Wall clock time and date at job start Mon Mar 30 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 N 1.46895 * 109.47126 * 179.97438 * 15 14 13 17 17 C 1.47012 * 111.00300 * 293.63249 * 16 15 14 18 18 C 1.53092 * 109.26251 * 177.60927 * 17 16 15 19 19 O 1.43017 * 109.25990 * 56.84692 * 18 17 16 20 20 C 1.43019 * 113.73509 * 301.33241 * 19 18 17 21 21 C 1.47015 * 110.99904 * 169.99577 * 16 15 14 22 22 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 23 23 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 25 25 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 26 26 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 27 27 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 28 28 H 1.00896 * 111.00080 * 151.04437 * 13 2 1 29 29 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 30 30 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 31 31 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 32 32 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 33 33 H 1.09003 * 109.50462 * 297.54526 * 17 16 15 34 34 H 1.09006 * 109.50574 * 57.66944 * 17 16 15 35 35 H 1.09003 * 109.50948 * 296.91562 * 18 17 16 36 36 H 1.08999 * 109.54390 * 176.80170 * 18 17 16 37 37 H 1.08990 * 109.51015 * 298.73091 * 20 19 18 38 38 H 1.09010 * 109.53737 * 178.62426 * 20 19 18 39 39 H 1.08996 * 109.50637 * 302.32775 * 21 16 15 40 40 H 1.09005 * 109.50575 * 62.41530 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 7 2.6595 0.3825 4.7214 17 6 3.6754 1.4237 4.5094 18 6 3.6665 2.3877 5.6986 19 8 3.8892 1.6515 6.9043 20 6 2.9176 0.6295 7.1426 21 6 2.9191 -0.3524 5.9680 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 6.0246 -1.4984 -3.1541 28 1 2.9172 -1.1205 1.0288 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6164 2.5525 31 1 1.9200 -1.3566 3.8031 32 1 3.5916 -0.9262 3.3684 33 1 4.6585 0.9608 4.4234 34 1 3.4493 1.9718 3.5947 35 1 2.7008 2.8905 5.7524 36 1 4.4561 3.1286 5.5734 37 1 1.9303 1.0810 7.2383 38 1 3.1654 0.0980 8.0616 39 1 2.1409 -1.1007 6.1182 40 1 3.8898 -0.8443 5.9051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:58 Heat of formation + Delta-G solvation = -49.498719 kcal Electronic energy + Delta-G solvation = -17854.223714 eV Core-core repulsion = 15089.544552 eV Total energy + Delta-G solvation = -2764.679162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64037 -37.10237 -35.64464 -32.76690 -31.49200 -31.13633 -28.33777 -27.84028 -25.29517 -24.12702 -22.70733 -21.25775 -20.40624 -19.40034 -16.84435 -16.63216 -16.27942 -15.53649 -15.16979 -15.05046 -14.82041 -14.36878 -14.28814 -13.59601 -13.28268 -12.63508 -12.52559 -12.36166 -11.97584 -11.76415 -11.56684 -11.49405 -11.41977 -11.15888 -10.84029 -10.75871 -10.55122 -10.24281 -9.84676 -9.75952 -9.47343 -9.23556 -8.58504 -8.44604 -7.72161 -6.09858 -4.08537 3.29365 3.36742 3.40877 3.61344 3.78312 4.41887 4.72809 4.84334 4.91394 5.01124 5.07293 5.15816 5.29304 5.35308 5.42027 5.46942 5.54515 5.66869 5.74309 5.79261 5.85483 5.87961 6.03927 6.18613 6.21983 6.23836 6.44988 6.70378 6.78021 6.88790 6.94593 7.00864 7.18001 7.26490 7.73164 7.87733 8.19628 8.45023 8.91539 9.52949 11.03146 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033717 B = 0.004548 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.233447 B = 6155.288557 C = 6565.713388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.098 3.902 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.524 4.524 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.685 5.685 14 C 0.065 3.935 15 C 0.058 3.942 16 N -0.536 5.536 17 C 0.012 3.988 18 C 0.065 3.935 19 O -0.389 6.389 20 C 0.065 3.935 21 C 0.018 3.982 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.263 0.737 28 H 0.356 0.644 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 3.512 15.417 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.011 4.011 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.215 1.215 13 N -0.320 5.320 14 C -0.065 4.065 15 C -0.070 4.070 16 N -0.262 5.262 17 C -0.116 4.116 18 C -0.012 4.012 19 O -0.307 6.307 20 C -0.012 4.012 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.177 0.823 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.447 3.479 15.636 17.665 hybrid contribution 1.068 -0.462 -1.347 1.780 sum -6.379 3.016 14.289 15.937 Atomic orbital electron populations 1.21827 0.96576 1.01353 0.99819 1.21369 0.93262 0.95987 0.90524 0.94766 1.19776 0.96980 0.95987 0.92732 1.21074 0.89912 1.35312 1.09920 0.91396 1.25011 0.94682 0.95696 0.97872 1.69917 1.06656 1.45298 1.32207 0.86739 0.80421 0.80546 0.81343 1.20218 1.18989 1.21502 1.60506 1.34919 1.32201 1.04349 1.21864 1.00255 0.94043 0.90302 1.22101 1.00241 0.94872 0.89771 1.62163 1.47153 1.14212 1.02674 1.22869 0.94116 0.94817 0.99815 1.22676 1.01880 0.93339 0.83323 1.87968 1.51737 1.49217 1.41797 1.22651 0.92714 0.88853 0.97030 1.22769 1.00982 0.96720 0.90616 0.93322 0.92672 0.94025 0.96044 0.96056 0.92708 0.82301 0.95809 0.91134 0.89934 0.94571 0.93798 0.89090 0.92310 0.88503 0.92341 0.88642 0.89598 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.41 37.16 0.35 -1.99 16 2 C 0.10 1.97 2.59 -67.71 -0.18 1.79 16 3 H 0.03 0.72 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.40 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.48 8.67 -34.44 -0.30 -14.78 16 6 H 0.07 2.01 7.73 -52.49 -0.41 1.60 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.69 -12.92 6.31 -106.72 -0.67 -13.59 16 14 C 0.07 1.05 5.42 -3.82 -0.02 1.03 16 15 C 0.06 0.82 5.22 -3.82 -0.02 0.80 16 16 N -0.54 -6.86 4.73 -234.31 -1.11 -7.97 16 17 C 0.01 0.15 5.44 -3.72 -0.02 0.13 16 18 C 0.06 0.71 7.01 37.20 0.26 0.97 16 19 O -0.39 -4.72 10.83 -35.23 -0.38 -5.10 16 20 C 0.06 0.64 7.01 37.21 0.26 0.90 16 21 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 25 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.36 7.46 7.21 -39.29 -0.28 7.17 16 29 H 0.02 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 31 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 32 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -29.84 312.46 -8.34 -38.18 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.11 Total: 3.05 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 0.12 Total: -9.60 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -1.01 Total: -48.17 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.84 -8.34 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.321 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds