Wall clock time and date at job start Mon Mar 30 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 N 1.46895 * 109.47126 * 179.97438 * 15 14 13 17 17 C 1.47012 * 111.00300 * 293.63249 * 16 15 14 18 18 C 1.53092 * 109.26251 * 177.60927 * 17 16 15 19 19 O 1.43017 * 109.25990 * 56.84692 * 18 17 16 20 20 C 1.43019 * 113.73509 * 301.33241 * 19 18 17 21 21 C 1.47015 * 110.99904 * 169.99577 * 16 15 14 22 22 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 23 23 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 25 25 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 26 26 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 27 27 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 28 28 H 1.00896 * 111.00080 * 151.04437 * 13 2 1 29 29 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 30 30 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 31 31 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 32 32 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 33 33 H 1.09003 * 109.50462 * 297.54526 * 17 16 15 34 34 H 1.09006 * 109.50574 * 57.66944 * 17 16 15 35 35 H 1.09003 * 109.50948 * 296.91562 * 18 17 16 36 36 H 1.08999 * 109.54390 * 176.80170 * 18 17 16 37 37 H 1.08990 * 109.51015 * 298.73091 * 20 19 18 38 38 H 1.09010 * 109.53737 * 178.62426 * 20 19 18 39 39 H 1.08996 * 109.50637 * 302.32775 * 21 16 15 40 40 H 1.09005 * 109.50575 * 62.41530 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 7 2.6595 0.3825 4.7214 17 6 3.6754 1.4237 4.5094 18 6 3.6665 2.3877 5.6986 19 8 3.8892 1.6515 6.9043 20 6 2.9176 0.6295 7.1426 21 6 2.9191 -0.3524 5.9680 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 6.0246 -1.4984 -3.1541 28 1 2.9172 -1.1205 1.0288 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6164 2.5525 31 1 1.9200 -1.3566 3.8031 32 1 3.5916 -0.9262 3.3684 33 1 4.6585 0.9608 4.4234 34 1 3.4493 1.9718 3.5947 35 1 2.7008 2.8905 5.7524 36 1 4.4561 3.1286 5.5734 37 1 1.9303 1.0810 7.2383 38 1 3.1654 0.0980 8.0616 39 1 2.1409 -1.1007 6.1182 40 1 3.8898 -0.8443 5.9051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709990934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:58 Heat of formation + Delta-G solvation = -72.002681 kcal Electronic energy + Delta-G solvation = -17855.199559 eV Core-core repulsion = 15089.544552 eV Total energy + Delta-G solvation = -2765.655007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58901 -38.53487 -36.83546 -34.77061 -32.92376 -32.14414 -29.90289 -29.29199 -26.46759 -25.04523 -24.56651 -22.49953 -21.42864 -21.02670 -18.98210 -17.62438 -17.25243 -16.76712 -16.51456 -16.24278 -16.03075 -15.89172 -15.54650 -14.85601 -14.74355 -14.32560 -14.06328 -13.52159 -13.42677 -13.29971 -13.03820 -12.65354 -12.63513 -12.43076 -12.37310 -12.01792 -11.86844 -11.76106 -11.55081 -11.28358 -11.21887 -10.77308 -10.68602 -9.51383 -9.25530 -8.30234 -6.33860 1.36990 1.37922 1.49905 2.35972 2.59033 2.92847 3.05167 3.52899 3.86518 3.96256 3.99574 4.07730 4.16409 4.24131 4.32928 4.37195 4.49639 4.54991 4.59817 4.68164 4.70864 4.79180 4.85301 4.89637 4.94647 5.01146 5.04546 5.11944 5.22207 5.34147 5.48782 5.66277 5.85150 5.91489 6.14986 6.21416 6.33114 6.53048 6.72425 7.31017 8.85961 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033717 B = 0.004548 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.233447 B = 6155.288557 C = 6565.713388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.099 3.901 3 H 0.019 0.981 4 C -0.013 4.013 5 C -0.525 4.525 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.247 1.247 12 H -0.287 1.287 13 N -0.684 5.684 14 C 0.072 3.928 15 C 0.068 3.932 16 N -0.537 5.537 17 C 0.011 3.989 18 C 0.068 3.932 19 O -0.406 6.406 20 C 0.064 3.936 21 C 0.015 3.985 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.265 0.735 28 H 0.340 0.660 29 H 0.011 0.989 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.018 0.982 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 3.228 15.964 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.011 4.011 3 H 0.037 0.963 4 C -0.051 4.051 5 C -0.563 4.563 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.213 1.213 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.060 4.060 16 N -0.262 5.262 17 C -0.117 4.117 18 C -0.009 4.009 19 O -0.325 6.325 20 C -0.013 4.013 21 C -0.113 4.113 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.029 0.971 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.720 3.208 16.208 19.170 hybrid contribution 1.819 -0.328 -1.435 2.340 sum -7.902 2.880 14.774 17.000 Atomic orbital electron populations 1.21733 0.93484 1.02064 1.01346 1.21342 0.95610 0.94590 0.89579 0.96299 1.19723 0.94050 0.96578 0.94706 1.21344 0.92161 1.34127 1.08701 0.95092 1.25951 0.95476 0.96854 1.00629 1.70067 1.08582 1.47009 1.33409 0.85658 0.79669 0.79375 0.77912 1.19320 1.17044 1.21299 1.60608 1.33711 1.32617 1.04693 1.21854 1.00552 0.93363 0.90011 1.21946 0.99282 0.95058 0.89752 1.62197 1.47159 1.14065 1.02792 1.22886 0.93176 0.95067 1.00596 1.22719 1.02969 0.92964 0.82199 1.87950 1.52718 1.49802 1.41983 1.22822 0.92833 0.88321 0.97301 1.22890 1.01036 0.97289 0.90038 0.92139 0.92305 0.92243 0.95699 0.95767 0.92597 0.84159 0.97127 0.90044 0.89068 0.96366 0.95485 0.89736 0.91388 0.87140 0.91471 0.86373 0.87899 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.41 71.98 0.68 -3.34 16 2 C 0.10 3.87 2.59 44.91 0.12 3.99 16 3 H 0.02 0.80 7.80 -2.39 -0.02 0.78 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.53 -29.58 8.67 25.60 0.22 -29.36 16 6 H 0.03 1.92 7.73 -2.91 -0.02 1.90 16 7 C 0.01 0.46 5.47 84.65 0.46 0.92 16 8 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 9 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.68 -25.65 6.31 -491.56 -3.10 -28.75 16 14 C 0.07 2.28 5.42 86.31 0.47 2.75 16 15 C 0.07 1.90 5.22 86.31 0.45 2.35 16 16 N -0.54 -13.28 4.73 -895.22 -4.23 -17.51 16 17 C 0.01 0.28 5.44 86.31 0.47 0.75 16 18 C 0.07 1.41 7.01 72.01 0.50 1.92 16 19 O -0.41 -9.26 10.83 -148.98 -1.61 -10.88 16 20 C 0.06 1.14 7.01 72.01 0.50 1.64 16 21 C 0.02 0.32 5.64 86.31 0.49 0.80 16 22 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 25 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.34 14.62 7.21 -89.70 -0.65 13.97 16 29 H 0.01 0.37 6.43 -2.39 -0.02 0.35 16 30 H 0.08 2.43 7.44 -2.38 -0.02 2.41 16 31 H 0.09 2.41 8.04 -2.39 -0.02 2.39 16 32 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 2.18 6.38 -2.38 -0.02 2.17 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.10 1.75 8.09 -2.39 -0.02 1.73 16 40 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -64.25 312.46 -2.00 -66.24 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.29 Total: 21.74 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.47 Total: -18.06 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -7.03 Total: -105.08 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.61 Total: -10.88 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -64.25 -2.00 -66.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.759 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds