Wall clock time and date at job start Mon Mar 30 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46924 * 2 1 4 4 C 1.53007 * 109.46853 * 240.00710 * 2 1 3 5 5 C 1.50695 * 109.47292 * 63.09476 * 4 2 1 6 6 H 1.08002 * 119.99918 * 4.90090 * 5 4 2 7 7 C 1.37881 * 120.00162 * 184.89715 * 5 4 2 8 8 N 1.31511 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47392 * 90.00349 * 9 7 5 11 11 H 1.48507 * 109.47262 * 210.00366 * 9 7 5 12 12 H 1.48500 * 109.47259 * 330.00135 * 9 7 5 13 13 N 1.46900 * 109.47554 * 120.00875 * 2 1 3 14 14 C 1.46960 * 111.00284 * 174.00542 * 13 2 1 15 15 C 1.53045 * 109.36616 * 183.18675 * 14 13 2 16 16 N 1.46958 * 109.36070 * 301.59704 * 15 14 13 17 17 C 1.46960 * 110.88395 * 59.32087 * 16 15 14 18 18 H 1.09000 * 109.50130 * 60.65589 * 17 16 15 19 19 C 1.53004 * 109.49043 * 180.70883 * 17 16 15 20 20 C 1.52997 * 109.47009 * 294.89173 * 19 17 16 21 21 O 1.42905 * 109.47064 * 179.97438 * 20 19 17 22 22 C 1.46958 * 110.99437 * 297.80251 * 13 2 1 23 23 H 1.08994 * 109.47174 * 59.99669 * 1 2 3 24 24 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46751 * 299.98886 * 1 2 3 26 26 H 1.09007 * 109.46974 * 183.09530 * 4 2 1 27 27 H 1.09002 * 109.47237 * 303.08999 * 4 2 1 28 28 H 0.97002 * 120.00070 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.48636 * 303.15528 * 14 13 2 30 30 H 1.08999 * 109.48635 * 63.21411 * 14 13 2 31 31 H 1.08996 * 109.48872 * 181.63140 * 15 14 13 32 32 H 1.08993 * 109.50742 * 61.56901 * 15 14 13 33 33 H 1.00904 * 110.99758 * 183.18840 * 16 15 14 34 34 H 1.08997 * 109.46916 * 54.89100 * 19 17 16 35 35 H 1.08997 * 109.46837 * 174.88970 * 19 17 16 36 36 H 1.08997 * 109.47222 * 299.99740 * 20 19 17 37 37 H 1.09007 * 109.47459 * 60.00236 * 20 19 17 38 38 H 0.96696 * 114.00103 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.48879 * 296.77768 * 22 13 2 40 40 H 1.08996 * 109.49489 * 56.84621 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6012 0.0323 -2.4785 6 1 1.0858 0.9761 -2.3781 7 6 1.8578 -0.4832 -3.7314 8 7 2.4851 -1.6326 -3.8536 9 14 1.3146 0.4511 -5.2549 10 1 2.3984 1.3713 -5.6840 11 1 1.0209 -0.5111 -6.3473 12 1 0.0927 1.2360 -4.9449 13 7 2.0198 -0.6927 1.1993 14 6 3.4818 -0.8376 1.1637 15 6 3.9430 -1.6317 2.3880 16 7 3.5152 -0.9357 3.6096 17 6 2.0532 -0.7907 3.6453 18 1 1.5894 -1.7771 3.6349 19 6 1.6448 -0.0479 4.9190 20 6 1.9944 -0.9001 6.1407 21 8 1.6134 -0.2061 7.3304 22 6 1.5920 0.0033 2.4209 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.1286 -0.7695 -1.2221 27 1 1.6321 -1.7316 -1.2777 28 1 2.6653 -1.9955 -4.7349 29 1 3.7727 -1.3667 0.2563 30 1 3.9453 0.1489 1.1743 31 1 5.0297 -1.7155 2.3789 32 1 3.5011 -2.6277 2.3634 33 1 3.8516 -1.4114 4.4334 34 1 2.1784 0.9009 4.9732 35 1 0.5712 0.1394 4.9019 36 1 1.4607 -1.8490 6.0865 37 1 3.0681 -1.0875 6.1578 38 1 1.8056 -0.6888 8.1459 39 1 2.0341 0.9994 2.4457 40 1 0.5053 0.0872 2.4301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710441986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:58 Heat of formation + Delta-G solvation = -54.183869 kcal Electronic energy + Delta-G solvation = -18148.173357 eV Core-core repulsion = 15383.291031 eV Total energy + Delta-G solvation = -2764.882326 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.22950 -37.21561 -35.56499 -32.90970 -32.46418 -30.45511 -28.76728 -26.84326 -25.40128 -23.82701 -22.33426 -21.47626 -19.64782 -18.95382 -17.70189 -16.72936 -16.01008 -15.74194 -14.79840 -14.47494 -14.34551 -14.30118 -13.77776 -13.70285 -13.49193 -12.68459 -12.30573 -11.89619 -11.74192 -11.64027 -11.34812 -11.20352 -11.02021 -10.87743 -10.81609 -10.72747 -10.32365 -10.22944 -10.06963 -9.81967 -9.17879 -9.05006 -8.41086 -8.32319 -7.66801 -5.99183 -4.00460 3.32364 3.38802 3.41846 3.92420 4.20726 4.42206 4.58892 4.84011 4.89210 5.14431 5.31751 5.35241 5.37215 5.43221 5.56846 5.68369 5.77975 5.81438 5.92687 6.01209 6.03615 6.19692 6.26476 6.36440 6.41751 6.46049 6.73121 6.93337 7.07967 7.14069 7.34603 7.38864 7.57516 7.64174 7.82330 7.87882 8.08339 8.45045 9.05538 9.62556 11.12256 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051132 B = 0.004561 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.466071 B = 6137.058985 C = 6518.181527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.026 0.974 4 C 0.030 3.970 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.536 5.536 14 C 0.053 3.947 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.094 3.906 18 H 0.046 0.954 19 C -0.114 4.114 20 C 0.076 3.924 21 O -0.575 6.575 22 C 0.060 3.940 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.015 0.985 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.333 0.667 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.377 0.623 39 H 0.035 0.965 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -0.307 17.697 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.261 5.261 14 C -0.075 4.075 15 C -0.069 4.069 16 N -0.321 5.321 17 C -0.016 4.016 18 H 0.064 0.936 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.380 6.380 22 C -0.068 4.068 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.224 0.776 39 H 0.053 0.947 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.115 0.173 16.841 16.843 hybrid contribution 0.078 -0.131 -0.340 0.372 sum 0.193 0.041 16.502 16.503 Atomic orbital electron populations 1.21740 0.95307 1.01537 1.00043 1.21823 0.95048 0.95245 0.90019 0.95586 1.19213 0.95956 0.96267 0.89267 1.21190 1.37281 1.06162 0.90853 0.92685 1.24984 0.95333 0.94970 0.99034 1.69965 1.41539 1.18460 1.23378 0.86620 0.79007 0.79638 0.82888 1.20751 1.21257 1.19893 1.62246 1.10767 1.51082 1.02030 1.22213 0.88240 0.99216 0.97808 1.22031 0.99485 0.95670 0.89683 1.60625 1.11171 1.55525 1.04732 1.21456 0.87978 0.98156 0.94025 0.93558 1.21547 1.02249 0.99876 0.91518 1.22217 0.98206 0.94585 0.85198 1.86489 1.86555 1.48775 1.16164 1.22139 1.00143 0.95309 0.89256 0.91482 0.92747 0.95042 0.96645 0.95405 0.93047 0.88805 0.94753 0.90679 0.94420 0.84855 0.90354 0.90704 0.93925 0.93523 0.77633 0.94712 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.82 37.16 0.33 -2.20 16 2 C 0.09 1.82 2.11 -67.71 -0.14 1.68 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.03 0.78 4.15 -27.88 -0.12 0.66 16 5 C -0.52 -14.40 8.29 -34.44 -0.29 -14.69 16 6 H 0.05 1.50 7.12 -52.49 -0.37 1.13 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.54 -9.98 4.58 -226.49 -1.04 -11.02 16 14 C 0.05 0.95 5.18 -3.77 -0.02 0.93 16 15 C 0.06 0.86 6.72 -3.77 -0.03 0.83 16 16 N -0.69 -8.83 6.54 -106.59 -0.70 -9.53 16 17 C 0.09 1.23 2.65 -67.65 -0.18 1.05 16 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.11 -1.29 5.26 -26.73 -0.14 -1.43 16 20 C 0.08 0.71 6.82 37.16 0.25 0.97 16 21 O -0.57 -5.63 13.66 -35.23 -0.48 -6.11 16 22 C 0.06 0.95 4.64 -3.77 -0.02 0.93 16 23 H 0.07 1.38 6.92 -51.93 -0.36 1.02 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.52 6.38 -51.93 -0.33 0.19 16 26 H 0.02 0.42 6.08 -51.93 -0.32 0.10 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.85 5.96 -51.93 -0.31 1.54 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.33 3.49 7.10 -39.29 -0.28 3.21 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.39 6.70 -51.93 -0.35 0.04 16 38 H 0.38 1.86 9.12 45.56 0.42 2.28 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.18 6.20 -51.93 -0.32 0.86 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -31.07 308.48 -8.30 -39.38 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.01 Total: 1.70 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.44 Total: -9.71 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -1.00 Total: -46.50 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.48 Total: -6.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.07 -8.30 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.807 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds