Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46835 * 2 1 4 4 C 1.52999 * 109.47217 * 119.99436 * 2 1 3 5 5 C 1.50702 * 109.47290 * 185.00471 * 4 2 1 6 6 H 1.08000 * 119.99510 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00000 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99785 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47182 * 90.00400 * 9 7 5 11 11 H 1.48504 * 109.46924 * 209.99736 * 9 7 5 12 12 H 1.48499 * 109.47408 * 329.99975 * 9 7 5 13 13 N 1.46896 * 109.47315 * 239.99642 * 2 1 3 14 14 C 1.46953 * 110.99917 * 296.20229 * 13 2 1 15 15 C 1.53055 * 109.36133 * 183.19048 * 14 13 2 16 16 N 1.46953 * 109.36337 * 301.59128 * 15 14 13 17 17 C 1.46958 * 110.87956 * 59.32608 * 16 15 14 18 18 H 1.09000 * 109.50844 * 60.65279 * 17 16 15 19 19 C 1.52998 * 109.49195 * 180.71331 * 17 16 15 20 20 C 1.52999 * 109.46788 * 294.89006 * 19 17 16 21 21 O 1.42903 * 109.47256 * 180.02562 * 20 19 17 22 22 C 1.46963 * 110.99752 * 59.99976 * 13 2 1 23 23 H 1.09003 * 109.47093 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47204 * 300.00275 * 1 2 3 25 25 H 1.08997 * 109.47241 * 60.00544 * 1 2 3 26 26 H 1.09005 * 109.47326 * 305.00382 * 4 2 1 27 27 H 1.09003 * 109.47010 * 65.00021 * 4 2 1 28 28 H 0.97004 * 120.00129 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.48882 * 303.14851 * 14 13 2 30 30 H 1.08992 * 109.49049 * 63.21858 * 14 13 2 31 31 H 1.09002 * 109.49337 * 61.55838 * 15 14 13 32 32 H 1.09005 * 109.48887 * 181.60524 * 15 14 13 33 33 H 1.00898 * 111.00243 * 295.46088 * 16 15 14 34 34 H 1.08997 * 109.47384 * 174.88849 * 19 17 16 35 35 H 1.08997 * 109.47329 * 54.88592 * 19 17 16 36 36 H 1.08997 * 109.47286 * 59.99783 * 20 19 17 37 37 H 1.09008 * 109.47201 * 299.99563 * 20 19 17 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.49071 * 56.84201 * 22 13 2 40 40 H 1.09002 * 109.48499 * 296.77689 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6147 1.3128 6 1 4.0790 -0.0859 0.5392 7 6 4.2305 -1.1932 2.3579 8 7 3.5766 -1.8383 3.2991 9 14 6.0922 -1.0618 2.4362 10 1 6.4710 0.1604 3.1898 11 1 6.6444 -2.2574 3.1225 12 1 6.6414 -0.9840 1.0587 13 7 2.0197 -0.6925 -1.1993 14 6 1.6242 -2.1078 -1.1886 15 6 2.2194 -2.8103 -2.4113 16 7 1.7481 -2.1440 -3.6334 17 6 2.1436 -0.7287 -3.6442 18 1 3.2306 -0.6543 -3.6130 19 6 1.6226 -0.0628 -4.9193 20 6 2.3122 -0.6823 -6.1364 21 8 1.8261 -0.0599 -7.3274 22 6 1.5485 -0.0262 -2.4215 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.6054 -0.2616 2.1370 27 1 1.7517 -1.7714 1.2057 28 1 4.0610 -2.2450 4.0346 29 1 1.9954 -2.5823 -0.2802 30 1 0.5372 -2.1818 -1.2199 31 1 3.3073 -2.7598 -2.3660 32 1 1.9038 -3.8536 -2.4207 33 1 0.7490 -2.2410 -3.7359 34 1 1.8368 1.0054 -4.8849 35 1 0.5460 -0.2152 -4.9950 36 1 2.0980 -1.7505 -6.1708 37 1 3.3889 -0.5299 -6.0608 38 1 2.2206 -0.4043 -8.1404 39 1 1.8644 1.0170 -2.4119 40 1 0.4606 -0.0767 -2.4668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710441990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -53.514672 kcal Electronic energy + Delta-G solvation = -18456.046104 eV Core-core repulsion = 15691.192797 eV Total energy + Delta-G solvation = -2764.853307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41656 -37.09571 -35.54788 -32.68733 -32.36688 -30.15174 -28.51458 -27.30419 -25.00595 -23.45897 -22.68401 -21.60149 -20.41296 -18.67851 -17.37393 -16.18968 -15.71522 -15.41039 -14.87033 -14.80708 -14.35259 -14.21525 -14.00094 -13.53577 -12.95678 -12.64210 -12.16985 -11.91566 -11.83153 -11.68706 -11.50553 -11.35941 -11.01131 -10.78677 -10.67518 -10.62691 -10.55086 -10.39736 -9.97669 -9.92008 -9.20038 -9.03325 -8.29960 -8.19396 -7.50684 -5.92194 -3.90622 3.37135 3.43514 3.48601 4.03250 4.36111 4.53391 4.59798 5.02147 5.17168 5.34711 5.41178 5.45566 5.47740 5.56788 5.60752 5.65397 5.78051 5.84007 5.87174 5.96554 5.99669 6.05921 6.06785 6.23330 6.39664 6.49288 6.56057 6.68529 6.91981 7.16413 7.44769 7.54221 7.55727 7.65084 7.86748 7.95959 8.09037 8.53680 9.15816 9.71775 11.19623 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.005801 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.484901 B = 4825.351481 C = 5241.417097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.027 3.973 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.506 5.506 14 C 0.016 3.984 15 C 0.060 3.940 16 N -0.683 5.683 17 C 0.092 3.908 18 H 0.090 0.910 19 C -0.109 4.109 20 C 0.081 3.919 21 O -0.583 6.583 22 C 0.021 3.979 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.332 0.668 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.376 0.624 39 H 0.072 0.928 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 0.486 -15.391 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.113 4.113 15 C -0.070 4.070 16 N -0.312 5.312 17 C -0.018 4.018 18 H 0.108 0.892 19 C -0.147 4.147 20 C 0.004 3.996 21 O -0.388 6.388 22 C -0.109 4.109 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.222 0.778 39 H 0.091 0.909 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.947 0.528 -15.167 15.681 hybrid contribution -0.185 0.075 0.582 0.616 sum -4.132 0.603 -14.585 15.171 Atomic orbital electron populations 1.22513 0.99913 1.01115 1.00731 1.21929 0.89951 0.98542 0.91763 0.91198 1.19262 0.96491 0.95335 0.89882 1.21167 0.91688 1.33136 1.07114 0.92116 1.25003 0.98076 0.95775 0.95934 1.69963 1.35298 1.36819 1.12346 0.86629 0.86290 0.77246 0.78030 1.20980 1.21538 1.19884 1.62227 1.58692 1.01346 1.00724 1.22853 0.96683 0.90516 1.01243 1.22100 1.01528 0.96751 0.86582 1.60910 1.18708 1.13089 1.38505 1.21552 1.01099 0.87206 0.91967 0.89157 1.21490 1.00549 1.00164 0.92534 1.22135 0.96751 0.96645 0.84065 1.86443 1.69690 1.66065 1.16606 1.22805 0.96929 0.99304 0.91880 0.93170 0.92506 0.94064 0.96366 0.96145 0.93277 0.88184 0.96108 0.89930 0.90868 0.85165 0.90961 0.91656 0.92350 0.93921 0.77751 0.90939 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.50 37.16 0.32 -2.88 16 2 C 0.09 1.75 2.37 -67.71 -0.16 1.59 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.68 4.14 -27.88 -0.12 0.57 16 5 C -0.49 -13.65 8.84 -34.44 -0.30 -13.96 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.45 4.45 -226.48 -1.01 -10.45 16 14 C 0.02 0.29 4.84 -3.77 -0.02 0.27 16 15 C 0.06 0.89 6.72 -3.77 -0.03 0.86 16 16 N -0.68 -8.92 6.02 -106.58 -0.64 -9.56 16 17 C 0.09 1.24 2.59 -67.65 -0.18 1.06 16 18 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 19 C -0.11 -1.27 5.19 -26.73 -0.14 -1.41 16 20 C 0.08 0.88 6.94 37.16 0.26 1.14 16 21 O -0.58 -6.29 13.66 -35.23 -0.48 -6.78 16 22 C 0.02 0.32 4.41 -3.76 -0.02 0.30 16 23 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.64 6.48 -51.93 -0.34 0.30 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.54 6.00 -51.93 -0.31 0.23 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.10 2.09 5.95 -51.93 -0.31 1.78 16 30 H 0.02 0.35 6.57 -51.93 -0.34 0.01 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.33 4.04 8.79 -39.29 -0.35 3.69 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.63 7.76 -51.93 -0.40 0.23 16 37 H 0.04 0.45 8.14 -51.92 -0.42 0.02 16 38 H 0.38 2.31 9.12 45.56 0.42 2.73 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.40 6.48 -51.93 -0.34 0.07 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.34 309.44 -8.31 -38.65 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.08 Total: 3.90 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.48 Total: -11.08 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.91 Total: -46.25 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.48 Total: -6.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.34 -8.31 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.867 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds