Wall clock time and date at job start Mon Mar 30 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47015 * 120.00420 * 2 1 3 5 5 C 1.50706 * 109.46573 * 184.99846 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46897 * 109.46574 * 240.00053 * 2 1 3 14 14 C 1.40459 * 111.00511 * 306.04363 * 13 2 1 15 15 C 1.54387 * 111.45383 * 187.82579 * 14 13 2 16 16 C 1.50723 * 109.13566 * 284.57027 * 15 14 13 17 17 O 1.44229 * 112.85154 * 91.52521 * 16 15 14 18 18 C 1.43937 * 116.11049 * 318.69202 * 17 16 15 19 19 H 1.08997 * 109.00233 * 79.85936 * 18 17 16 20 20 C 1.53002 * 108.99485 * 198.70144 * 18 17 16 21 21 N 1.46891 * 109.47267 * 300.00116 * 20 18 17 22 22 C 1.47601 * 110.99989 * 74.49798 * 13 2 1 23 23 H 1.09000 * 109.46883 * 299.99545 * 1 2 3 24 24 H 1.09001 * 109.47405 * 59.99419 * 1 2 3 25 25 H 1.08999 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 64.99912 * 4 2 1 27 27 H 1.09001 * 109.47362 * 304.99190 * 4 2 1 28 28 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.08301 * 308.33782 * 14 13 2 30 30 H 1.09009 * 109.07870 * 67.32094 * 14 13 2 31 31 H 1.08999 * 109.52838 * 44.46634 * 15 14 13 32 32 H 1.08999 * 109.53012 * 164.67143 * 15 14 13 33 33 H 1.09004 * 108.80666 * 212.39488 * 16 15 14 34 34 H 1.09000 * 108.80583 * 330.76651 * 16 15 14 35 35 H 1.09005 * 109.47300 * 60.00399 * 20 18 17 36 36 H 1.08999 * 109.47049 * 179.97438 * 20 18 17 37 37 H 1.00900 * 111.00242 * 180.02562 * 21 20 18 38 38 H 1.00898 * 111.00132 * 303.94891 * 21 20 18 39 39 H 1.08998 * 109.64035 * 272.67244 * 22 13 2 40 40 H 1.08998 * 109.64255 * 33.29554 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0793 -0.0897 0.5369 7 6 4.2304 -1.1928 2.3582 8 7 3.5764 -1.8371 3.2998 9 14 6.0920 -1.0603 2.4371 10 1 6.4699 0.1623 3.1904 11 1 6.6445 -2.2555 3.1239 12 1 6.6416 -0.9827 1.0597 13 7 2.0196 -0.6925 -1.1995 14 6 1.4599 -1.9766 -1.3031 15 6 2.1100 -2.7853 -2.4463 16 6 1.5855 -2.2831 -3.7671 17 8 2.4032 -1.2389 -4.3339 18 6 2.8947 -0.2485 -3.4123 19 1 3.7609 -0.6512 -2.8873 20 6 3.3214 0.9937 -4.1969 21 7 4.3813 0.6323 -5.1476 22 6 1.8486 0.1467 -2.4016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6055 -0.2618 2.1370 28 1 4.0608 -2.2439 4.0352 29 1 1.6080 -2.5069 -0.3624 30 1 0.3907 -1.8849 -1.4947 31 1 3.1921 -2.6591 -2.4123 32 1 1.8616 -3.8406 -2.3332 33 1 1.5438 -3.1165 -4.4684 34 1 0.5768 -1.8969 -3.6207 35 1 2.4650 1.3914 -4.7416 36 1 3.6948 1.7494 -3.5059 37 1 4.6809 1.4366 -5.6782 38 1 5.1609 0.2017 -4.6734 39 1 0.8553 -0.0123 -2.8212 40 1 1.9737 1.1965 -2.1363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709964729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:18 Heat of formation + Delta-G solvation = -63.018600 kcal Electronic energy + Delta-G solvation = -18950.205394 eV Core-core repulsion = 16184.939966 eV Total energy + Delta-G solvation = -2765.265428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07692 -38.22797 -35.76221 -35.01403 -33.36720 -32.45478 -29.43301 -28.95494 -27.28035 -25.31256 -24.12342 -22.88076 -21.24199 -20.24074 -18.35659 -18.06785 -17.43115 -16.92721 -16.45728 -16.03041 -15.90699 -15.28317 -15.11564 -14.66920 -14.25039 -14.07098 -13.92033 -13.67898 -13.48925 -13.23279 -12.99401 -12.76341 -12.66198 -12.43556 -12.32808 -12.12664 -11.86073 -11.55064 -11.39363 -11.06663 -10.96555 -10.48011 -10.35062 -9.52747 -8.87028 -8.10754 -6.15223 1.40293 1.41402 1.52145 2.46124 2.82387 2.98635 3.25251 3.71134 3.92790 3.94182 4.05352 4.16093 4.22530 4.27944 4.44215 4.46736 4.52311 4.54101 4.64413 4.66207 4.74542 4.80842 4.90785 5.07183 5.12660 5.16224 5.19882 5.27742 5.34573 5.51209 5.68116 5.89740 6.17918 6.30436 6.38190 6.52061 6.65042 6.72058 6.98642 7.50548 9.01267 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.007761 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.466375 B = 3606.831582 C = 4158.248461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.497 4.497 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.545 5.545 14 C 0.073 3.927 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.388 6.388 18 C 0.100 3.900 19 H 0.047 0.953 20 C 0.073 3.927 21 N -0.850 5.850 22 C 0.040 3.960 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.050 0.950 26 H -0.003 1.003 27 H -0.007 1.007 28 H 0.258 0.742 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.350 0.650 38 H 0.342 0.658 39 H 0.049 0.951 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 3.815 -14.378 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.535 4.535 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.268 5.268 14 C -0.056 4.056 15 C -0.185 4.185 16 C -0.012 4.012 17 O -0.308 6.308 18 C 0.042 3.958 19 H 0.065 0.935 20 C -0.058 4.058 21 N -0.381 5.381 22 C -0.087 4.087 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.068 0.932 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.625 3.183 -14.712 15.483 hybrid contribution 0.630 0.454 1.510 1.698 sum -2.995 3.637 -13.202 14.017 Atomic orbital electron populations 1.22380 0.97195 1.01608 1.01972 1.21636 0.91993 0.97170 0.89933 0.91331 1.19099 0.95248 0.94401 0.91562 1.21468 0.93213 1.32428 1.06440 0.92420 1.25828 1.02678 0.95689 0.95837 1.70087 1.37035 1.38010 1.13074 0.85618 0.80869 0.77344 0.78204 1.20132 1.21429 1.19206 1.59007 1.62475 1.02795 1.02542 1.21089 0.95375 0.90233 0.98954 1.22036 1.01269 1.00637 0.94570 1.22406 0.93310 0.90547 0.94964 1.88316 1.69814 1.37620 1.35063 1.21894 0.95632 0.89118 0.89195 0.93507 1.21836 0.95918 0.93798 0.94285 1.58570 1.14982 1.34715 1.29821 1.22350 0.97905 0.98175 0.90295 0.92306 0.91748 0.93118 0.98476 0.98908 0.93312 0.92741 0.95485 0.92086 0.88920 0.88082 0.93411 0.90064 0.93206 0.83593 0.84590 0.93247 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 8.49 71.98 0.61 -4.98 16 2 C 0.10 3.94 2.21 44.92 0.10 4.03 16 3 H 0.07 2.68 7.68 -2.39 -0.02 2.67 16 4 C 0.03 1.74 4.35 29.85 0.13 1.87 16 5 C -0.50 -27.77 8.84 25.60 0.23 -27.55 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 9 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.54 -19.75 3.68 -886.66 -3.27 -23.02 16 14 C 0.07 2.53 4.13 87.94 0.36 2.90 16 15 C -0.15 -4.42 5.67 30.33 0.17 -4.25 16 16 C 0.06 1.69 6.26 71.24 0.45 2.14 16 17 O -0.39 -11.71 10.40 -148.98 -1.55 -13.26 16 18 C 0.10 2.91 2.45 29.86 0.07 2.98 16 19 H 0.05 1.63 7.26 -2.39 -0.02 1.61 16 20 C 0.07 1.72 6.23 86.31 0.54 2.26 16 21 N -0.85 -18.93 9.48 -186.73 -1.77 -20.70 16 22 C 0.04 1.18 4.21 85.43 0.36 1.54 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 1.76 7.59 -2.39 -0.02 1.74 16 25 H 0.05 1.66 6.52 -2.39 -0.02 1.65 16 26 H 0.00 -0.16 6.16 -2.39 -0.01 -0.18 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.05 2.28 5.88 -2.39 -0.01 2.27 16 30 H 0.03 0.87 6.02 -2.38 -0.01 0.85 16 31 H 0.06 2.12 7.25 -2.39 -0.02 2.10 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.05 1.21 6.60 -2.39 -0.02 1.19 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.05 1.09 8.03 -2.39 -0.02 1.07 16 37 H 0.35 5.95 9.08 -89.69 -0.81 5.14 16 38 H 0.34 7.58 8.99 -89.70 -0.81 6.77 16 39 H 0.05 1.37 6.73 -2.39 -0.02 1.35 16 40 H 0.09 2.45 7.08 -2.39 -0.02 2.43 16 Total: -1.00 -64.79 303.62 -1.38 -66.17 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.59 Total: 19.56 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.48 Total: -18.85 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -4.75 Total: -100.79 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -1.55 Total: -13.26 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.79 -1.38 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.150 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds