Wall clock time and date at job start Mon Mar 30 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46531 * 2 1 4 4 C 1.52997 * 109.47264 * 119.99499 * 2 1 3 5 5 C 1.50696 * 109.46825 * 64.87418 * 4 2 1 6 6 H 1.08005 * 120.00145 * 355.17680 * 5 4 2 7 7 C 1.37878 * 120.00101 * 175.17894 * 5 4 2 8 8 N 1.31517 * 120.00127 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99823 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47067 * 269.99863 * 9 7 5 11 11 H 1.48497 * 109.47146 * 29.99995 * 9 7 5 12 12 H 1.48497 * 109.47251 * 150.00107 * 9 7 5 13 13 N 1.46898 * 109.47317 * 240.00252 * 2 1 3 14 14 C 1.47635 * 110.99955 * 178.19771 * 13 2 1 15 15 C 1.50900 * 108.76933 * 153.50714 * 14 13 2 16 16 C 1.53615 * 111.71851 * 91.00991 * 15 14 13 17 17 O 1.44095 * 112.54986 * 318.63965 * 16 15 14 18 18 C 1.40619 * 116.72719 * 318.10564 * 17 16 15 19 19 H 1.09007 * 109.59163 * 333.98302 * 18 17 16 20 20 C 1.52997 * 109.53072 * 213.80007 * 18 17 16 21 21 N 1.46905 * 109.46860 * 65.35625 * 20 18 17 22 22 C 1.40437 * 111.00159 * 49.89579 * 13 2 1 23 23 H 1.09003 * 109.46531 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47543 * 300.00236 * 1 2 3 25 25 H 1.09004 * 109.46990 * 60.00690 * 1 2 3 26 26 H 1.08993 * 109.47241 * 304.87352 * 4 2 1 27 27 H 1.09003 * 109.47159 * 184.87230 * 4 2 1 28 28 H 0.97003 * 119.99965 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.59007 * 273.29211 * 14 13 2 30 30 H 1.08999 * 109.59267 * 33.72424 * 14 13 2 31 31 H 1.08999 * 109.02791 * 330.43372 * 15 14 13 32 32 H 1.09002 * 108.96937 * 211.54908 * 15 14 13 33 33 H 1.08998 * 108.87013 * 197.84939 * 16 15 14 34 34 H 1.08998 * 108.78704 * 79.36949 * 16 15 14 35 35 H 1.08996 * 109.47094 * 185.35247 * 20 18 17 36 36 H 1.08996 * 109.47015 * 305.35672 * 20 18 17 37 37 H 1.00902 * 110.99826 * 180.02562 * 21 20 18 38 38 H 1.00903 * 110.99770 * 303.95685 * 21 20 18 39 39 H 1.08999 * 109.03545 * 308.86920 * 22 13 2 40 40 H 1.09002 * 109.04076 * 67.73593 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6387 -2.1725 1.1905 6 1 1.0104 -2.5269 0.3866 7 6 2.0734 -3.0479 2.1629 8 7 1.7227 -4.3144 2.1118 9 14 3.1605 -2.4351 3.5528 10 1 4.5865 -2.5569 3.1565 11 1 2.8456 -1.0119 3.8369 12 1 2.9138 -3.2491 4.7700 13 7 2.0197 -0.6924 -1.1994 14 6 3.4949 -0.6747 -1.2554 15 6 3.9651 -1.8687 -2.0492 16 6 4.1114 -1.5370 -3.5420 17 8 3.0315 -0.7202 -4.0350 18 6 1.7371 -1.0511 -3.5964 19 1 1.6987 -2.1090 -3.3361 20 6 0.7298 -0.7618 -4.7111 21 7 0.9869 -1.6563 -5.8477 22 6 1.3912 -0.2020 -2.3556 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6072 -0.2601 2.1370 27 1 3.1265 -0.6461 1.2940 28 1 2.0289 -4.9304 2.7958 29 1 3.8312 0.2419 -1.7401 30 1 3.8996 -0.7256 -0.2446 31 1 3.2444 -2.6782 -1.9340 32 1 4.9302 -2.1944 -1.6612 33 1 4.1367 -2.4675 -4.1091 34 1 5.0516 -1.0068 -3.6933 35 1 -0.2812 -0.9281 -4.3393 36 1 0.8325 0.2743 -5.0336 37 1 0.3344 -1.4845 -6.5979 38 1 1.9391 -1.5675 -6.1695 39 1 0.3116 -0.2145 -2.2059 40 1 1.7132 0.8252 -2.5268 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709964731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:22 Heat of formation + Delta-G solvation = -35.127282 kcal Electronic energy + Delta-G solvation = -19058.965368 eV Core-core repulsion = 16294.909398 eV Total energy + Delta-G solvation = -2764.055970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63678 -36.95826 -34.63643 -33.02229 -32.15159 -31.11676 -27.93946 -27.84588 -25.51539 -23.85424 -22.44204 -20.94014 -19.99772 -18.89793 -16.79133 -16.72200 -16.19978 -15.42212 -15.14111 -14.88610 -14.29624 -13.91581 -13.85410 -13.57090 -12.91006 -12.56249 -12.35702 -12.20552 -11.76976 -11.56289 -11.39330 -11.28441 -10.97760 -10.84881 -10.73606 -10.37743 -10.15878 -9.96531 -9.70550 -9.45691 -9.10476 -8.95759 -8.67514 -8.40135 -7.37405 -5.89200 -3.82480 3.34416 3.43234 3.45445 3.92944 4.37639 4.54809 4.73778 5.11050 5.29002 5.36165 5.42642 5.44975 5.52686 5.60694 5.70926 5.78590 5.85607 5.90289 5.98634 6.07288 6.13631 6.21084 6.28818 6.32615 6.54355 6.58650 6.76972 6.80489 7.06063 7.10855 7.15382 7.31052 7.43624 7.61650 7.82058 8.01096 8.16545 8.74943 9.25689 9.74140 11.24447 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.007162 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.799858 B = 3908.572053 C = 4137.427371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 H 0.012 0.988 4 C -0.011 4.011 5 C -0.481 4.481 6 H 0.084 0.916 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.869 3.131 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.291 1.291 13 N -0.527 5.527 14 C 0.073 3.927 15 C -0.152 4.152 16 C 0.069 3.931 17 O -0.393 6.393 18 C 0.096 3.904 19 H 0.079 0.921 20 C 0.068 3.932 21 N -0.848 5.848 22 C 0.049 3.951 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.017 0.983 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.338 0.662 38 H 0.344 0.656 39 H 0.084 0.916 40 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 8.399 -11.859 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.003 4.003 3 H 0.030 0.970 4 C -0.049 4.049 5 C -0.519 4.519 6 H 0.102 0.898 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.697 3.303 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.217 1.217 13 N -0.251 5.251 14 C -0.054 4.054 15 C -0.190 4.190 16 C -0.007 4.007 17 O -0.312 6.312 18 C 0.037 3.963 19 H 0.097 0.903 20 C -0.063 4.063 21 N -0.378 5.378 22 C -0.082 4.082 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.102 0.898 40 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 1.233 7.339 -11.331 13.556 hybrid contribution 1.106 1.646 0.473 2.038 sum 2.338 8.985 -10.858 14.286 Atomic orbital electron populations 1.21919 0.95246 1.03271 0.99363 1.21445 0.94926 0.92855 0.91041 0.96967 1.19751 0.95350 0.97852 0.91915 1.21009 1.30504 0.90323 1.10063 0.89789 1.25008 0.96353 0.94883 0.97574 1.69908 1.46703 1.03100 1.35108 0.86969 0.81459 0.79065 0.82812 1.20702 1.19475 1.21700 1.58878 1.05778 1.58802 1.01618 1.21638 0.87432 0.95720 1.00570 1.21990 1.02693 1.00622 0.93739 1.22911 0.88920 0.94378 0.94490 1.87343 1.14968 1.57947 1.70986 1.22048 0.82128 1.00155 0.91952 0.90274 1.21848 0.98704 0.94074 0.91671 1.58682 1.09047 1.58536 1.11524 1.21610 1.00298 0.95492 0.90763 0.90365 0.93059 0.94387 0.96497 0.97139 0.93155 0.95543 0.89787 0.89356 0.91020 0.93471 0.90395 0.89860 0.95245 0.85066 0.84294 0.89828 0.96901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.38 37.16 0.31 -2.25 16 2 C 0.10 2.07 2.38 -67.72 -0.16 1.91 16 3 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 4 C -0.01 -0.26 3.45 -27.89 -0.10 -0.36 16 5 C -0.48 -13.15 8.57 -34.44 -0.30 -13.45 16 6 H 0.08 2.51 6.98 -52.48 -0.37 2.15 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -27.89 13.96 55.43 0.77 -27.11 16 9 Si 0.87 21.67 27.38 -169.99 -4.65 17.02 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.50 6.68 56.52 0.38 -6.12 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 N -0.53 -10.07 3.31 -231.56 -0.77 -10.84 16 14 C 0.07 1.33 5.15 -4.47 -0.02 1.31 16 15 C -0.15 -2.53 5.41 -27.47 -0.15 -2.68 16 16 C 0.07 0.98 6.72 37.48 0.25 1.23 16 17 O -0.39 -6.02 9.28 -34.26 -0.32 -6.34 16 18 C 0.10 1.48 2.46 -26.06 -0.06 1.42 16 19 H 0.08 1.41 7.11 -51.92 -0.37 1.04 16 20 C 0.07 0.87 6.45 -3.82 -0.02 0.85 16 21 N -0.85 -9.90 9.62 -10.37 -0.10 -10.00 16 22 C 0.05 0.81 4.17 -6.50 -0.03 0.78 16 23 H 0.08 1.61 6.84 -51.93 -0.36 1.26 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.59 6.16 -51.93 -0.32 0.27 16 26 H 0.02 0.40 7.53 -51.93 -0.39 0.01 16 27 H 0.01 0.25 5.42 -51.93 -0.28 -0.03 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.03 0.46 7.64 -51.93 -0.40 0.06 16 30 H 0.08 1.65 5.66 -51.93 -0.29 1.36 16 31 H 0.09 1.72 7.39 -51.93 -0.38 1.34 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.34 3.11 9.08 -39.29 -0.36 2.75 16 38 H 0.34 3.93 8.57 -39.29 -0.34 3.59 16 39 H 0.08 1.33 5.27 -51.93 -0.27 1.06 16 40 H 0.01 0.22 8.09 -51.93 -0.42 -0.20 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -30.20 300.03 -7.58 -37.78 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.66 Total: 4.56 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.37 Total: -9.59 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.09 Total: -47.95 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.32 Total: -6.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.20 -7.58 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.654 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds