Wall clock time and date at job start Mon Mar 30 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50703 * 109.47096 * 120.00114 * 2 1 3 5 5 H 1.07990 * 120.00066 * 119.99987 * 4 2 1 6 6 C 1.37875 * 119.99464 * 299.99859 * 4 2 1 7 7 N 1.31515 * 120.00657 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99412 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47245 * 60.00046 * 8 6 4 10 10 H 1.48500 * 109.47097 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47186 * 299.99774 * 8 6 4 12 12 N 1.46900 * 109.47190 * 240.00214 * 2 1 3 13 13 C 1.47847 * 111.00033 * 60.64971 * 12 2 1 14 14 C 1.54898 * 104.79489 * 146.36460 * 13 12 2 15 15 C 1.55140 * 101.65597 * 322.92918 * 14 13 12 16 16 O 1.42902 * 110.85735 * 277.20100 * 15 14 13 17 17 C 1.52998 * 110.70846 * 154.03494 * 15 14 13 18 18 N 1.46894 * 109.47287 * 70.33468 * 17 15 14 19 19 C 1.46904 * 111.00240 * 156.89386 * 18 17 15 20 20 C 1.46905 * 111.00381 * 280.85256 * 18 17 15 21 21 C 1.47435 * 110.99847 * 181.49365 * 12 2 1 22 22 H 1.08996 * 109.47025 * 65.60107 * 1 2 3 23 23 H 1.09001 * 109.47077 * 185.60355 * 1 2 3 24 24 H 1.09005 * 109.46872 * 305.60333 * 1 2 3 25 25 H 0.96994 * 119.99832 * 179.97438 * 7 6 4 26 26 H 1.09005 * 110.37589 * 265.19440 * 13 12 2 27 27 H 1.09006 * 110.37364 * 27.53481 * 13 12 2 28 28 H 1.09004 * 110.99224 * 204.83792 * 14 13 12 29 29 H 1.09004 * 110.99199 * 81.02228 * 14 13 12 30 30 H 0.96693 * 113.99791 * 296.08647 * 16 15 14 31 31 H 1.09004 * 109.47041 * 310.33579 * 17 15 14 32 32 H 1.08996 * 109.47418 * 190.33895 * 17 15 14 33 33 H 1.08998 * 109.47049 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46893 * 60.00326 * 19 18 17 35 35 H 1.08998 * 109.46808 * 300.00085 * 19 18 17 36 36 H 1.08997 * 109.46274 * 305.53336 * 20 18 17 37 37 H 1.09002 * 109.46614 * 65.52988 * 20 18 17 38 38 H 1.08995 * 109.46830 * 185.53140 * 20 18 17 39 39 H 1.09003 * 109.88678 * 117.33697 * 21 12 2 40 40 H 1.08999 * 109.89008 * 356.14850 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0082 12 7 2.0197 -0.6924 -1.1995 13 6 1.5585 -0.0130 -2.4289 14 6 2.7114 -0.2081 -3.4449 15 6 3.9589 -0.0840 -2.5310 16 8 4.2980 1.2875 -2.3164 17 6 5.1444 -0.8454 -3.1275 18 7 5.6249 -0.1432 -4.3249 19 6 7.0259 -0.4828 -4.6077 20 6 4.7690 -0.4317 -5.4835 21 6 3.4931 -0.7432 -1.2157 22 1 -0.3633 0.4245 -0.9359 23 1 -0.3633 -1.0228 0.1003 24 1 -0.3633 0.5983 0.8356 25 1 0.7082 1.1608 3.4844 26 1 0.6441 -0.4771 -2.7987 27 1 1.3963 1.0479 -2.2381 28 1 2.7020 0.5765 -4.2015 29 1 2.6622 -1.1943 -3.9067 30 1 4.5619 1.7575 -3.1191 31 1 4.8295 -1.8530 -3.3990 32 1 5.9472 -0.9014 -2.3924 33 1 7.3563 0.0510 -5.4988 34 1 7.1130 -1.5565 -4.7738 35 1 7.6478 -0.1944 -3.7603 36 1 4.6957 -1.5104 -5.6212 37 1 3.7748 -0.0188 -5.3125 38 1 5.2015 0.0201 -6.3761 39 1 3.8288 -1.7797 -1.1812 40 1 3.8925 -0.1933 -0.3635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713658645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:04 Heat of formation + Delta-G solvation = -30.102067 kcal Electronic energy + Delta-G solvation = -18811.671953 eV Core-core repulsion = 16047.833893 eV Total energy + Delta-G solvation = -2763.838060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.48081 -36.94807 -35.16715 -33.12086 -30.86363 -29.25162 -28.25193 -27.46361 -25.56745 -24.75651 -21.81953 -21.51319 -19.95846 -19.26502 -16.51371 -16.06153 -15.86969 -15.31826 -15.11505 -14.68649 -14.18029 -13.88688 -13.37761 -12.94684 -12.70753 -12.40603 -12.20041 -12.06258 -11.95669 -11.86413 -11.51440 -11.27226 -10.90969 -10.87003 -10.62526 -10.61382 -10.35447 -10.05918 -9.82440 -9.67169 -9.47738 -8.81292 -8.46448 -8.36706 -7.12176 -5.93316 -3.96941 3.37211 3.41034 3.43942 3.82855 4.47322 4.60401 4.89646 4.97802 5.02150 5.13725 5.25032 5.33724 5.37954 5.40250 5.54803 5.58484 5.71098 5.73495 5.79653 5.85588 6.15770 6.17833 6.43108 6.57509 6.62512 6.74351 6.88746 6.92004 6.93800 7.14717 7.16466 7.61365 7.75595 7.91816 8.18148 8.23930 8.40573 8.65786 9.08760 9.67196 11.14038 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033779 B = 0.006240 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.725359 B = 4486.024526 C = 4971.119066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.208 3.792 3 H 0.003 0.997 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.522 5.522 13 C 0.048 3.952 14 C -0.153 4.153 15 C 0.118 3.882 16 O -0.543 6.543 17 C 0.036 3.964 18 N -0.547 5.547 19 C 0.026 3.974 20 C 0.008 3.992 21 C 0.068 3.932 22 H 0.006 0.994 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.260 0.740 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.372 0.628 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -1.985 -14.624 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.101 3.899 3 H 0.021 0.979 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.247 5.247 13 C -0.080 4.080 14 C -0.191 4.191 15 C 0.075 3.925 16 O -0.348 6.348 17 C -0.093 4.093 18 N -0.271 5.271 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.061 4.061 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.154 -2.021 -13.725 15.609 hybrid contribution 0.795 -0.412 0.047 0.897 sum 7.949 -2.434 -13.677 16.006 Atomic orbital electron populations 1.21785 0.97800 1.00215 0.98880 1.19444 0.92240 0.92201 0.85964 0.97897 1.21082 1.31012 1.12152 0.89876 0.92212 1.24921 0.95267 0.95068 0.98942 1.69898 1.36953 1.23019 1.23389 0.86602 0.79083 0.79711 0.82224 1.20372 1.21397 1.20301 1.63776 1.06560 1.51673 1.02707 1.22907 0.96824 0.97446 0.90849 1.23530 0.96495 1.01304 0.97808 1.22516 0.91154 0.82663 0.96152 1.86589 1.89158 1.22049 1.36999 1.22809 0.98749 0.95625 0.92090 1.61833 1.02678 1.58382 1.04244 1.22388 0.89234 0.98575 1.02027 1.22796 0.99117 0.99192 0.92887 1.22619 0.89875 0.98845 0.94752 0.97460 0.94745 0.90100 0.93018 0.91626 0.94028 0.91098 0.90942 0.78074 0.93427 0.90271 0.91553 0.95806 0.91248 0.95589 0.89892 0.91833 0.91095 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.90 37.16 0.33 -2.94 16 2 C 0.21 5.48 1.68 -68.86 -0.12 5.37 16 3 H 0.00 0.10 8.07 -51.93 -0.42 -0.32 16 4 C -0.50 -14.19 7.63 -34.44 -0.26 -14.46 16 5 H 0.06 1.68 7.37 -52.49 -0.39 1.29 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -26.22 11.38 55.43 0.63 -25.59 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.52 -11.71 5.02 -224.67 -1.13 -12.84 16 13 C 0.05 0.91 5.34 -2.30 -0.01 0.90 16 14 C -0.15 -2.31 4.34 -24.60 -0.11 -2.42 16 15 C 0.12 1.93 1.03 -88.80 -0.09 1.84 16 16 O -0.54 -9.65 13.08 -35.23 -0.46 -10.11 16 17 C 0.04 0.48 4.34 -3.83 -0.02 0.46 16 18 N -0.55 -6.26 4.18 -251.26 -1.05 -7.31 16 19 C 0.03 0.25 9.48 60.07 0.57 0.82 16 20 C 0.01 0.08 8.97 60.07 0.54 0.62 16 21 C 0.07 1.39 5.37 -2.84 -0.02 1.37 16 22 H 0.01 0.15 6.92 -51.93 -0.36 -0.21 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 2.23 6.24 -51.93 -0.32 1.90 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 27 H 0.04 0.85 7.67 -51.93 -0.40 0.46 16 28 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 29 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 30 H 0.37 5.37 8.39 45.56 0.38 5.75 16 31 H 0.05 0.62 7.70 -51.93 -0.40 0.22 16 32 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 33 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.03 0.25 7.94 -51.93 -0.41 -0.16 16 37 H 0.08 0.85 4.53 -51.93 -0.24 0.62 16 38 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 39 H 0.07 1.36 7.82 -51.93 -0.41 0.95 16 40 H 0.08 1.84 6.91 -51.93 -0.36 1.48 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -30.28 305.40 -7.82 -38.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.12 Total: 3.18 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.72 Total: -6.86 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -1.55 Total: -45.74 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.46 Total: -10.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.28 -7.82 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713658645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.003 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds