Wall clock time and date at job start Mon Mar 30 2020 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99767 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46795 * 90.00379 * 9 7 5 11 11 H 1.48496 * 109.47512 * 210.00247 * 9 7 5 12 12 H 1.48496 * 109.47341 * 330.00634 * 9 7 5 13 13 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 14 14 C 1.46897 * 111.00172 * 84.99810 * 13 2 1 15 15 C 1.52998 * 109.47146 * 180.02562 * 14 13 2 16 16 N 1.46903 * 109.47065 * 179.97438 * 15 14 13 17 17 C 1.47015 * 111.00172 * 293.63202 * 16 15 14 18 18 C 1.53092 * 109.25636 * 177.60686 * 17 16 15 19 19 O 1.43016 * 109.25839 * 56.85227 * 18 17 16 20 20 C 1.43012 * 113.73756 * 301.32975 * 19 18 17 21 21 C 1.47019 * 110.99601 * 170.00067 * 16 15 14 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 27 27 H 0.97005 * 119.99608 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99467 * 321.04346 * 13 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 14 13 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 14 13 2 31 31 H 1.08995 * 109.47099 * 300.00333 * 15 14 13 32 32 H 1.09010 * 109.47207 * 59.99644 * 15 14 13 33 33 H 1.08991 * 109.50827 * 297.54485 * 17 16 15 34 34 H 1.09004 * 109.50328 * 57.67672 * 17 16 15 35 35 H 1.09001 * 109.50857 * 296.91883 * 18 17 16 36 36 H 1.08996 * 109.54584 * 176.80950 * 18 17 16 37 37 H 1.09002 * 109.50927 * 298.72927 * 20 19 18 38 38 H 1.09007 * 109.54254 * 178.62883 * 20 19 18 39 39 H 1.08997 * 109.50894 * 302.32497 * 21 16 15 40 40 H 1.08992 * 109.50777 * 62.41650 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0614 2.4365 10 1 6.4709 0.1614 3.1892 11 1 6.6442 -2.2565 3.1236 12 1 6.6413 -0.9847 1.0590 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5951 -0.5329 -3.5745 16 7 2.6573 0.3821 -4.7221 17 6 1.3112 0.8159 -5.1236 18 6 1.4259 1.8117 -6.2807 19 8 2.1422 1.2025 -7.3582 20 6 3.4576 0.7684 -7.0024 21 6 3.3636 -0.2380 -5.8526 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6054 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2055 27 1 4.0608 -2.2431 4.0357 28 1 1.4496 -1.4978 -1.4101 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.5903 -0.9270 -3.3692 32 1 1.9184 -1.3564 -3.8031 33 1 0.7305 -0.0490 -5.4439 34 1 0.8161 1.2949 -4.2788 35 1 1.9605 2.7002 -5.9447 36 1 0.4290 2.0933 -6.6196 37 1 4.0513 1.6266 -6.6874 38 1 3.9305 0.2949 -7.8628 39 1 4.3666 -0.5283 -5.5401 40 1 2.8160 -1.1202 -6.1841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709990936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:02 Heat of formation + Delta-G solvation = -47.479875 kcal Electronic energy + Delta-G solvation = -17802.906807 eV Core-core repulsion = 15038.315188 eV Total energy + Delta-G solvation = -2764.591619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70183 -37.13116 -35.64926 -32.75191 -31.45105 -31.05286 -28.23226 -27.21926 -25.25919 -24.18506 -22.96728 -21.42058 -20.51851 -19.61926 -16.71318 -16.36005 -16.16107 -15.50518 -15.22795 -15.01077 -14.64173 -14.43795 -14.26018 -13.56140 -13.41949 -12.68330 -12.45048 -12.24785 -11.97021 -11.75465 -11.56928 -11.51816 -11.26117 -10.92642 -10.85509 -10.67316 -10.52384 -10.39740 -10.02714 -9.84140 -9.24427 -8.94678 -8.49081 -8.22545 -7.55100 -5.84837 -3.82220 3.41265 3.47208 3.52523 3.55859 3.72368 4.59631 4.68017 4.78434 4.85334 4.96305 5.02045 5.10577 5.27563 5.36513 5.41372 5.48264 5.52958 5.60190 5.65374 5.72507 5.78170 5.79709 5.90589 6.03381 6.13749 6.25744 6.47662 6.63981 6.84132 6.91065 6.95364 7.04310 7.58138 7.71434 8.03964 8.09038 8.19587 8.63625 9.23220 9.79012 11.27386 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.004687 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.457457 B = 5972.064036 C = 6727.250850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.664 5.664 14 C 0.066 3.934 15 C 0.059 3.941 16 N -0.536 5.536 17 C 0.014 3.986 18 C 0.064 3.936 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.018 3.982 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.328 0.672 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 4.940 -18.369 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.018 4.018 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.294 5.294 14 C -0.064 4.064 15 C -0.069 4.069 16 N -0.261 5.261 17 C -0.114 4.114 18 C -0.013 4.013 19 O -0.308 6.308 20 C -0.013 4.013 21 C -0.110 4.110 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.146 0.854 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.552 5.320 -18.088 19.186 hybrid contribution -0.299 -0.676 0.037 0.740 sum -3.851 4.644 -18.051 19.032 Atomic orbital electron populations 1.22553 0.99593 1.01126 1.00563 1.21780 0.89793 0.98178 0.92092 0.91739 1.19116 0.96271 0.95365 0.89714 1.21156 0.91908 1.32755 1.06740 0.92356 1.25006 0.97997 0.95931 0.96066 1.69970 1.35181 1.37113 1.12379 0.86634 0.86445 0.77177 0.77945 1.21040 1.21573 1.19954 1.60460 1.57768 1.08611 1.02581 1.21896 0.98294 0.96203 0.90006 1.22121 1.02320 0.92969 0.89489 1.62140 1.16904 1.40927 1.06178 1.22846 0.90675 0.98977 0.98920 1.22668 0.97036 0.94893 0.86713 1.87959 1.28004 1.79060 1.35743 1.22669 0.84503 0.97152 0.96988 1.22770 1.00161 0.96376 0.91707 0.92429 0.93088 0.94543 0.96476 0.96543 0.93380 0.85435 0.96578 0.90552 0.89432 0.95136 0.94175 0.89286 0.92194 0.88631 0.92184 0.88570 0.89378 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.16 37.16 0.34 -2.67 16 2 C 0.09 1.84 2.53 -67.71 -0.17 1.67 16 3 H 0.06 1.35 7.80 -51.93 -0.40 0.94 16 4 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 5 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.69 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.66 -12.34 5.96 -106.73 -0.64 -12.98 16 14 C 0.07 1.02 5.42 -3.83 -0.02 1.00 16 15 C 0.06 0.80 5.22 -3.82 -0.02 0.79 16 16 N -0.54 -6.61 4.73 -234.31 -1.11 -7.72 16 17 C 0.01 0.16 5.44 -3.71 -0.02 0.13 16 18 C 0.06 0.63 7.01 37.21 0.26 0.89 16 19 O -0.39 -4.45 10.83 -35.23 -0.38 -4.83 16 20 C 0.06 0.62 7.01 37.21 0.26 0.88 16 21 C 0.02 0.20 5.65 -3.71 -0.02 0.17 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.33 5.70 8.47 -39.29 -0.33 5.36 16 29 H 0.02 0.23 5.81 -51.93 -0.30 -0.07 16 30 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 31 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 32 H 0.03 0.41 8.12 -51.92 -0.42 -0.02 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.96 6.38 -51.93 -0.33 0.63 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -31.12 317.71 -8.75 -39.87 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.20 Total: -0.20 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.01 Total: -47.65 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.12 -8.75 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.614 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds