Wall clock time and date at job start Mon Mar 30 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50703 * 109.47096 * 120.00114 * 2 1 3 5 5 H 1.07990 * 120.00066 * 119.99987 * 4 2 1 6 6 C 1.37875 * 119.99464 * 299.99859 * 4 2 1 7 7 N 1.31515 * 120.00657 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99412 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47245 * 60.00046 * 8 6 4 10 10 H 1.48500 * 109.47097 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47186 * 299.99774 * 8 6 4 12 12 N 1.46900 * 109.47190 * 240.00214 * 2 1 3 13 13 C 1.47847 * 111.00033 * 60.64971 * 12 2 1 14 14 C 1.54898 * 104.79489 * 146.36460 * 13 12 2 15 15 C 1.55140 * 101.65597 * 322.92918 * 14 13 12 16 16 O 1.42902 * 110.85735 * 277.20100 * 15 14 13 17 17 C 1.52998 * 110.70846 * 154.03494 * 15 14 13 18 18 N 1.46894 * 109.47287 * 70.33468 * 17 15 14 19 19 C 1.46904 * 111.00240 * 156.89386 * 18 17 15 20 20 C 1.46905 * 111.00381 * 280.85256 * 18 17 15 21 21 C 1.47435 * 110.99847 * 181.49365 * 12 2 1 22 22 H 1.08996 * 109.47025 * 65.60107 * 1 2 3 23 23 H 1.09001 * 109.47077 * 185.60355 * 1 2 3 24 24 H 1.09005 * 109.46872 * 305.60333 * 1 2 3 25 25 H 0.96994 * 119.99832 * 179.97438 * 7 6 4 26 26 H 1.09005 * 110.37589 * 265.19440 * 13 12 2 27 27 H 1.09006 * 110.37364 * 27.53481 * 13 12 2 28 28 H 1.09004 * 110.99224 * 204.83792 * 14 13 12 29 29 H 1.09004 * 110.99199 * 81.02228 * 14 13 12 30 30 H 0.96693 * 113.99791 * 296.08647 * 16 15 14 31 31 H 1.09004 * 109.47041 * 310.33579 * 17 15 14 32 32 H 1.08996 * 109.47418 * 190.33895 * 17 15 14 33 33 H 1.08998 * 109.47049 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.46893 * 60.00326 * 19 18 17 35 35 H 1.08998 * 109.46808 * 300.00085 * 19 18 17 36 36 H 1.08997 * 109.46274 * 305.53336 * 20 18 17 37 37 H 1.09002 * 109.46614 * 65.52988 * 20 18 17 38 38 H 1.08995 * 109.46830 * 185.53140 * 20 18 17 39 39 H 1.09003 * 109.88678 * 117.33697 * 21 12 2 40 40 H 1.08999 * 109.89008 * 356.14850 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8269 -0.4199 5.2204 11 1 1.8280 -2.5198 4.0082 12 7 2.0197 -0.6924 -1.1995 13 6 1.5585 -0.0130 -2.4289 14 6 2.7114 -0.2081 -3.4449 15 6 3.9589 -0.0840 -2.5310 16 8 4.2980 1.2875 -2.3164 17 6 5.1444 -0.8454 -3.1275 18 7 5.6249 -0.1432 -4.3249 19 6 7.0259 -0.4828 -4.6077 20 6 4.7690 -0.4317 -5.4835 21 6 3.4931 -0.7432 -1.2157 22 1 -0.3633 0.4245 -0.9359 23 1 -0.3633 -1.0228 0.1003 24 1 -0.3633 0.5983 0.8356 25 1 0.7082 1.1608 3.4844 26 1 0.6441 -0.4771 -2.7987 27 1 1.3963 1.0479 -2.2381 28 1 2.7020 0.5765 -4.2015 29 1 2.6622 -1.1943 -3.9067 30 1 4.5619 1.7575 -3.1191 31 1 4.8295 -1.8530 -3.3990 32 1 5.9472 -0.9014 -2.3924 33 1 7.3563 0.0510 -5.4988 34 1 7.1130 -1.5565 -4.7738 35 1 7.6478 -0.1944 -3.7603 36 1 4.6957 -1.5104 -5.6212 37 1 3.7748 -0.0188 -5.3125 38 1 5.2015 0.0201 -6.3761 39 1 3.8288 -1.7797 -1.1812 40 1 3.8925 -0.1933 -0.3635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713658645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:03 Heat of formation + Delta-G solvation = -54.425007 kcal Electronic energy + Delta-G solvation = -18812.726675 eV Core-core repulsion = 16047.833893 eV Total energy + Delta-G solvation = -2764.892782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85558 -38.22627 -36.58049 -35.04814 -32.64956 -30.62598 -29.82090 -28.40553 -27.27310 -26.44323 -23.37386 -22.65857 -21.41151 -21.05744 -18.23362 -17.80143 -17.24317 -16.57629 -16.48855 -16.04153 -15.57189 -15.12068 -15.09487 -14.47733 -14.03698 -13.82682 -13.73612 -13.49065 -13.24186 -12.91500 -12.84993 -12.71783 -12.60351 -12.58560 -12.31173 -12.19216 -12.15513 -11.98797 -11.53263 -11.31753 -10.92796 -10.76323 -10.53834 -9.33236 -8.96979 -8.11186 -6.22918 1.40883 1.43576 1.51059 2.42268 2.92458 3.16917 3.27198 3.43003 3.68859 3.87347 4.07908 4.26463 4.33477 4.42157 4.51051 4.61529 4.67380 4.76958 4.79235 4.82070 4.88052 4.90174 4.98831 5.03340 5.06789 5.10707 5.12022 5.16228 5.27750 5.47992 5.72810 5.76244 5.98836 6.10307 6.22837 6.36273 6.67696 6.90479 6.99839 7.45644 8.95457 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033779 B = 0.006240 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.725359 B = 4486.024526 C = 4971.119066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.044 1.044 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.529 5.529 13 C 0.041 3.959 14 C -0.134 4.134 15 C 0.123 3.877 16 O -0.567 6.567 17 C 0.047 3.953 18 N -0.555 5.555 19 C 0.026 3.974 20 C 0.007 3.993 21 C 0.064 3.936 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.261 0.739 26 H 0.079 0.921 27 H 0.020 0.980 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.386 0.614 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -3.107 -16.346 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H -0.027 1.027 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.254 5.254 13 C -0.087 4.087 14 C -0.172 4.172 15 C 0.081 3.919 16 O -0.375 6.375 17 C -0.082 4.082 18 N -0.279 5.279 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.065 4.065 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.236 0.764 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.032 -3.148 -15.481 17.723 hybrid contribution 0.544 -0.019 0.533 0.761 sum 8.576 -3.167 -14.949 17.523 Atomic orbital electron populations 1.21590 0.97226 0.99583 0.99002 1.19182 0.92627 0.89783 0.87564 1.02654 1.21354 1.31183 1.12200 0.91093 0.92609 1.25763 0.95385 0.95782 1.02047 1.70037 1.37812 1.24231 1.24092 0.85555 0.78631 0.78779 0.78330 1.19810 1.20787 1.19369 1.63718 1.07924 1.51213 1.02528 1.23031 0.99096 0.95963 0.90609 1.23482 0.93391 1.03407 0.96939 1.22369 0.93149 0.82241 0.94187 1.86554 1.89445 1.23013 1.38517 1.22561 0.97139 0.95537 0.92941 1.61779 1.03834 1.58265 1.04072 1.22428 0.87928 0.99229 1.02589 1.22838 0.98785 0.99657 0.92770 1.22613 0.88780 0.99392 0.95667 0.95218 0.94961 0.92583 0.92949 0.90317 0.96141 0.88521 0.88848 0.76404 0.92525 0.91007 0.89877 0.95198 0.91717 0.95138 0.90180 0.90116 0.89945 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.90 71.98 0.64 -5.39 16 2 C 0.22 11.80 1.68 44.17 0.07 11.87 16 3 H -0.04 -2.76 8.07 -2.39 -0.02 -2.78 16 4 C -0.52 -30.19 7.63 25.60 0.20 -29.99 16 5 H 0.06 3.20 7.37 -2.92 -0.02 3.18 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -55.58 11.38 21.45 0.24 -55.33 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.53 -23.98 5.02 -864.73 -4.34 -28.33 16 13 C 0.04 1.52 5.34 86.77 0.46 1.99 16 14 C -0.13 -3.73 4.34 31.98 0.14 -3.59 16 15 C 0.12 3.89 1.03 -9.61 -0.01 3.88 16 16 O -0.57 -20.04 13.08 -148.98 -1.95 -21.99 16 17 C 0.05 1.17 4.34 86.30 0.37 1.55 16 18 N -0.56 -11.11 4.18 -948.85 -3.96 -15.07 16 19 C 0.03 0.42 9.48 127.69 1.21 1.63 16 20 C 0.01 0.11 8.97 127.69 1.15 1.26 16 21 C 0.06 2.66 5.37 86.65 0.46 3.13 16 22 H 0.03 1.35 6.92 -2.39 -0.02 1.33 16 23 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 24 H 0.06 3.18 6.24 -2.38 -0.01 3.17 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.08 2.71 8.09 -2.38 -0.02 2.69 16 27 H 0.02 0.84 7.67 -2.38 -0.02 0.82 16 28 H 0.10 2.24 6.55 -2.39 -0.02 2.23 16 29 H 0.09 2.26 7.73 -2.38 -0.02 2.24 16 30 H 0.39 10.68 8.39 -74.06 -0.62 10.06 16 31 H 0.06 1.31 7.70 -2.39 -0.02 1.29 16 32 H 0.07 1.88 7.83 -2.39 -0.02 1.87 16 33 H 0.08 1.08 8.06 -2.39 -0.02 1.06 16 34 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 36 H 0.03 0.48 7.94 -2.39 -0.02 0.46 16 37 H 0.08 1.33 4.53 -2.39 -0.01 1.32 16 38 H 0.08 1.04 8.02 -2.39 -0.02 1.02 16 39 H 0.08 3.15 7.82 -2.39 -0.02 3.13 16 40 H 0.03 1.72 6.91 -2.39 -0.02 1.70 16 Total: -1.00 -67.14 305.40 -2.45 -69.58 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.39 Total: 16.52 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 5.15 Total: -12.72 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -8.06 Total: -98.73 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.95 Total: -21.99 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.14 -2.45 -69.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713658645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.160 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds