Wall clock time and date at job start Mon Mar 30 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47022 * 2 1 4 4 C 1.52994 * 109.47556 * 120.00356 * 2 1 3 5 5 C 1.50701 * 109.47408 * 183.69312 * 4 2 1 6 6 H 1.07994 * 119.99785 * 5.06409 * 5 4 2 7 7 C 1.37875 * 119.99661 * 185.07066 * 5 4 2 8 8 N 1.31521 * 119.99499 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00317 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46739 * 90.00645 * 9 7 5 11 11 H 1.48496 * 109.47150 * 210.00199 * 9 7 5 12 12 H 1.48492 * 109.47006 * 330.00429 * 9 7 5 13 13 N 1.46902 * 109.47210 * 240.00819 * 2 1 3 14 14 C 1.46948 * 111.00357 * 72.32503 * 13 2 1 15 15 C 1.53057 * 109.36541 * 176.81144 * 14 13 2 16 16 N 1.46957 * 109.36201 * 58.40374 * 15 14 13 17 17 C 1.46956 * 110.87795 * 300.67592 * 16 15 14 18 18 H 1.08994 * 109.49244 * 299.35365 * 17 16 15 19 19 C 1.53008 * 109.48553 * 179.28790 * 17 16 15 20 20 C 1.52999 * 109.46950 * 65.11497 * 19 17 16 21 21 O 1.42899 * 109.46791 * 179.97438 * 20 19 17 22 22 C 1.46957 * 110.99627 * 308.52304 * 13 2 1 23 23 H 1.08998 * 109.47546 * 299.99406 * 1 2 3 24 24 H 1.08999 * 109.47146 * 59.99916 * 1 2 3 25 25 H 1.09009 * 109.46780 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47222 * 303.69290 * 4 2 1 27 27 H 1.08999 * 109.47346 * 63.69003 * 4 2 1 28 28 H 0.97002 * 119.99659 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.49160 * 56.84861 * 14 13 2 30 30 H 1.09003 * 109.49280 * 296.78244 * 14 13 2 31 31 H 1.09003 * 109.48653 * 298.43628 * 15 14 13 32 32 H 1.08999 * 109.50624 * 178.37945 * 15 14 13 33 33 H 1.00901 * 110.99531 * 176.81557 * 16 15 14 34 34 H 1.08997 * 109.46747 * 185.11153 * 19 17 16 35 35 H 1.09000 * 109.47116 * 305.10801 * 19 17 16 36 36 H 1.09003 * 109.47065 * 299.99885 * 20 19 17 37 37 H 1.08998 * 109.47263 * 59.99686 * 20 19 17 38 38 H 0.96706 * 113.99288 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.48812 * 63.22845 * 22 13 2 40 40 H 1.09001 * 109.49363 * 303.15876 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5443 -0.6425 1.2957 6 1 4.0776 -0.0607 0.5585 7 6 4.2395 -1.3133 2.2794 8 7 5.5523 -1.2441 2.3203 9 14 3.3169 -2.3191 3.5548 10 1 3.1567 -3.7119 3.0653 11 1 4.0822 -2.3267 4.8274 12 1 1.9787 -1.7184 3.7854 13 7 2.0196 -0.6923 -1.1995 14 6 1.8025 0.1221 -2.4033 15 6 2.3963 -0.5974 -3.6167 16 7 1.7661 -1.9175 -3.7569 17 6 1.9833 -2.7320 -2.5531 18 1 3.0526 -2.8790 -2.4015 19 6 1.3003 -4.0903 -2.7258 20 6 1.9778 -4.8611 -3.8605 21 8 1.3403 -6.1299 -4.0214 22 6 1.3895 -2.0125 -1.3397 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6237 -0.2471 2.1380 27 1 1.7318 -1.7663 1.2166 28 1 6.0414 -1.7157 3.0126 29 1 2.2891 1.0897 -2.2803 30 1 0.7332 0.2691 -2.5550 31 1 3.4703 -0.7200 -3.4771 32 1 2.2112 -0.0088 -4.5153 33 1 2.1025 -2.3931 -4.5808 34 1 1.3836 -4.6591 -1.7998 35 1 0.2479 -3.9398 -2.9664 36 1 1.8946 -4.2922 -4.7866 37 1 3.0302 -5.0116 -3.6199 38 1 1.7189 -6.6737 -4.7258 39 1 0.3155 -1.8899 -1.4793 40 1 1.5749 -2.6013 -0.4412 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710441994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:05 Heat of formation + Delta-G solvation = -47.829844 kcal Electronic energy + Delta-G solvation = -18602.260549 eV Core-core repulsion = 15837.653755 eV Total energy + Delta-G solvation = -2764.606794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.28460 -37.14796 -35.57925 -32.84399 -32.23314 -30.39930 -28.50886 -27.77297 -25.36640 -23.37537 -22.78463 -21.16174 -19.77478 -18.63816 -17.61650 -16.55894 -16.13688 -15.64849 -15.02243 -14.55514 -14.30212 -14.05565 -13.75513 -13.65520 -13.19502 -12.83114 -12.40797 -12.01790 -11.81324 -11.68046 -11.58667 -11.41727 -11.25398 -10.89107 -10.64205 -10.52031 -10.40342 -10.05935 -9.93616 -9.69321 -9.52103 -9.02209 -8.41624 -8.33603 -7.48404 -5.90784 -3.84424 3.35811 3.43711 3.46419 4.05635 4.29705 4.54300 4.57056 4.97696 5.04657 5.26594 5.38090 5.43187 5.44147 5.55642 5.65919 5.67792 5.73530 5.75723 5.87606 5.92341 5.99708 6.05061 6.14628 6.25763 6.37568 6.40411 6.51376 6.56371 6.80747 7.12867 7.16035 7.30298 7.44988 7.51581 7.79994 7.84282 7.98004 8.72150 9.20776 9.72436 11.23337 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.007472 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.581056 B = 3746.314978 C = 4428.597885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.488 4.488 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.510 5.510 14 C 0.055 3.945 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.092 3.908 18 H 0.053 0.947 19 C -0.113 4.113 20 C 0.076 3.924 21 O -0.575 6.575 22 C 0.066 3.934 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.333 0.667 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.376 0.624 39 H 0.036 0.964 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -3.260 -12.955 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.043 4.043 5 C -0.526 4.526 6 H 0.095 0.905 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.233 5.233 14 C -0.074 4.074 15 C -0.069 4.069 16 N -0.320 5.320 17 C -0.018 4.018 18 H 0.071 0.929 19 C -0.151 4.151 20 C -0.002 4.002 21 O -0.380 6.380 22 C -0.063 4.063 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.223 0.777 39 H 0.054 0.946 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.806 -2.921 -12.083 15.234 hybrid contribution 0.125 -0.898 0.064 0.909 sum -8.681 -3.819 -12.020 15.311 Atomic orbital electron populations 1.22548 0.99553 1.01473 1.00940 1.21674 0.90011 0.98332 0.91142 0.90749 1.19667 0.97991 0.94981 0.91674 1.21015 0.89159 1.29873 1.12553 0.90530 1.25003 0.94657 0.96618 0.97524 1.69916 1.06108 1.44241 1.34643 0.86908 0.80358 0.81097 0.81633 1.20547 1.21633 1.19332 1.62211 1.57504 1.02133 1.01446 1.22135 0.98429 0.96670 0.90182 1.21967 0.96993 0.90125 0.97796 1.60649 1.62379 1.04348 1.04637 1.21488 0.98733 0.91179 0.90442 0.92905 1.21535 1.00899 0.94204 0.98489 1.22224 0.95615 0.84075 0.98284 1.86491 1.62049 1.29990 1.59453 1.22112 0.95811 0.91412 0.96934 0.92558 0.93704 0.92763 0.96545 0.96947 0.93107 0.90828 0.94909 0.94096 0.91016 0.84869 0.90539 0.90583 0.93656 0.93741 0.77746 0.94598 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.39 37.15 0.31 -2.78 16 2 C 0.10 1.91 2.26 -67.72 -0.15 1.76 16 3 H 0.07 1.51 7.98 -51.93 -0.41 1.10 16 4 C -0.01 -0.13 3.46 -27.89 -0.10 -0.23 16 5 C -0.49 -13.83 9.36 -34.44 -0.32 -14.15 16 6 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 9 Si 0.87 22.03 27.37 -169.99 -4.65 17.38 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.52 6.69 56.52 0.38 -6.14 16 13 N -0.51 -9.69 4.32 -226.49 -0.98 -10.67 16 14 C 0.05 0.86 5.36 -3.77 -0.02 0.84 16 15 C 0.06 0.84 6.72 -3.76 -0.03 0.82 16 16 N -0.69 -9.20 6.54 -106.58 -0.70 -9.90 16 17 C 0.09 1.39 2.65 -67.65 -0.18 1.21 16 18 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.11 -1.52 5.26 -26.73 -0.14 -1.66 16 20 C 0.08 0.86 6.82 37.16 0.25 1.11 16 21 O -0.57 -6.60 13.66 -35.23 -0.48 -7.09 16 22 C 0.07 1.15 3.98 -3.76 -0.01 1.14 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.68 6.85 -51.93 -0.36 0.32 16 25 H 0.05 0.89 6.39 -51.92 -0.33 0.56 16 26 H 0.02 0.39 7.55 -51.92 -0.39 0.00 16 27 H 0.01 0.30 5.57 -51.93 -0.29 0.01 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.03 0.51 6.85 -51.93 -0.36 0.15 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.33 3.74 7.10 -39.29 -0.28 3.46 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.44 6.70 -51.93 -0.35 0.09 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.38 2.46 9.12 45.56 0.42 2.87 16 39 H 0.04 0.61 6.41 -51.93 -0.33 0.28 16 40 H 0.08 1.64 6.37 -51.93 -0.33 1.31 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -32.21 304.72 -7.90 -40.11 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.97 Total: 3.43 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.48 Total: -10.24 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.90 Total: -48.18 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.48 Total: -7.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.65 Total: 17.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.21 -7.90 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.723 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds