Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.53002 * 109.47003 * 240.00059 * 2 1 3 5 5 C 1.50703 * 109.46935 * 65.69523 * 4 2 1 6 6 H 1.07999 * 120.00176 * 5.08013 * 5 4 2 7 7 C 1.37881 * 119.99614 * 184.80180 * 5 4 2 8 8 N 1.31512 * 120.00323 * 0.27957 * 7 5 4 9 9 Si 1.86804 * 119.99427 * 180.27846 * 7 5 4 10 10 H 1.48504 * 109.46865 * 90.00391 * 9 7 5 11 11 H 1.48507 * 109.46692 * 209.99773 * 9 7 5 12 12 H 1.48497 * 109.47405 * 329.99961 * 9 7 5 13 13 N 1.46896 * 109.47017 * 120.00503 * 2 1 3 14 14 C 1.46958 * 110.99987 * 190.55159 * 13 2 1 15 15 C 1.53053 * 109.36264 * 176.80980 * 14 13 2 16 16 N 1.46950 * 109.36600 * 58.40255 * 15 14 13 17 17 C 1.46949 * 110.88005 * 300.67931 * 16 15 14 18 18 H 1.09000 * 109.49097 * 299.34709 * 17 16 15 19 19 C 1.53005 * 109.48998 * 179.31240 * 17 16 15 20 20 C 1.52992 * 109.47319 * 64.99372 * 19 17 16 21 21 O 1.42901 * 109.47380 * 180.02562 * 20 19 17 22 22 C 1.46958 * 111.00429 * 66.75214 * 13 2 1 23 23 H 1.09004 * 109.47230 * 59.99380 * 1 2 3 24 24 H 1.08994 * 109.47778 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47096 * 299.99979 * 1 2 3 26 26 H 1.09004 * 109.46978 * 305.69934 * 4 2 1 27 27 H 1.08994 * 109.47016 * 185.69670 * 4 2 1 28 28 H 0.97001 * 120.00083 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.48921 * 296.77643 * 14 13 2 30 30 H 1.09002 * 109.48778 * 56.84201 * 14 13 2 31 31 H 1.09005 * 109.48725 * 178.37137 * 15 14 13 32 32 H 1.09001 * 109.49014 * 298.40935 * 15 14 13 33 33 H 1.00903 * 110.99790 * 64.54748 * 16 15 14 34 34 H 1.09000 * 109.47506 * 185.00009 * 19 17 16 35 35 H 1.09003 * 109.46877 * 304.99878 * 19 17 16 36 36 H 1.09001 * 109.47777 * 300.00409 * 20 19 17 37 37 H 1.09002 * 109.47199 * 60.00667 * 20 19 17 38 38 H 0.96705 * 114.00270 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.48889 * 303.15836 * 22 13 2 40 40 H 1.08999 * 109.48721 * 63.22222 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6560 0.0659 -2.4757 6 1 1.1763 1.0280 -2.3716 7 6 1.9223 -0.4395 -3.7305 8 7 2.5064 -1.6109 -3.8573 9 14 1.4534 0.5398 -5.2506 10 1 2.5828 1.4227 -5.6385 11 1 1.1486 -0.3926 -6.3655 12 1 0.2563 1.3678 -4.9563 13 7 2.0196 -0.6926 1.1993 14 6 3.4668 -0.4985 1.3657 15 6 3.9224 -1.1667 2.6651 16 7 3.5874 -2.5968 2.6210 17 6 2.1403 -2.7909 2.4547 18 1 1.6140 -2.3433 3.2978 19 6 1.8295 -4.2879 2.3957 20 6 2.1724 -4.9334 3.7398 21 8 1.8827 -6.3316 3.6845 22 6 1.6846 -2.1228 1.1554 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5956 -1.7152 -1.3017 27 1 3.1251 -0.8104 -1.1997 28 1 2.6941 -1.9663 -4.7401 29 1 3.9930 -0.9462 0.5226 30 1 3.6882 0.5680 1.4081 31 1 5.0003 -1.0489 2.7760 32 1 3.4167 -0.7003 3.5106 33 1 4.1015 -3.0663 1.8907 34 1 0.7699 -4.4310 2.1838 35 1 2.4234 -4.7515 1.6080 36 1 3.2320 -4.7904 3.9518 37 1 1.5785 -4.4698 4.5275 38 1 2.0759 -6.8061 4.5047 39 1 0.6067 -2.2406 1.0444 40 1 2.1906 -2.5889 0.3099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710441983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = -59.376491 kcal Electronic energy + Delta-G solvation = -18406.276744 eV Core-core repulsion = 15641.169249 eV Total energy + Delta-G solvation = -2765.107495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39078 -37.01831 -35.51304 -32.91031 -32.36613 -30.12333 -28.53921 -27.02802 -25.06726 -23.40611 -23.00847 -21.28110 -20.53134 -18.72949 -17.38086 -16.51870 -15.64652 -15.29871 -14.83113 -14.50449 -14.37501 -14.19158 -13.80832 -13.71960 -13.05167 -12.69509 -12.22265 -11.97600 -11.75418 -11.48795 -11.26400 -11.19605 -10.97903 -10.93764 -10.73759 -10.72050 -10.56440 -10.32804 -9.91625 -9.87723 -9.63173 -9.14547 -8.40690 -8.24635 -7.51691 -6.05388 -4.07792 3.27917 3.34649 3.37622 4.08123 4.35715 4.41119 4.59458 5.08915 5.21680 5.30077 5.37611 5.43610 5.48364 5.57034 5.59767 5.66281 5.85077 5.92056 6.05595 6.08217 6.16539 6.19869 6.24604 6.34827 6.38052 6.47532 6.77385 6.89453 6.99394 7.12617 7.44924 7.50305 7.52346 7.61250 7.66173 7.81539 7.95025 8.38021 8.98296 9.56264 11.05746 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.005492 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.544262 B = 5097.462366 C = 5441.742431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.079 3.921 3 H 0.067 0.933 4 C 0.000 4.000 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.533 5.533 14 C 0.014 3.986 15 C 0.062 3.938 16 N -0.684 5.684 17 C 0.093 3.907 18 H 0.085 0.915 19 C -0.112 4.112 20 C 0.083 3.917 21 O -0.581 6.581 22 C 0.021 3.979 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.338 0.662 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.375 0.625 39 H 0.077 0.923 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -3.169 14.517 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.038 4.038 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.257 5.257 14 C -0.116 4.116 15 C -0.068 4.068 16 N -0.313 5.313 17 C -0.017 4.017 18 H 0.103 0.897 19 C -0.150 4.150 20 C 0.006 3.994 21 O -0.386 6.386 22 C -0.109 4.109 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.269 -2.981 14.889 15.186 hybrid contribution 0.285 0.331 -2.185 2.228 sum 0.554 -2.650 12.703 12.989 Atomic orbital electron populations 1.21678 0.95249 1.00964 1.00482 1.21857 0.95136 0.97437 0.88385 0.91465 1.19658 0.95852 0.96439 0.91889 1.21148 1.39095 1.04423 0.90758 0.92553 1.25016 0.95199 0.94965 0.99160 1.69958 1.42467 1.17695 1.23348 0.86613 0.78885 0.79887 0.82760 1.20696 1.21223 1.19801 1.62496 1.12685 1.10305 1.40213 1.22780 0.89683 1.01372 0.97742 1.22057 1.00043 0.87547 0.97120 1.60920 1.06328 1.11904 1.52196 1.21555 0.88755 0.93753 0.97656 0.89673 1.21499 1.02458 0.93953 0.97113 1.22121 0.99711 0.80263 0.97338 1.86476 1.89665 1.21572 1.40871 1.22778 1.01894 0.89367 0.96853 0.91629 0.93649 0.94222 0.95939 0.97282 0.93007 0.94161 0.90883 0.90804 0.90588 0.84457 0.90819 0.91210 0.92456 0.94154 0.77864 0.90431 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.96 37.16 0.33 -2.10 16 2 C 0.08 1.64 2.33 -67.72 -0.16 1.48 16 3 H 0.07 1.43 8.01 -51.93 -0.42 1.01 16 4 C 0.00 -0.01 3.56 -27.88 -0.10 -0.11 16 5 C -0.52 -14.30 8.32 -34.44 -0.29 -14.59 16 6 H 0.06 1.52 7.30 -52.49 -0.38 1.14 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.53 -9.50 4.66 -226.49 -1.05 -10.55 16 14 C 0.01 0.23 5.34 -3.76 -0.02 0.21 16 15 C 0.06 0.82 6.72 -3.77 -0.03 0.80 16 16 N -0.68 -9.05 6.02 -106.59 -0.64 -9.69 16 17 C 0.09 1.29 2.59 -67.66 -0.18 1.11 16 18 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.11 -1.46 5.19 -26.73 -0.14 -1.60 16 20 C 0.08 0.94 6.93 37.15 0.26 1.20 16 21 O -0.58 -6.76 13.66 -35.23 -0.48 -7.25 16 22 C 0.02 0.36 4.02 -3.77 -0.02 0.34 16 23 H 0.06 1.33 7.11 -51.93 -0.37 0.96 16 24 H 0.04 0.86 6.51 -51.93 -0.34 0.53 16 25 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.02 0.61 6.75 -51.93 -0.35 0.26 16 27 H 0.01 0.25 6.56 -51.93 -0.34 -0.09 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 0.75 6.67 -51.93 -0.35 0.41 16 30 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.34 4.59 8.80 -39.29 -0.35 4.25 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 2.52 9.12 45.56 0.42 2.94 16 39 H 0.08 1.34 6.36 -51.93 -0.33 1.01 16 40 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -30.49 308.75 -8.29 -38.78 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.06 Total: 5.25 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.42 Total: -11.70 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.96 Total: -46.28 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.25 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.49 -8.29 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.598 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds