Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47022 * 2 1 4 4 C 1.52994 * 109.47556 * 120.00356 * 2 1 3 5 5 C 1.50701 * 109.47408 * 183.69312 * 4 2 1 6 6 H 1.07994 * 119.99785 * 5.06409 * 5 4 2 7 7 C 1.37875 * 119.99661 * 185.07066 * 5 4 2 8 8 N 1.31521 * 119.99499 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00317 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46739 * 90.00645 * 9 7 5 11 11 H 1.48496 * 109.47150 * 210.00199 * 9 7 5 12 12 H 1.48492 * 109.47006 * 330.00429 * 9 7 5 13 13 N 1.46902 * 109.47210 * 240.00819 * 2 1 3 14 14 C 1.46948 * 111.00357 * 72.32503 * 13 2 1 15 15 C 1.53057 * 109.36541 * 176.81144 * 14 13 2 16 16 N 1.46957 * 109.36201 * 58.40374 * 15 14 13 17 17 C 1.46956 * 110.87795 * 300.67592 * 16 15 14 18 18 H 1.08994 * 109.49244 * 299.35365 * 17 16 15 19 19 C 1.53008 * 109.48553 * 179.28790 * 17 16 15 20 20 C 1.52999 * 109.46950 * 65.11497 * 19 17 16 21 21 O 1.42899 * 109.46791 * 179.97438 * 20 19 17 22 22 C 1.46957 * 110.99627 * 308.52304 * 13 2 1 23 23 H 1.08998 * 109.47546 * 299.99406 * 1 2 3 24 24 H 1.08999 * 109.47146 * 59.99916 * 1 2 3 25 25 H 1.09009 * 109.46780 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47222 * 303.69290 * 4 2 1 27 27 H 1.08999 * 109.47346 * 63.69003 * 4 2 1 28 28 H 0.97002 * 119.99659 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.49160 * 56.84861 * 14 13 2 30 30 H 1.09003 * 109.49280 * 296.78244 * 14 13 2 31 31 H 1.09003 * 109.48653 * 298.43628 * 15 14 13 32 32 H 1.08999 * 109.50624 * 178.37945 * 15 14 13 33 33 H 1.00901 * 110.99531 * 176.81557 * 16 15 14 34 34 H 1.08997 * 109.46747 * 185.11153 * 19 17 16 35 35 H 1.09000 * 109.47116 * 305.10801 * 19 17 16 36 36 H 1.09003 * 109.47065 * 299.99885 * 20 19 17 37 37 H 1.08998 * 109.47263 * 59.99686 * 20 19 17 38 38 H 0.96706 * 113.99288 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.48812 * 63.22845 * 22 13 2 40 40 H 1.09001 * 109.49363 * 303.15876 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5443 -0.6425 1.2957 6 1 4.0776 -0.0607 0.5585 7 6 4.2395 -1.3133 2.2794 8 7 5.5523 -1.2441 2.3203 9 14 3.3169 -2.3191 3.5548 10 1 3.1567 -3.7119 3.0653 11 1 4.0822 -2.3267 4.8274 12 1 1.9787 -1.7184 3.7854 13 7 2.0196 -0.6923 -1.1995 14 6 1.8025 0.1221 -2.4033 15 6 2.3963 -0.5974 -3.6167 16 7 1.7661 -1.9175 -3.7569 17 6 1.9833 -2.7320 -2.5531 18 1 3.0526 -2.8790 -2.4015 19 6 1.3003 -4.0903 -2.7258 20 6 1.9778 -4.8611 -3.8605 21 8 1.3403 -6.1299 -4.0214 22 6 1.3895 -2.0125 -1.3397 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6237 -0.2471 2.1380 27 1 1.7318 -1.7663 1.2166 28 1 6.0414 -1.7157 3.0126 29 1 2.2891 1.0897 -2.2803 30 1 0.7332 0.2691 -2.5550 31 1 3.4703 -0.7200 -3.4771 32 1 2.2112 -0.0088 -4.5153 33 1 2.1025 -2.3931 -4.5808 34 1 1.3836 -4.6591 -1.7998 35 1 0.2479 -3.9398 -2.9664 36 1 1.8946 -4.2922 -4.7866 37 1 3.0302 -5.0116 -3.6199 38 1 1.7189 -6.6737 -4.7258 39 1 0.3155 -1.8899 -1.4793 40 1 1.5749 -2.6013 -0.4412 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710441994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = -74.867247 kcal Electronic energy + Delta-G solvation = -18603.432979 eV Core-core repulsion = 15837.653755 eV Total energy + Delta-G solvation = -2765.779224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.59985 -38.17241 -36.86243 -34.73495 -33.64559 -31.99560 -29.72020 -29.46983 -26.66781 -24.65878 -24.53436 -22.42535 -21.15484 -20.09628 -18.79289 -18.54042 -17.32625 -16.68472 -16.47886 -16.30833 -15.58852 -15.32109 -15.22093 -14.80943 -14.59977 -14.41036 -14.02236 -13.80318 -13.41235 -12.96635 -12.83155 -12.74372 -12.56607 -12.33829 -12.18328 -11.91240 -11.80411 -11.69345 -11.44538 -11.35109 -11.04530 -10.85713 -10.67654 -9.49724 -8.89362 -8.18607 -6.16824 1.35449 1.36688 1.47795 2.40545 2.96487 3.16508 3.18836 3.43420 3.86267 4.03782 4.07558 4.22868 4.31251 4.34433 4.39971 4.41179 4.48455 4.56848 4.57891 4.66447 4.79100 4.86917 4.93002 4.99536 5.00798 5.09136 5.13216 5.21796 5.25840 5.31725 5.51823 5.74070 5.94380 6.30824 6.41850 6.45906 6.56079 6.89744 6.90018 7.43421 8.98900 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.007472 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.581056 B = 3746.314978 C = 4428.597885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.063 0.937 4 C -0.003 4.003 5 C -0.486 4.486 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.940 3.060 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.539 5.539 14 C 0.055 3.945 15 C 0.064 3.936 16 N -0.678 5.678 17 C 0.100 3.900 18 H 0.027 0.973 19 C -0.107 4.107 20 C 0.080 3.920 21 O -0.593 6.593 22 C 0.068 3.932 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.104 0.896 33 H 0.350 0.650 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.398 0.602 39 H 0.047 0.953 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -3.850 -14.015 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 H 0.081 0.919 4 C -0.040 4.040 5 C -0.524 4.524 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.600 5.600 9 Si 0.765 3.235 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.263 5.263 14 C -0.073 4.073 15 C -0.066 4.066 16 N -0.311 5.311 17 C -0.011 4.011 18 H 0.045 0.955 19 C -0.146 4.146 20 C 0.003 3.997 21 O -0.401 6.401 22 C -0.060 4.060 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.122 0.878 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.021 -3.517 -13.182 17.539 hybrid contribution 0.873 -0.665 0.313 1.141 sum -10.148 -4.182 -12.869 16.914 Atomic orbital electron populations 1.22389 0.96470 1.02032 1.02346 1.21489 0.92388 0.97053 0.90099 0.91919 1.19607 0.94722 0.95689 0.94011 1.21233 0.91661 1.28473 1.11033 0.94823 1.25905 0.95450 0.98182 1.00106 1.70081 1.08065 1.45930 1.35958 0.85806 0.79709 0.79485 0.78500 1.19812 1.21386 1.17202 1.62120 1.58632 1.03176 1.02376 1.22194 0.99215 0.96399 0.89542 1.21982 0.95701 0.90639 0.98238 1.60625 1.62044 1.04030 1.04438 1.21302 0.97111 0.92151 0.90507 0.95517 1.21434 1.00926 0.93289 0.98940 1.22125 0.95110 0.84305 0.98185 1.86428 1.62583 1.30259 1.60842 1.22056 0.96439 0.90599 0.96898 0.91618 0.91850 0.92543 0.96228 0.96713 0.93083 0.91066 0.93774 0.95949 0.87762 0.83047 0.91962 0.90448 0.91562 0.93786 0.75232 0.93539 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.36 8.39 71.98 0.60 -4.76 16 2 C 0.10 3.85 2.26 44.91 0.10 3.95 16 3 H 0.06 2.57 7.98 -2.38 -0.02 2.55 16 4 C 0.00 -0.13 3.46 29.85 0.10 -0.03 16 5 C -0.49 -28.34 9.36 25.60 0.24 -28.10 16 6 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 7 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 8 N -0.96 -61.73 13.96 21.45 0.30 -61.43 16 9 Si 0.94 45.68 27.37 68.60 1.88 47.56 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -11.17 6.69 99.48 0.67 -10.50 16 13 N -0.54 -20.44 4.32 -870.47 -3.76 -24.20 16 14 C 0.05 1.66 5.36 86.31 0.46 2.12 16 15 C 0.06 1.66 6.72 86.31 0.58 2.24 16 16 N -0.68 -16.65 6.54 -491.10 -3.21 -19.86 16 17 C 0.10 2.95 2.65 44.93 0.12 3.07 16 18 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 19 C -0.11 -2.77 5.26 30.60 0.16 -2.60 16 20 C 0.08 1.66 6.82 71.98 0.49 2.15 16 21 O -0.59 -12.33 13.66 -148.98 -2.04 -14.37 16 22 C 0.07 2.37 3.98 86.31 0.34 2.71 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 1.73 6.85 -2.39 -0.02 1.71 16 25 H 0.06 1.72 6.39 -2.38 -0.02 1.70 16 26 H 0.02 0.91 7.55 -2.38 -0.02 0.89 16 27 H 0.01 0.69 5.57 -2.39 -0.01 0.68 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 30 H 0.04 1.25 6.85 -2.39 -0.02 1.24 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.35 6.85 7.10 -89.69 -0.64 6.21 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.09 6.70 -2.39 -0.02 1.07 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.40 4.22 9.12 -74.05 -0.68 3.55 16 39 H 0.05 1.50 6.41 -2.39 -0.02 1.48 16 40 H 0.06 2.25 6.37 -2.39 -0.02 2.24 16 Total: -1.00 -70.72 304.72 -3.49 -74.21 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.33 Total: 16.97 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.67 Total: -18.88 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -6.68 Total: -105.49 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -2.04 Total: -14.37 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -70.72 -3.49 -74.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710441994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.653 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds