Wall clock time and date at job start Mon Mar 30 2020 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99767 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46795 * 90.00379 * 9 7 5 11 11 H 1.48496 * 109.47512 * 210.00247 * 9 7 5 12 12 H 1.48496 * 109.47341 * 330.00634 * 9 7 5 13 13 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 14 14 C 1.46897 * 111.00172 * 84.99810 * 13 2 1 15 15 C 1.52998 * 109.47146 * 180.02562 * 14 13 2 16 16 N 1.46903 * 109.47065 * 179.97438 * 15 14 13 17 17 C 1.47015 * 111.00172 * 293.63202 * 16 15 14 18 18 C 1.53092 * 109.25636 * 177.60686 * 17 16 15 19 19 O 1.43016 * 109.25839 * 56.85227 * 18 17 16 20 20 C 1.43012 * 113.73756 * 301.32975 * 19 18 17 21 21 C 1.47019 * 110.99601 * 170.00067 * 16 15 14 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 27 27 H 0.97005 * 119.99608 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99467 * 321.04346 * 13 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 14 13 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 14 13 2 31 31 H 1.08995 * 109.47099 * 300.00333 * 15 14 13 32 32 H 1.09010 * 109.47207 * 59.99644 * 15 14 13 33 33 H 1.08991 * 109.50827 * 297.54485 * 17 16 15 34 34 H 1.09004 * 109.50328 * 57.67672 * 17 16 15 35 35 H 1.09001 * 109.50857 * 296.91883 * 18 17 16 36 36 H 1.08996 * 109.54584 * 176.80950 * 18 17 16 37 37 H 1.09002 * 109.50927 * 298.72927 * 20 19 18 38 38 H 1.09007 * 109.54254 * 178.62883 * 20 19 18 39 39 H 1.08997 * 109.50894 * 302.32497 * 21 16 15 40 40 H 1.08992 * 109.50777 * 62.41650 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0614 2.4365 10 1 6.4709 0.1614 3.1892 11 1 6.6442 -2.2565 3.1236 12 1 6.6413 -0.9847 1.0590 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5951 -0.5329 -3.5745 16 7 2.6573 0.3821 -4.7221 17 6 1.3112 0.8159 -5.1236 18 6 1.4259 1.8117 -6.2807 19 8 2.1422 1.2025 -7.3582 20 6 3.4576 0.7684 -7.0024 21 6 3.3636 -0.2380 -5.8526 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6054 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2055 27 1 4.0608 -2.2431 4.0357 28 1 1.4496 -1.4978 -1.4101 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.5903 -0.9270 -3.3692 32 1 1.9184 -1.3564 -3.8031 33 1 0.7305 -0.0490 -5.4439 34 1 0.8161 1.2949 -4.2788 35 1 1.9605 2.7002 -5.9447 36 1 0.4290 2.0933 -6.6196 37 1 4.0513 1.6266 -6.6874 38 1 3.9305 0.2949 -7.8628 39 1 4.3666 -0.5283 -5.5401 40 1 2.8160 -1.1202 -6.1841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709990936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:01 Heat of formation + Delta-G solvation = -70.499414 kcal Electronic energy + Delta-G solvation = -17803.905009 eV Core-core repulsion = 15038.315188 eV Total energy + Delta-G solvation = -2765.589821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56765 -38.51608 -36.78914 -34.78554 -32.70816 -32.10305 -29.58175 -28.93738 -26.37637 -25.01899 -24.94766 -22.58270 -21.56685 -21.15129 -18.37704 -17.62749 -17.18650 -16.64478 -16.47505 -16.12707 -16.00366 -15.76576 -15.51849 -14.80252 -14.71853 -14.22659 -13.90469 -13.46143 -13.32332 -13.19442 -13.03641 -12.83476 -12.55018 -12.38699 -12.35195 -12.13846 -11.98835 -11.83827 -11.50939 -11.14124 -11.08455 -10.66223 -10.47720 -9.43838 -9.00482 -8.08845 -6.13663 1.42246 1.43297 1.54863 2.48525 2.61972 2.94652 3.24360 3.56470 3.89684 3.99338 4.00521 4.10526 4.19352 4.25551 4.33393 4.37429 4.50044 4.51137 4.56813 4.63465 4.73102 4.81395 4.86190 4.90731 4.97233 5.02873 5.07574 5.22912 5.28385 5.51158 5.67490 5.90975 5.92827 5.95550 6.16441 6.33260 6.48794 6.72219 7.00453 7.52066 9.03372 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.004687 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.457457 B = 5972.064036 C = 6727.250850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.682 5.682 14 C 0.076 3.924 15 C 0.069 3.931 16 N -0.545 5.545 17 C 0.014 3.986 18 C 0.064 3.936 19 O -0.404 6.404 20 C 0.064 3.936 21 C 0.017 3.983 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.064 0.936 25 H -0.008 1.008 26 H -0.009 1.009 27 H 0.259 0.741 28 H 0.336 0.664 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 5.588 -19.994 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.314 5.314 14 C -0.054 4.054 15 C -0.059 4.059 16 N -0.271 5.271 17 C -0.114 4.114 18 C -0.013 4.013 19 O -0.323 6.323 20 C -0.012 4.012 21 C -0.111 4.111 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.379 5.979 -19.735 20.896 hybrid contribution -0.369 -0.875 0.525 1.086 sum -3.748 5.103 -19.210 20.226 Atomic orbital electron populations 1.22400 0.96631 1.01770 1.01933 1.21434 0.92106 0.96772 0.90568 0.92445 1.19006 0.95129 0.94220 0.91707 1.21489 0.93442 1.32311 1.06507 0.92678 1.25867 1.02969 0.95650 0.95768 1.70099 1.37113 1.38109 1.13065 0.85562 0.80531 0.77409 0.78192 1.20110 1.21166 1.19260 1.60270 1.58348 1.09557 1.03181 1.21792 0.98917 0.95245 0.89426 1.21913 1.01438 0.93085 0.89487 1.62131 1.17944 1.40669 1.06389 1.22890 0.89863 0.99161 0.99454 1.22773 0.98043 0.94369 0.86096 1.87943 1.28690 1.79199 1.36478 1.22778 0.84090 0.97003 0.97371 1.22832 1.00136 0.96603 0.91498 0.92458 0.92827 0.91724 0.98962 0.99064 0.93279 0.84629 0.94764 0.92245 0.90870 0.94629 0.94388 0.89034 0.92134 0.86637 0.92122 0.86506 0.88965 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.41 9.16 71.98 0.66 -4.75 16 2 C 0.10 4.06 2.53 44.91 0.11 4.17 16 3 H 0.06 2.38 7.80 -2.39 -0.02 2.36 16 4 C 0.04 1.94 4.65 29.85 0.14 2.08 16 5 C -0.50 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 9 Si 0.96 45.97 29.54 68.60 2.03 47.99 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.68 -24.92 5.96 -491.58 -2.93 -27.85 16 14 C 0.08 2.25 5.42 86.30 0.47 2.71 16 15 C 0.07 1.80 5.22 86.30 0.45 2.25 16 16 N -0.55 -12.61 4.73 -895.23 -4.23 -16.84 16 17 C 0.01 0.29 5.44 86.31 0.47 0.76 16 18 C 0.06 1.13 7.01 72.01 0.50 1.63 16 19 O -0.40 -8.40 10.83 -148.98 -1.61 -10.01 16 20 C 0.06 1.12 7.01 72.01 0.50 1.63 16 21 C 0.02 0.34 5.65 86.31 0.49 0.83 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 24 H 0.06 1.72 7.45 -2.38 -0.02 1.70 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 27 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.34 11.35 8.47 -89.69 -0.76 10.59 16 29 H 0.03 0.90 5.81 -2.38 -0.01 0.89 16 30 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 31 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 32 H 0.04 0.89 8.12 -2.38 -0.02 0.88 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.75 6.38 -2.39 -0.02 1.74 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.09 1.72 8.09 -2.39 -0.02 1.71 16 40 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -66.39 317.71 -1.75 -68.14 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.23 Total: 13.97 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.48 Total: -17.19 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -6.88 Total: -102.91 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.61 Total: -10.01 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -66.39 -1.75 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709990936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.354 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds