Wall clock time and date at job start Mon Mar 30 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47015 * 120.00420 * 2 1 3 5 5 C 1.50706 * 109.46573 * 184.99846 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46897 * 109.46574 * 240.00053 * 2 1 3 14 14 C 1.40459 * 111.00511 * 306.04363 * 13 2 1 15 15 C 1.54387 * 111.45383 * 187.82579 * 14 13 2 16 16 C 1.50723 * 109.13566 * 284.57027 * 15 14 13 17 17 O 1.44229 * 112.85154 * 91.52521 * 16 15 14 18 18 C 1.43937 * 116.11049 * 318.69202 * 17 16 15 19 19 H 1.08997 * 109.00233 * 79.85936 * 18 17 16 20 20 C 1.53002 * 108.99485 * 198.70144 * 18 17 16 21 21 N 1.46891 * 109.47267 * 300.00116 * 20 18 17 22 22 C 1.47601 * 110.99989 * 74.49798 * 13 2 1 23 23 H 1.09000 * 109.46883 * 299.99545 * 1 2 3 24 24 H 1.09001 * 109.47405 * 59.99419 * 1 2 3 25 25 H 1.08999 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 64.99912 * 4 2 1 27 27 H 1.09001 * 109.47362 * 304.99190 * 4 2 1 28 28 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.08301 * 308.33782 * 14 13 2 30 30 H 1.09009 * 109.07870 * 67.32094 * 14 13 2 31 31 H 1.08999 * 109.52838 * 44.46634 * 15 14 13 32 32 H 1.08999 * 109.53012 * 164.67143 * 15 14 13 33 33 H 1.09004 * 108.80666 * 212.39488 * 16 15 14 34 34 H 1.09000 * 108.80583 * 330.76651 * 16 15 14 35 35 H 1.09005 * 109.47300 * 60.00399 * 20 18 17 36 36 H 1.08999 * 109.47049 * 179.97438 * 20 18 17 37 37 H 1.00900 * 111.00242 * 180.02562 * 21 20 18 38 38 H 1.00898 * 111.00132 * 303.94891 * 21 20 18 39 39 H 1.08998 * 109.64035 * 272.67244 * 22 13 2 40 40 H 1.08998 * 109.64255 * 33.29554 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0793 -0.0897 0.5369 7 6 4.2304 -1.1928 2.3582 8 7 3.5764 -1.8371 3.2998 9 14 6.0920 -1.0603 2.4371 10 1 6.4699 0.1623 3.1904 11 1 6.6445 -2.2555 3.1239 12 1 6.6416 -0.9827 1.0597 13 7 2.0196 -0.6925 -1.1995 14 6 1.4599 -1.9766 -1.3031 15 6 2.1100 -2.7853 -2.4463 16 6 1.5855 -2.2831 -3.7671 17 8 2.4032 -1.2389 -4.3339 18 6 2.8947 -0.2485 -3.4123 19 1 3.7609 -0.6512 -2.8873 20 6 3.3214 0.9937 -4.1969 21 7 4.3813 0.6323 -5.1476 22 6 1.8486 0.1467 -2.4016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6055 -0.2618 2.1370 28 1 4.0608 -2.2439 4.0352 29 1 1.6080 -2.5069 -0.3624 30 1 0.3907 -1.8849 -1.4947 31 1 3.1921 -2.6591 -2.4123 32 1 1.8616 -3.8406 -2.3332 33 1 1.5438 -3.1165 -4.4684 34 1 0.5768 -1.8969 -3.6207 35 1 2.4650 1.3914 -4.7416 36 1 3.6948 1.7494 -3.5059 37 1 4.6809 1.4366 -5.6782 38 1 5.1609 0.2017 -4.6734 39 1 0.8553 -0.0123 -2.8212 40 1 1.9737 1.1965 -2.1363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709964729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:18 Heat of formation + Delta-G solvation = -40.636693 kcal Electronic energy + Delta-G solvation = -18949.234842 eV Core-core repulsion = 16184.939966 eV Total energy + Delta-G solvation = -2764.294876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74248 -36.85371 -34.68619 -33.04641 -31.92122 -31.03966 -27.86078 -27.36718 -26.01896 -23.60478 -22.73214 -21.42190 -20.02815 -18.72806 -16.86573 -16.26306 -16.09805 -15.59425 -14.89439 -14.63761 -14.41679 -14.06201 -13.92107 -13.13632 -12.91366 -12.75746 -12.47360 -12.22385 -11.74337 -11.72418 -11.50779 -11.39524 -11.06174 -10.81414 -10.64295 -10.54043 -10.27948 -10.07910 -9.92339 -9.22350 -9.11992 -8.99416 -8.59044 -8.29003 -7.44909 -5.92185 -3.90197 3.35820 3.42485 3.46619 3.96070 4.33223 4.53079 4.76365 5.08726 5.15162 5.31335 5.35682 5.44605 5.51485 5.57437 5.61244 5.68421 5.81284 5.85789 5.87779 5.91247 5.98245 6.09683 6.23719 6.32371 6.45231 6.54521 6.62764 6.68953 6.94351 7.13349 7.47177 7.50873 7.55382 7.69311 7.98251 8.04756 8.14543 8.54063 9.15326 9.71605 11.19768 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.007761 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.466375 B = 3606.831582 C = 4158.248461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.527 5.527 14 C 0.069 3.931 15 C -0.155 4.155 16 C 0.063 3.937 17 O -0.377 6.377 18 C 0.096 3.904 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.842 5.842 22 C 0.034 3.966 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.091 0.909 30 H 0.013 0.987 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.336 0.664 38 H 0.341 0.659 39 H 0.039 0.961 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 3.010 -12.553 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.015 4.015 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.250 5.250 14 C -0.060 4.060 15 C -0.193 4.193 16 C -0.013 4.013 17 O -0.297 6.297 18 C 0.038 3.962 19 H 0.092 0.908 20 C -0.063 4.063 21 N -0.371 5.371 22 C -0.094 4.094 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.057 0.943 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.644 2.361 -12.863 13.576 hybrid contribution 0.650 0.729 0.949 1.362 sum -2.994 3.090 -11.914 12.667 Atomic orbital electron populations 1.22519 0.99666 1.01381 1.00623 1.21925 0.90059 0.98146 0.91376 0.91275 1.19240 0.96428 0.95352 0.89840 1.21142 0.91736 1.33184 1.06841 0.92256 1.25002 0.97991 0.95830 0.96020 1.69958 1.35245 1.36838 1.12350 0.86647 0.86408 0.77248 0.77976 1.21018 1.21533 1.19950 1.59124 1.61763 1.02180 1.01908 1.21167 0.94330 0.90617 0.99880 1.22098 1.02951 0.99806 0.94485 1.22329 0.93433 0.90181 0.95406 1.88326 1.69541 1.37196 1.34594 1.21957 0.96817 0.88406 0.89065 0.90793 1.21895 0.95327 0.94994 0.94085 1.58595 1.14948 1.33754 1.29820 1.22342 0.97263 0.98209 0.91635 0.92461 0.94353 0.92794 0.96213 0.96273 0.93285 0.89117 0.96901 0.89811 0.90714 0.90223 0.94207 0.90926 0.94098 0.85251 0.84628 0.94271 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.49 37.16 0.32 -2.77 16 2 C 0.09 1.82 2.21 -67.71 -0.15 1.67 16 3 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 4 C 0.03 0.70 4.35 -27.88 -0.12 0.58 16 5 C -0.49 -13.46 8.84 -34.44 -0.30 -13.77 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.53 -9.70 3.68 -231.61 -0.85 -10.56 16 14 C 0.07 1.22 4.13 -6.44 -0.03 1.19 16 15 C -0.16 -2.40 5.67 -27.14 -0.15 -2.56 16 16 C 0.06 0.91 6.26 36.02 0.23 1.13 16 17 O -0.38 -6.08 10.40 -35.23 -0.37 -6.44 16 18 C 0.10 1.47 2.45 -27.86 -0.07 1.40 16 19 H 0.07 1.30 7.26 -51.93 -0.38 0.92 16 20 C 0.07 0.88 6.23 -3.83 -0.02 0.86 16 21 N -0.84 -10.22 9.48 -10.37 -0.10 -10.32 16 22 C 0.03 0.53 4.21 -4.57 -0.02 0.51 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.58 7.59 -51.93 -0.39 0.18 16 25 H 0.05 0.91 6.52 -51.93 -0.34 0.57 16 26 H 0.02 0.52 6.16 -51.93 -0.32 0.20 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 29 H 0.09 1.84 5.88 -51.93 -0.31 1.53 16 30 H 0.01 0.22 6.02 -51.92 -0.31 -0.09 16 31 H 0.08 1.45 7.25 -51.93 -0.38 1.08 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.49 8.03 -51.93 -0.42 0.08 16 37 H 0.34 3.23 9.08 -39.29 -0.36 2.88 16 38 H 0.34 4.03 8.99 -39.29 -0.35 3.67 16 39 H 0.04 0.60 6.73 -51.93 -0.35 0.25 16 40 H 0.08 1.17 7.08 -51.93 -0.37 0.81 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -30.09 303.62 -8.11 -38.21 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.66 Total: 4.33 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.42 Total: -10.40 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.22 Total: -47.06 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.37 Total: -6.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.09 -8.11 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.430 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds