Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46835 * 2 1 4 4 C 1.52999 * 109.47217 * 119.99436 * 2 1 3 5 5 C 1.50702 * 109.47290 * 185.00471 * 4 2 1 6 6 H 1.08000 * 119.99510 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00000 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99785 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47182 * 90.00400 * 9 7 5 11 11 H 1.48504 * 109.46924 * 209.99736 * 9 7 5 12 12 H 1.48499 * 109.47408 * 329.99975 * 9 7 5 13 13 N 1.46896 * 109.47315 * 239.99642 * 2 1 3 14 14 C 1.46953 * 110.99917 * 296.20229 * 13 2 1 15 15 C 1.53055 * 109.36133 * 183.19048 * 14 13 2 16 16 N 1.46953 * 109.36337 * 301.59128 * 15 14 13 17 17 C 1.46958 * 110.87956 * 59.32608 * 16 15 14 18 18 H 1.09000 * 109.50844 * 60.65279 * 17 16 15 19 19 C 1.52998 * 109.49195 * 180.71331 * 17 16 15 20 20 C 1.52999 * 109.46788 * 294.89006 * 19 17 16 21 21 O 1.42903 * 109.47256 * 180.02562 * 20 19 17 22 22 C 1.46963 * 110.99752 * 59.99976 * 13 2 1 23 23 H 1.09003 * 109.47093 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47204 * 300.00275 * 1 2 3 25 25 H 1.08997 * 109.47241 * 60.00544 * 1 2 3 26 26 H 1.09005 * 109.47326 * 305.00382 * 4 2 1 27 27 H 1.09003 * 109.47010 * 65.00021 * 4 2 1 28 28 H 0.97004 * 120.00129 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.48882 * 303.14851 * 14 13 2 30 30 H 1.08992 * 109.49049 * 63.21858 * 14 13 2 31 31 H 1.09002 * 109.49337 * 61.55838 * 15 14 13 32 32 H 1.09005 * 109.48887 * 181.60524 * 15 14 13 33 33 H 1.00898 * 111.00243 * 295.46088 * 16 15 14 34 34 H 1.08997 * 109.47384 * 174.88849 * 19 17 16 35 35 H 1.08997 * 109.47329 * 54.88592 * 19 17 16 36 36 H 1.08997 * 109.47286 * 59.99783 * 20 19 17 37 37 H 1.09008 * 109.47201 * 299.99563 * 20 19 17 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.49071 * 56.84201 * 22 13 2 40 40 H 1.09002 * 109.48499 * 296.77689 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5420 -0.6147 1.3128 6 1 4.0790 -0.0859 0.5392 7 6 4.2305 -1.1932 2.3579 8 7 3.5766 -1.8383 3.2991 9 14 6.0922 -1.0618 2.4362 10 1 6.4710 0.1604 3.1898 11 1 6.6444 -2.2574 3.1225 12 1 6.6414 -0.9840 1.0587 13 7 2.0197 -0.6925 -1.1993 14 6 1.6242 -2.1078 -1.1886 15 6 2.2194 -2.8103 -2.4113 16 7 1.7481 -2.1440 -3.6334 17 6 2.1436 -0.7287 -3.6442 18 1 3.2306 -0.6543 -3.6130 19 6 1.6226 -0.0628 -4.9193 20 6 2.3122 -0.6823 -6.1364 21 8 1.8261 -0.0599 -7.3274 22 6 1.5485 -0.0262 -2.4215 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.6054 -0.2616 2.1370 27 1 1.7517 -1.7714 1.2057 28 1 4.0610 -2.2450 4.0346 29 1 1.9954 -2.5823 -0.2802 30 1 0.5372 -2.1818 -1.2199 31 1 3.3073 -2.7598 -2.3660 32 1 1.9038 -3.8536 -2.4207 33 1 0.7490 -2.2410 -3.7359 34 1 1.8368 1.0054 -4.8849 35 1 0.5460 -0.2152 -4.9950 36 1 2.0980 -1.7505 -6.1708 37 1 3.3889 -0.5299 -6.0608 38 1 2.2206 -0.4043 -8.1404 39 1 1.8644 1.0170 -2.4119 40 1 0.4606 -0.0767 -2.4668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710441990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -77.916678 kcal Electronic energy + Delta-G solvation = -18457.104254 eV Core-core repulsion = 15691.192797 eV Total energy + Delta-G solvation = -2765.911457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73206 -38.06686 -36.85020 -34.70244 -33.53514 -31.74517 -29.68673 -29.09171 -26.32695 -25.13225 -24.10961 -22.83292 -21.59188 -20.21717 -18.38214 -18.20180 -16.95403 -16.62602 -16.55736 -16.07574 -15.86056 -15.41671 -15.18518 -14.74311 -14.48765 -14.11531 -13.72766 -13.62315 -13.24491 -13.11238 -12.85379 -12.67723 -12.54355 -12.40822 -12.17471 -12.04464 -11.91944 -11.76662 -11.68101 -11.12679 -11.02766 -10.77902 -10.49246 -9.40801 -8.92061 -8.12055 -6.17336 1.41089 1.41646 1.53269 2.46013 2.92371 3.22826 3.27665 3.47881 4.03031 4.11524 4.16808 4.19961 4.24883 4.32091 4.41833 4.45192 4.51713 4.53842 4.65056 4.77770 4.80761 4.90560 4.93633 5.05793 5.11542 5.13486 5.17198 5.23639 5.33132 5.46235 5.67128 5.87431 5.98331 6.26813 6.39523 6.46681 6.50928 6.96209 6.96524 7.49096 8.99839 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.005801 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.484901 B = 4825.351481 C = 5241.417097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.501 4.501 6 H 0.055 0.945 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.527 5.527 14 C 0.023 3.977 15 C 0.070 3.930 16 N -0.671 5.671 17 C 0.101 3.899 18 H 0.076 0.924 19 C -0.102 4.102 20 C 0.086 3.914 21 O -0.598 6.598 22 C 0.024 3.976 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.066 0.934 26 H -0.011 1.011 27 H 0.002 0.998 28 H 0.259 0.741 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.342 0.658 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.396 0.604 39 H 0.073 0.927 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 0.742 -17.423 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.250 5.250 14 C -0.107 4.107 15 C -0.060 4.060 16 N -0.300 5.300 17 C -0.010 4.010 18 H 0.094 0.906 19 C -0.140 4.140 20 C 0.008 3.992 21 O -0.406 6.406 22 C -0.106 4.106 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.008 0.992 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.160 0.840 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.245 0.755 39 H 0.091 0.909 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.972 0.787 -17.236 17.705 hybrid contribution -0.202 0.004 1.187 1.204 sum -4.174 0.791 -16.049 16.602 Atomic orbital electron populations 1.22365 0.97393 1.01388 1.01978 1.21630 0.91922 0.97319 0.90668 0.92021 1.19105 0.95326 0.94527 0.91325 1.21442 0.93118 1.32583 1.06780 0.92633 1.25820 1.02806 0.95508 0.95651 1.70086 1.37126 1.37844 1.13025 0.85586 0.80651 0.77396 0.78213 1.20230 1.21138 1.19249 1.62126 1.59669 1.01949 1.01305 1.22760 0.97219 0.89967 1.00752 1.21982 1.00306 0.97716 0.85984 1.60881 1.19493 1.12741 1.36918 1.21448 1.00182 0.87238 0.92095 0.90621 1.21389 1.00744 0.99980 0.91902 1.22031 0.96676 0.96540 0.83906 1.86387 1.70206 1.66509 1.17521 1.22868 0.97611 0.99242 0.90848 0.93331 0.92509 0.91528 0.99238 0.98008 0.93216 0.92258 0.95104 0.91710 0.88849 0.83962 0.90927 0.91228 0.92145 0.93731 0.75452 0.90873 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 8.50 71.98 0.61 -5.20 16 2 C 0.09 3.80 2.37 44.92 0.11 3.90 16 3 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 4 C 0.03 1.78 4.14 29.85 0.12 1.90 16 5 C -0.50 -28.40 8.84 25.60 0.23 -28.17 16 6 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.53 -19.45 4.45 -870.46 -3.88 -23.32 16 14 C 0.02 0.79 4.84 86.31 0.42 1.21 16 15 C 0.07 2.00 6.72 86.31 0.58 2.58 16 16 N -0.67 -15.98 6.02 -491.12 -2.96 -18.94 16 17 C 0.10 2.51 2.59 44.92 0.12 2.62 16 18 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 19 C -0.10 -2.12 5.19 30.59 0.16 -1.96 16 20 C 0.09 1.64 6.94 71.98 0.50 2.14 16 21 O -0.60 -11.31 13.66 -148.98 -2.04 -13.34 16 22 C 0.02 0.69 4.41 86.31 0.38 1.07 16 23 H 0.05 1.64 6.56 -2.39 -0.02 1.62 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 1.91 6.48 -2.39 -0.02 1.89 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H 0.00 0.10 6.00 -2.39 -0.01 0.08 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.06 2.56 5.95 -2.38 -0.01 2.55 16 30 H 0.03 1.01 6.57 -2.39 -0.02 0.99 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.34 7.27 8.79 -89.70 -0.79 6.48 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.13 7.76 -2.39 -0.02 1.11 16 37 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.40 3.81 9.12 -74.06 -0.68 3.14 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.04 1.03 6.48 -2.39 -0.02 1.01 16 Total: -1.00 -65.45 309.44 -3.31 -68.76 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.44 Total: 16.02 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.68 Total: -19.54 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -6.55 Total: -99.32 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -2.04 Total: -13.34 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.45 -3.31 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.154 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds