Wall clock time and date at job start Mon Mar 30 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46806 * 2 1 4 4 C 1.50696 * 109.47207 * 240.00609 * 2 1 3 5 5 H 1.08003 * 119.99987 * 239.99617 * 4 2 1 6 6 C 1.37879 * 120.00305 * 59.99603 * 4 2 1 7 7 N 1.31514 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46941 * 60.00149 * 8 6 4 10 10 H 1.48506 * 109.47083 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46970 * 300.00007 * 8 6 4 12 12 N 1.46900 * 109.47230 * 120.00097 * 2 1 3 13 13 C 1.48555 * 110.99876 * 303.04601 * 12 2 1 14 14 C 1.54381 * 104.59126 * 200.95649 * 13 12 2 15 15 C 1.54255 * 105.06057 * 23.85825 * 14 13 12 16 16 O 1.42904 * 110.32649 * 241.09979 * 15 14 13 17 17 C 1.53003 * 110.32538 * 118.99606 * 15 14 13 18 18 N 1.46906 * 109.46826 * 188.46553 * 17 15 14 19 19 C 1.46907 * 110.99610 * 163.19141 * 18 17 15 20 20 C 1.46897 * 110.99894 * 287.14198 * 18 17 15 21 21 C 1.48558 * 110.99807 * 187.62537 * 12 2 1 22 22 H 1.08997 * 109.46742 * 304.87174 * 1 2 3 23 23 H 1.09000 * 109.47019 * 64.88019 * 1 2 3 24 24 H 1.09000 * 109.46652 * 184.87758 * 1 2 3 25 25 H 0.97003 * 120.00583 * 179.97438 * 7 6 4 26 26 H 1.09005 * 110.41264 * 82.18317 * 13 12 2 27 27 H 1.08994 * 110.51500 * 319.78628 * 13 12 2 28 28 H 1.08996 * 110.32767 * 264.95568 * 14 13 12 29 29 H 1.09002 * 110.40885 * 142.79527 * 14 13 12 30 30 H 0.96697 * 113.99914 * 298.54774 * 16 15 14 31 31 H 1.09000 * 109.47264 * 308.46417 * 17 15 14 32 32 H 1.08999 * 109.47399 * 68.46657 * 17 15 14 33 33 H 1.08996 * 109.46800 * 60.00215 * 19 18 17 34 34 H 1.09000 * 109.47201 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47365 * 299.99766 * 19 18 17 36 36 H 1.08999 * 109.46945 * 67.50525 * 20 18 17 37 37 H 1.09002 * 109.46852 * 187.50575 * 20 18 17 38 38 H 1.08996 * 109.47525 * 307.50249 * 20 18 17 39 39 H 1.09004 * 110.41236 * 40.26500 * 21 12 2 40 40 H 1.09001 * 110.41391 * 277.82242 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3226 -1.1192 -4.0080 9 1 1.8282 -2.5194 -4.0083 10 1 1.8280 -0.4188 -5.2205 11 1 3.8076 -1.1185 -4.0078 12 7 2.0198 -0.6925 1.1994 13 6 1.4842 -0.0627 2.4337 14 6 2.4575 -0.5024 3.5484 15 6 3.7792 -0.8261 2.8219 16 8 4.1310 -2.1971 3.0187 17 6 4.8995 0.0865 3.3250 18 7 6.0921 -0.0945 2.4865 19 6 7.0361 1.0165 2.6672 20 6 6.7384 -1.3846 2.7619 21 6 3.4933 -0.5550 1.3292 22 1 -0.3633 0.5876 0.8431 23 1 -0.3633 0.4363 -0.9305 24 1 -0.3632 -1.0240 0.0874 25 1 0.7095 1.1621 -3.4843 26 1 0.4784 -0.4282 2.6413 27 1 1.4811 1.0230 2.3381 28 1 2.0770 -1.3892 4.0553 29 1 2.6069 0.3067 4.2635 30 1 4.2784 -2.4364 3.9440 31 1 4.5730 1.1251 3.2730 32 1 5.1393 -0.1678 4.3574 33 1 7.3466 1.0633 3.7109 34 1 7.9100 0.8572 2.0354 35 1 6.5526 1.9530 2.3895 36 1 6.0895 -2.1945 2.4287 37 1 7.6876 -1.4366 2.2284 38 1 6.9178 -1.4799 3.8327 39 1 3.8062 0.4537 1.0594 40 1 4.0003 -1.2909 0.7052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713658644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:00 Heat of formation + Delta-G solvation = -56.784085 kcal Electronic energy + Delta-G solvation = -18865.426474 eV Core-core repulsion = 16100.431394 eV Total energy + Delta-G solvation = -2764.995079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75094 -38.20157 -36.66250 -35.12456 -32.71600 -30.11734 -29.90431 -28.33603 -27.26812 -26.31502 -23.70201 -22.66159 -21.26893 -20.90185 -18.48036 -17.67543 -17.14797 -16.39399 -16.32412 -16.00702 -15.62513 -15.22396 -14.89796 -14.84449 -13.96419 -13.82050 -13.56334 -13.39942 -13.20064 -13.05957 -12.82811 -12.67769 -12.54823 -12.46430 -12.33397 -12.21950 -12.01017 -11.97647 -11.71444 -11.37318 -10.95979 -10.65243 -10.50244 -9.15198 -9.04370 -8.11339 -6.22985 1.40385 1.42879 1.50700 2.42628 2.97881 3.15427 3.39409 3.44765 3.77607 3.90569 4.02386 4.24029 4.36814 4.46901 4.48617 4.59172 4.74191 4.76522 4.77247 4.81337 4.89097 4.91880 5.00493 5.01035 5.02126 5.09236 5.19748 5.29666 5.34640 5.44293 5.70678 5.75057 6.13959 6.19995 6.26979 6.35467 6.66267 6.89795 7.03059 7.45859 8.94223 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.007368 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.122072 B = 3799.134099 C = 4432.731988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.208 3.792 3 H -0.035 1.035 4 C -0.517 4.517 5 H 0.047 0.953 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.274 1.274 12 N -0.520 5.520 13 C 0.029 3.971 14 C -0.136 4.136 15 C 0.142 3.858 16 O -0.556 6.556 17 C 0.045 3.955 18 N -0.568 5.568 19 C 0.026 3.974 20 C 0.023 3.977 21 C 0.088 3.912 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.263 0.737 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.383 0.617 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.028 0.972 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -0.871 15.280 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H -0.018 1.018 4 C -0.555 4.555 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.199 1.199 12 N -0.244 5.244 13 C -0.100 4.100 14 C -0.174 4.174 15 C 0.100 3.900 16 O -0.363 6.363 17 C -0.083 4.083 18 N -0.292 5.292 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.041 4.041 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.260 -1.319 13.934 16.253 hybrid contribution 0.641 0.738 0.166 0.992 sum 8.902 -0.581 14.100 16.685 Atomic orbital electron populations 1.21637 0.97141 0.98774 1.00402 1.19194 0.92809 0.90059 0.87832 1.01798 1.21301 1.30865 1.12069 0.91270 0.93502 1.25683 0.95382 0.95809 1.01764 1.69992 1.37787 1.24081 1.24138 0.85616 0.78674 0.78771 0.78625 1.19760 1.20378 1.19942 1.65447 1.05374 1.51548 1.02068 1.23064 0.99601 0.96303 0.90999 1.22997 0.94044 1.03193 0.97176 1.21855 0.92318 0.81772 0.94071 1.86648 1.91430 1.26103 1.32138 1.22769 0.90656 0.99875 0.95031 1.61801 1.07604 1.03757 1.56063 1.22405 0.95945 0.93718 1.00072 1.22574 0.99202 0.91434 0.99218 1.22391 0.88822 0.98150 0.94718 0.95146 0.91898 0.95068 0.92831 0.90587 0.95426 0.89046 0.88509 0.76745 0.90404 0.91863 0.94460 0.91110 0.91966 0.90451 0.91969 0.94541 0.95348 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.24 8.68 71.98 0.62 -5.62 16 2 C 0.21 11.33 1.85 44.17 0.08 11.41 16 3 H -0.04 -2.12 7.94 -2.39 -0.02 -2.14 16 4 C -0.52 -30.60 8.22 25.60 0.21 -30.39 16 5 H 0.05 2.85 7.45 -2.91 -0.02 2.82 16 6 C 0.01 0.70 5.29 84.66 0.45 1.14 16 7 N -0.92 -54.89 11.29 21.45 0.24 -54.65 16 8 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.52 -23.98 5.19 -860.72 -4.47 -28.45 16 13 C 0.03 1.03 5.23 86.45 0.45 1.49 16 14 C -0.14 -3.60 6.44 31.49 0.20 -3.40 16 15 C 0.14 4.23 1.14 -9.90 -0.01 4.21 16 16 O -0.56 -15.76 10.12 -148.98 -1.51 -17.27 16 17 C 0.05 1.10 4.00 86.30 0.34 1.45 16 18 N -0.57 -15.09 4.48 -948.83 -4.25 -19.34 16 19 C 0.03 0.57 9.52 127.69 1.22 1.78 16 20 C 0.02 0.54 9.06 127.69 1.16 1.70 16 21 C 0.09 3.73 4.72 86.45 0.41 4.13 16 22 H 0.03 1.36 7.15 -2.39 -0.02 1.34 16 23 H 0.06 3.55 5.96 -2.39 -0.01 3.53 16 24 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 26 H 0.08 2.66 7.77 -2.38 -0.02 2.64 16 27 H 0.03 1.02 8.00 -2.39 -0.02 1.00 16 28 H 0.09 2.17 7.98 -2.39 -0.02 2.16 16 29 H 0.10 1.96 7.71 -2.39 -0.02 1.94 16 30 H 0.38 6.84 9.09 -74.06 -0.67 6.16 16 31 H 0.08 1.91 7.94 -2.39 -0.02 1.89 16 32 H 0.06 1.17 7.91 -2.39 -0.02 1.15 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 35 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 36 H 0.08 2.10 5.85 -2.39 -0.01 2.09 16 37 H 0.06 1.36 7.99 -2.39 -0.02 1.34 16 38 H 0.04 0.68 7.95 -2.39 -0.02 0.66 16 39 H 0.03 1.30 7.58 -2.39 -0.02 1.29 16 40 H 0.05 2.43 7.74 -2.39 -0.02 2.41 16 Total: -1.00 -68.48 308.81 -2.50 -70.98 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.33 Total: 12.79 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.13 Total: -12.10 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -8.47 Total: -102.44 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.51 Total: -17.27 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -68.48 -2.50 -70.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713658644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.191 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds