Wall clock time and date at job start Mon Mar 30 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46924 * 2 1 4 4 C 1.53007 * 109.46853 * 240.00710 * 2 1 3 5 5 C 1.50695 * 109.47292 * 63.09476 * 4 2 1 6 6 H 1.08002 * 119.99918 * 4.90090 * 5 4 2 7 7 C 1.37881 * 120.00162 * 184.89715 * 5 4 2 8 8 N 1.31511 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99966 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47392 * 90.00349 * 9 7 5 11 11 H 1.48507 * 109.47262 * 210.00366 * 9 7 5 12 12 H 1.48500 * 109.47259 * 330.00135 * 9 7 5 13 13 N 1.46900 * 109.47554 * 120.00875 * 2 1 3 14 14 C 1.46960 * 111.00284 * 174.00542 * 13 2 1 15 15 C 1.53045 * 109.36616 * 183.18675 * 14 13 2 16 16 N 1.46958 * 109.36070 * 301.59704 * 15 14 13 17 17 C 1.46960 * 110.88395 * 59.32087 * 16 15 14 18 18 H 1.09000 * 109.50130 * 60.65589 * 17 16 15 19 19 C 1.53004 * 109.49043 * 180.70883 * 17 16 15 20 20 C 1.52997 * 109.47009 * 294.89173 * 19 17 16 21 21 O 1.42905 * 109.47064 * 179.97438 * 20 19 17 22 22 C 1.46958 * 110.99437 * 297.80251 * 13 2 1 23 23 H 1.08994 * 109.47174 * 59.99669 * 1 2 3 24 24 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46751 * 299.98886 * 1 2 3 26 26 H 1.09007 * 109.46974 * 183.09530 * 4 2 1 27 27 H 1.09002 * 109.47237 * 303.08999 * 4 2 1 28 28 H 0.97002 * 120.00070 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.48636 * 303.15528 * 14 13 2 30 30 H 1.08999 * 109.48635 * 63.21411 * 14 13 2 31 31 H 1.08996 * 109.48872 * 181.63140 * 15 14 13 32 32 H 1.08993 * 109.50742 * 61.56901 * 15 14 13 33 33 H 1.00904 * 110.99758 * 183.18840 * 16 15 14 34 34 H 1.08997 * 109.46916 * 54.89100 * 19 17 16 35 35 H 1.08997 * 109.46837 * 174.88970 * 19 17 16 36 36 H 1.08997 * 109.47222 * 299.99740 * 20 19 17 37 37 H 1.09007 * 109.47459 * 60.00236 * 20 19 17 38 38 H 0.96696 * 114.00103 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.48879 * 296.77768 * 22 13 2 40 40 H 1.08996 * 109.49489 * 56.84621 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6012 0.0323 -2.4785 6 1 1.0858 0.9761 -2.3781 7 6 1.8578 -0.4832 -3.7314 8 7 2.4851 -1.6326 -3.8536 9 14 1.3146 0.4511 -5.2549 10 1 2.3984 1.3713 -5.6840 11 1 1.0209 -0.5111 -6.3473 12 1 0.0927 1.2360 -4.9449 13 7 2.0198 -0.6927 1.1993 14 6 3.4818 -0.8376 1.1637 15 6 3.9430 -1.6317 2.3880 16 7 3.5152 -0.9357 3.6096 17 6 2.0532 -0.7907 3.6453 18 1 1.5894 -1.7771 3.6349 19 6 1.6448 -0.0479 4.9190 20 6 1.9944 -0.9001 6.1407 21 8 1.6134 -0.2061 7.3304 22 6 1.5920 0.0033 2.4209 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.1286 -0.7695 -1.2221 27 1 1.6321 -1.7316 -1.2777 28 1 2.6653 -1.9955 -4.7349 29 1 3.7727 -1.3667 0.2563 30 1 3.9453 0.1489 1.1743 31 1 5.0297 -1.7155 2.3789 32 1 3.5011 -2.6277 2.3634 33 1 3.8516 -1.4114 4.4334 34 1 2.1784 0.9009 4.9732 35 1 0.5712 0.1394 4.9019 36 1 1.4607 -1.8490 6.0865 37 1 3.0681 -1.0875 6.1578 38 1 1.8056 -0.6888 8.1459 39 1 2.0341 0.9994 2.4457 40 1 0.5053 0.0872 2.4301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710441986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:57 Heat of formation + Delta-G solvation = -79.598147 kcal Electronic energy + Delta-G solvation = -18149.275403 eV Core-core repulsion = 15383.291031 eV Total energy + Delta-G solvation = -2765.984371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52307 -38.13767 -36.89051 -34.84007 -33.65847 -32.14063 -29.95211 -28.63086 -26.77575 -25.41538 -23.81315 -22.60804 -20.87146 -20.60957 -18.77399 -18.41947 -17.31278 -16.65128 -16.61174 -15.94335 -15.85071 -15.37899 -15.19625 -14.95717 -14.68214 -14.17339 -14.00465 -13.54906 -13.15065 -13.05982 -12.81739 -12.70107 -12.54943 -12.30327 -12.25494 -12.11873 -11.95932 -11.70569 -11.52137 -11.13824 -10.98135 -10.82520 -10.51234 -9.50512 -9.18299 -8.18467 -6.27828 1.40263 1.41099 1.52130 2.40611 2.92102 3.14120 3.16415 3.40964 3.84653 4.04608 4.14783 4.22035 4.27806 4.30746 4.37558 4.44520 4.52612 4.61491 4.62400 4.69898 4.77485 4.88047 4.94650 4.99662 5.09099 5.15389 5.21000 5.28460 5.41179 5.47446 5.69834 5.78087 5.93358 6.09817 6.30670 6.35011 6.50723 6.87305 6.92874 7.40023 8.93650 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051132 B = 0.004561 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.466071 B = 6137.058985 C = 6518.181527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.094 3.906 3 H 0.015 0.985 4 C 0.041 3.959 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.263 1.263 13 N -0.542 5.542 14 C 0.053 3.947 15 C 0.071 3.929 16 N -0.688 5.688 17 C 0.102 3.898 18 H 0.048 0.952 19 C -0.107 4.107 20 C 0.079 3.921 21 O -0.594 6.594 22 C 0.059 3.941 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.063 0.937 26 H -0.007 1.007 27 H -0.005 1.005 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.353 0.647 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.398 0.602 39 H 0.026 0.974 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 0.174 19.123 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.014 4.014 3 H 0.033 0.967 4 C 0.004 3.996 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.187 1.187 13 N -0.267 5.267 14 C -0.075 4.075 15 C -0.059 4.059 16 N -0.322 5.322 17 C -0.008 4.008 18 H 0.066 0.934 19 C -0.146 4.146 20 C 0.001 3.999 21 O -0.403 6.403 22 C -0.069 4.069 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.011 0.989 27 H 0.013 0.987 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.044 0.956 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.394 0.649 18.316 18.331 hybrid contribution 0.268 -0.291 -0.729 0.829 sum -0.125 0.358 17.587 17.591 Atomic orbital electron populations 1.21637 0.93744 1.01403 1.01000 1.21559 0.96231 0.94001 0.89589 0.96678 1.19013 0.94410 0.94835 0.91349 1.21568 1.37209 1.06474 0.91913 0.92259 1.25903 0.95277 0.95855 1.02517 1.70101 1.42673 1.20112 1.24293 0.85499 0.78972 0.78329 0.78564 1.20003 1.20803 1.18704 1.62223 1.11241 1.51056 1.02141 1.22168 0.87853 0.98809 0.98674 1.21897 1.00616 0.94761 0.88614 1.60552 1.11087 1.55676 1.04918 1.21345 0.88078 0.97869 0.93516 0.93444 1.21442 1.02074 0.99447 0.91630 1.22146 0.99091 0.94276 0.84343 1.86427 1.86798 1.49818 1.17256 1.22253 1.00640 0.95105 0.88926 0.92743 0.93358 0.91814 0.98864 0.98658 0.92867 0.91720 0.95895 0.88674 0.94456 0.82695 0.91489 0.90655 0.92761 0.92303 0.75213 0.95574 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.82 71.98 0.63 -4.04 16 2 C 0.09 4.08 2.11 44.92 0.09 4.18 16 3 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 4 C 0.04 2.21 4.15 29.85 0.12 2.34 16 5 C -0.53 -30.41 8.29 25.60 0.21 -30.19 16 6 H 0.06 3.26 7.12 -2.91 -0.02 3.24 16 7 C 0.00 0.13 5.46 84.66 0.46 0.59 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.54 -20.30 4.58 -870.47 -3.98 -24.28 16 14 C 0.05 1.94 5.18 86.31 0.45 2.38 16 15 C 0.07 1.92 6.72 86.31 0.58 2.50 16 16 N -0.69 -16.19 6.54 -491.14 -3.21 -19.41 16 17 C 0.10 2.47 2.65 44.92 0.12 2.59 16 18 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 19 C -0.11 -2.20 5.26 30.59 0.16 -2.04 16 20 C 0.08 1.25 6.82 71.98 0.49 1.74 16 21 O -0.59 -10.02 13.66 -148.98 -2.04 -12.06 16 22 C 0.06 1.79 4.64 86.31 0.40 2.19 16 23 H 0.05 2.23 6.92 -2.39 -0.02 2.21 16 24 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.06 2.04 6.38 -2.39 -0.02 2.02 16 26 H -0.01 -0.39 6.08 -2.38 -0.01 -0.41 16 27 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.06 2.70 5.96 -2.39 -0.01 2.69 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.35 6.28 7.10 -89.69 -0.64 5.65 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.78 6.70 -2.38 -0.02 0.77 16 38 H 0.40 2.80 9.12 -74.06 -0.68 2.12 16 39 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.09 2.46 6.20 -2.39 -0.01 2.44 16 Total: -1.00 -67.67 308.48 -3.48 -71.16 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.29 Total: 12.44 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 3.73 Total: -17.75 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -6.91 Total: -100.37 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -2.04 Total: -12.06 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.67 -3.48 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.442 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds