Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.53002 * 109.47003 * 240.00059 * 2 1 3 5 5 C 1.50703 * 109.46935 * 65.69523 * 4 2 1 6 6 H 1.07999 * 120.00176 * 5.08013 * 5 4 2 7 7 C 1.37881 * 119.99614 * 184.80180 * 5 4 2 8 8 N 1.31512 * 120.00323 * 0.27957 * 7 5 4 9 9 Si 1.86804 * 119.99427 * 180.27846 * 7 5 4 10 10 H 1.48504 * 109.46865 * 90.00391 * 9 7 5 11 11 H 1.48507 * 109.46692 * 209.99773 * 9 7 5 12 12 H 1.48497 * 109.47405 * 329.99961 * 9 7 5 13 13 N 1.46896 * 109.47017 * 120.00503 * 2 1 3 14 14 C 1.46958 * 110.99987 * 190.55159 * 13 2 1 15 15 C 1.53053 * 109.36264 * 176.80980 * 14 13 2 16 16 N 1.46950 * 109.36600 * 58.40255 * 15 14 13 17 17 C 1.46949 * 110.88005 * 300.67931 * 16 15 14 18 18 H 1.09000 * 109.49097 * 299.34709 * 17 16 15 19 19 C 1.53005 * 109.48998 * 179.31240 * 17 16 15 20 20 C 1.52992 * 109.47319 * 64.99372 * 19 17 16 21 21 O 1.42901 * 109.47380 * 180.02562 * 20 19 17 22 22 C 1.46958 * 111.00429 * 66.75214 * 13 2 1 23 23 H 1.09004 * 109.47230 * 59.99380 * 1 2 3 24 24 H 1.08994 * 109.47778 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47096 * 299.99979 * 1 2 3 26 26 H 1.09004 * 109.46978 * 305.69934 * 4 2 1 27 27 H 1.08994 * 109.47016 * 185.69670 * 4 2 1 28 28 H 0.97001 * 120.00083 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.48921 * 296.77643 * 14 13 2 30 30 H 1.09002 * 109.48778 * 56.84201 * 14 13 2 31 31 H 1.09005 * 109.48725 * 178.37137 * 15 14 13 32 32 H 1.09001 * 109.49014 * 298.40935 * 15 14 13 33 33 H 1.00903 * 110.99790 * 64.54748 * 16 15 14 34 34 H 1.09000 * 109.47506 * 185.00009 * 19 17 16 35 35 H 1.09003 * 109.46877 * 304.99878 * 19 17 16 36 36 H 1.09001 * 109.47777 * 300.00409 * 20 19 17 37 37 H 1.09002 * 109.47199 * 60.00667 * 20 19 17 38 38 H 0.96705 * 114.00270 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.48889 * 303.15836 * 22 13 2 40 40 H 1.08999 * 109.48721 * 63.22222 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6560 0.0659 -2.4757 6 1 1.1763 1.0280 -2.3716 7 6 1.9223 -0.4395 -3.7305 8 7 2.5064 -1.6109 -3.8573 9 14 1.4534 0.5398 -5.2506 10 1 2.5828 1.4227 -5.6385 11 1 1.1486 -0.3926 -6.3655 12 1 0.2563 1.3678 -4.9563 13 7 2.0196 -0.6926 1.1993 14 6 3.4668 -0.4985 1.3657 15 6 3.9224 -1.1667 2.6651 16 7 3.5874 -2.5968 2.6210 17 6 2.1403 -2.7909 2.4547 18 1 1.6140 -2.3433 3.2978 19 6 1.8295 -4.2879 2.3957 20 6 2.1724 -4.9334 3.7398 21 8 1.8827 -6.3316 3.6845 22 6 1.6846 -2.1228 1.1554 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.5956 -1.7152 -1.3017 27 1 3.1251 -0.8104 -1.1997 28 1 2.6941 -1.9663 -4.7401 29 1 3.9930 -0.9462 0.5226 30 1 3.6882 0.5680 1.4081 31 1 5.0003 -1.0489 2.7760 32 1 3.4167 -0.7003 3.5106 33 1 4.1015 -3.0663 1.8907 34 1 0.7699 -4.4310 2.1838 35 1 2.4234 -4.7515 1.6080 36 1 3.2320 -4.7904 3.9518 37 1 1.5785 -4.4698 4.5275 38 1 2.0759 -6.8061 4.5047 39 1 0.6067 -2.2406 1.0444 40 1 2.1906 -2.5889 0.3099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710441983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = -84.236450 kcal Electronic energy + Delta-G solvation = -18407.354752 eV Core-core repulsion = 15641.169249 eV Total energy + Delta-G solvation = -2766.185503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74894 -38.05967 -36.89774 -34.80683 -33.69500 -31.74055 -29.71516 -28.95839 -26.44597 -25.14149 -24.41895 -22.51905 -21.74219 -20.34282 -18.70132 -18.21162 -16.84317 -16.67173 -16.55378 -15.96933 -15.81967 -15.35851 -15.19990 -14.86034 -14.69224 -14.19846 -14.09866 -13.55918 -13.07353 -12.89682 -12.79589 -12.70226 -12.59760 -12.33970 -12.33385 -12.08847 -11.96089 -11.81513 -11.68271 -11.36329 -11.22678 -10.78368 -10.59762 -9.49317 -9.09016 -8.23997 -6.35166 1.36115 1.36876 1.48160 2.36280 2.87063 3.08889 3.24775 3.44976 3.98819 4.06948 4.11965 4.23017 4.28914 4.35981 4.42867 4.47914 4.52538 4.64451 4.69605 4.74595 4.78434 4.86499 4.93402 5.06225 5.10126 5.17652 5.20474 5.25889 5.35543 5.44322 5.53512 5.68888 5.97710 5.98250 6.22939 6.30516 6.35841 6.81240 6.98787 7.33940 8.87091 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.005492 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.544262 B = 5097.462366 C = 5441.742431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.086 3.914 3 H 0.065 0.935 4 C 0.014 3.986 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.522 5.522 14 C 0.012 3.988 15 C 0.072 3.928 16 N -0.675 5.675 17 C 0.107 3.893 18 H 0.098 0.902 19 C -0.110 4.110 20 C 0.091 3.909 21 O -0.601 6.601 22 C 0.025 3.975 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.067 0.933 26 H -0.008 1.008 27 H -0.022 1.022 28 H 0.262 0.738 29 H 0.008 0.992 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.335 0.665 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.397 0.603 39 H 0.073 0.927 40 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -2.327 16.016 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.022 4.022 3 H 0.083 0.917 4 C -0.024 4.024 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.185 1.185 13 N -0.246 5.246 14 C -0.118 4.118 15 C -0.058 4.058 16 N -0.304 5.304 17 C -0.003 4.003 18 H 0.116 0.884 19 C -0.149 4.149 20 C 0.013 3.987 21 O -0.409 6.409 22 C -0.105 4.105 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.011 0.989 27 H -0.003 1.003 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -0.147 -2.142 16.424 16.564 hybrid contribution 0.446 0.028 -2.636 2.674 sum 0.299 -2.114 13.788 13.952 Atomic orbital electron populations 1.21584 0.93846 1.00955 1.01195 1.21686 0.96263 0.96842 0.87430 0.91684 1.19476 0.93679 0.95271 0.93975 1.21573 1.38823 1.04813 0.91833 0.91936 1.25954 0.95045 0.95954 1.02718 1.70104 1.43742 1.19519 1.24172 0.85493 0.79056 0.78417 0.78403 1.19889 1.20950 1.18453 1.62567 1.13699 1.10484 1.37809 1.22911 0.88320 1.01999 0.98525 1.22091 1.01531 0.86903 0.95285 1.60964 1.05762 1.11957 1.51672 1.21445 0.89117 0.93982 0.95777 0.88411 1.21454 1.01897 0.93456 0.98069 1.22005 1.00168 0.80319 0.96174 1.86419 1.89838 1.21795 1.42888 1.22802 1.01291 0.88854 0.97587 0.92904 0.94027 0.91398 0.98949 1.00343 0.92934 0.97346 0.90236 0.88556 0.89264 0.84762 0.91218 0.92979 0.92059 0.92531 0.75356 0.90841 0.97340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.96 71.98 0.64 -3.85 16 2 C 0.09 3.59 2.33 44.92 0.10 3.70 16 3 H 0.06 2.75 8.01 -2.39 -0.02 2.73 16 4 C 0.01 0.75 3.56 29.85 0.11 0.86 16 5 C -0.53 -30.11 8.32 25.60 0.21 -29.90 16 6 H 0.06 3.39 7.30 -2.91 -0.02 3.37 16 7 C 0.00 0.05 5.46 84.66 0.46 0.52 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 N -0.52 -18.53 4.66 -870.48 -4.05 -22.58 16 14 C 0.01 0.40 5.34 86.31 0.46 0.86 16 15 C 0.07 1.75 6.72 86.31 0.58 2.33 16 16 N -0.68 -16.91 6.02 -491.15 -2.96 -19.87 16 17 C 0.11 2.86 2.59 44.92 0.12 2.97 16 18 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.11 -2.82 5.19 30.59 0.16 -2.66 16 20 C 0.09 1.88 6.93 71.98 0.50 2.38 16 21 O -0.60 -12.95 13.66 -148.98 -2.04 -14.98 16 22 C 0.02 0.85 4.02 86.31 0.35 1.20 16 23 H 0.05 2.12 7.11 -2.38 -0.02 2.10 16 24 H 0.04 1.58 6.51 -2.39 -0.02 1.57 16 25 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 26 H -0.01 -0.46 6.75 -2.38 -0.02 -0.47 16 27 H -0.02 -1.26 6.56 -2.39 -0.02 -1.28 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.01 0.32 6.67 -2.39 -0.02 0.31 16 30 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 31 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.34 9.00 8.80 -89.69 -0.79 8.21 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.40 4.46 9.12 -74.05 -0.68 3.79 16 39 H 0.07 2.58 6.36 -2.38 -0.02 2.57 16 40 H 0.01 0.35 6.54 -2.39 -0.02 0.34 16 Total: -1.00 -66.67 308.75 -3.48 -70.15 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.44 Total: 19.65 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.69 Total: -21.59 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -6.72 Total: -99.76 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -2.04 Total: -14.98 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.67 -3.48 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.087 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds