3.5867 19 1 3.4933 -0.8792 3.3134 20 6 2.6107 0.5270 4.6872 21 7 3.3715 -0.0222 5.8174 22 6 1.8092 0.0844 2.3504 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6453 -0.2303 -2.1388 27 1 1.7087 -1.7595 -1.2300 28 1 4.0631 -2.2797 -4.0136 29 1 0.5041 -2.0378 1.7824 30 1 1.3557 -2.4686 0.2769 31 1 3.4421 -2.5428 1.9316 32 1 2.3778 -3.9432 1.6938 33 1 2.9612 -3.2728 4.1241 34 1 1.2617 -3.6034 3.7416 35 1 3.1242 1.4054 4.2960 36 1 1.6130 0.8093 5.0237 37 1 4.2773 -0.3508 5.5179 38 1 3.4597 0.6572 6.5581 39 1 2.2079 1.0849 2.1818 40 1 0.7383 0.1561 2.5399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709964725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:11 Heat of formation + Delta-G solvation = -65.044183 kcal Electronic energy + Delta-G solvation = -18954.629039 eV Core-core repulsion = 16189.275775 eV Total energy + Delta-G solvation = -2765.353264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97557 -38.31104 -35.70918 -35.00070 -33.37256 -32.67153 -29.34794 -28.74157 -27.33668 -25.34348 -24.12125 -22.55384 -21.60782 -20.19847 -18.33004 -18.01770 -17.40553 -16.81333 -16.42637 -16.21112 -15.86507 -15.62359 -14.87584 -14.71855 -14.40283 -13.92712 -13.83545 -13.64143 -13.41174 -13.13562 -13.10641 -12.84194 -12.56563 -12.42250 -12.24942 -12.12169 -11.84665 -11.59003 -11.25574 -11.09010 -10.97051 -10.46591 -10.28333 -9.55240 -8.84212 -8.08484 -6.12722 1.41661 1.43623 1.51070 2.47523 2.80498 3.09071 3.27155 3.62895 3.93481 4.08273 4.13380 4.23292 4.26190 4.30091 4.39569 4.47562 4.56470 4.59348 4.60464 4.74125 4.79178 4.82780 4.97251 5.03864 5.10121 5.18714 5.19411 5.28790 5.39273 5.53373 5.72737 5.91810 6.20473 6.33095 6.46009 6.56994 6.63297 6.77690 7.00623 7.52693 9.03377 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.007323 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.179605 B = 3822.827108 C = 4190.510857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.495 4.495 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.289 1.289 11 H -0.271 1.271 12 H -0.272 1.272 13 N -0.543 5.543 14 C 0.076 3.924 15 C -0.148 4.148 16 C 0.072 3.928 17 O -0.385 6.385 18 C 0.105 3.895 19 H 0.052 0.948 20 C 0.072 3.928 21 N -0.851 5.851 22 C 0.053 3.947 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.061 0.939 26 H -0.009 1.009 27 H -0.001 1.001 28 H 0.258 0.742 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.342 0.658 38 H 0.352 0.648 39 H 0.077 0.923 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 2.559 15.388 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.197 1.197 13 N -0.267 5.267 14 C -0.051 4.051 15 C -0.186 4.186 16 C -0.004 4.004 17 O -0.304 6.304 18 C 0.046 3.954 19 H 0.070 0.930 20 C -0.060 4.060 21 N -0.382 5.382 22 C -0.077 4.077 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.017 0.983 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.095 0.905 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -2.696 1.923 15.396 15.748 hybrid contribution 0.983 0.599 -1.056 1.562 sum -1.714 2.522 14.339 14.660 Atomic orbital electron populations 1.22361 0.97333 1.01501 1.01780 1.21600 0.91901 0.97021 0.90329 0.91658 1.19086 0.95335 0.94331 0.91373 1.21410 0.92810 1.33263 1.05840 0.92425 1.25815 1.02635 0.95834 0.95683 1.70081 1.36967 1.38917 1.12250 0.85681 0.80943 0.78294 0.77139 1.21469 1.19603 1.19737 1.59070 1.62342 1.02782 1.02458 1.21572 0.95439 0.88661 0.99380 1.21969 1.00367 1.00650 0.95638 1.22936 1.01128 0.83979 0.92338 1.87444 1.58398 1.14814 1.69792 1.21934 0.94089 0.87505 0.91898 0.93028 1.21767 0.99461 0.94043 0.90686 1.58541 1.23495 1.44437 1.11735 1.21548 0.98408 0.97252 0.90510 0.92303 0.93330 0.92012 0.99044 0.98303 0.93340 0.94367 0.92299 0.92331 0.90034 0.92549 0.88489 0.92997 0.90437 0.84505 0.83363 0.90504 0.95890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.85 8.66 71.98 0.62 -5.22 16 2 C 0.10 4.02 2.24 44.91 0.10 4.12 16 3 H 0.07 2.66 7.81 -2.38 -0.02 2.64 16 4 C 0.04 1.85 4.34 29.85 0.13 1.98 16 5 C -0.49 -27.68 8.77 25.60 0.22 -27.45 16 6 H 0.06 3.18 7.72 -2.91 -0.02 3.16 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 9 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.54 -20.34 3.64 -886.53 -3.23 -23.57 16 14 C 0.08 2.75 3.78 85.48 0.32 3.07 16 15 C -0.15 -4.72 5.41 30.12 0.16 -4.55 16 16 C 0.07 1.94 6.72 72.19 0.48 2.43 16 17 O -0.39 -11.47 9.70 -145.56 -1.41 -12.88 16 18 C 0.11 2.96 2.40 31.02 0.07 3.04 16 19 H 0.05 1.60 7.11 -2.39 -0.02 1.58 16 20 C 0.07 1.60 6.41 86.30 0.55 2.15 16 21 N -0.85 -16.90 9.57 -186.71 -1.79 -18.69 16 22 C 0.05 1.66 4.24 87.90 0.37 2.03 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 1.68 6.88 -2.39 -0.02 1.66 16 25 H 0.06 1.85 6.90 -2.38 -0.02 1.83 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H 0.00 -0.07 6.06 -2.39 -0.01 -0.08 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.04 1.30 7.37 -2.39 -0.02 1.28 16 30 H 0.06 2.45 5.56 -2.39 -0.01 2.44 16 31 H 0.06 2.13 7.39 -2.39 -0.02 2.11 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.03 8.05 -2.39 -0.02 1.01 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.34 6.39 8.99 -89.70 -0.81 5.58 16 38 H 0.35 5.28 9.08 -89.69 -0.81 4.46 16 39 H 0.08 2.28 7.61 -2.38 -0.02 2.26 16 40 H 0.02 0.72 6.84 -2.39 -0.02 0.71 16 Total: -1.00 -64.22 306.04 -1.20 -65.42 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.59 Total: 17.84 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.51 Total: -18.15 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -4.73 Total: -99.27 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.41 Total: -12.88 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.22 -1.20 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.371 kcal (2) G-P(sol) polarization free energy of solvation -64.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds