Wall clock time and date at job start Mon Mar 30 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47172 * 120.00573 * 2 1 3 5 5 H 1.08004 * 119.99819 * 114.50279 * 4 2 1 6 6 C 1.37874 * 120.00033 * 294.49656 * 4 2 1 7 7 N 1.31510 * 119.99960 * 350.82368 * 6 4 2 8 8 Si 1.86795 * 120.00013 * 170.82295 * 6 4 2 9 9 H 1.48500 * 109.47326 * 90.00408 * 8 6 4 10 10 H 1.48494 * 109.47418 * 330.00142 * 8 6 4 11 11 H 1.48500 * 109.47406 * 210.00086 * 8 6 4 12 12 N 1.46904 * 109.46919 * 240.00487 * 2 1 3 13 13 C 1.47448 * 111.00059 * 63.75579 * 12 2 1 14 14 C 1.54319 * 107.23148 * 123.25585 * 13 12 2 15 15 C 1.55133 * 103.02240 * 22.28526 * 14 13 12 16 16 O 1.42899 * 110.99177 * 82.43561 * 15 14 13 17 17 C 1.53004 * 110.99219 * 206.21775 * 15 14 13 18 18 N 1.46901 * 109.46920 * 298.72365 * 17 15 14 19 19 C 1.46901 * 111.00061 * 78.62684 * 18 17 15 20 20 C 1.46896 * 111.00092 * 202.58393 * 18 17 15 21 21 C 1.47849 * 110.99906 * 184.59411 * 12 2 1 22 22 H 1.09006 * 109.47509 * 303.74597 * 1 2 3 23 23 H 1.08994 * 109.47623 * 63.74792 * 1 2 3 24 24 H 1.09000 * 109.47093 * 183.74997 * 1 2 3 25 25 H 0.97005 * 120.00173 * 1.45379 * 7 6 4 26 26 H 1.09000 * 109.88313 * 242.66524 * 13 12 2 27 27 H 1.08998 * 109.88635 * 3.84731 * 13 12 2 28 28 H 1.08999 * 110.69943 * 140.66573 * 14 13 12 29 29 H 1.09001 * 110.70523 * 263.89652 * 14 13 12 30 30 H 0.96698 * 113.99952 * 61.45355 * 16 15 14 31 31 H 1.08994 * 109.47193 * 58.71833 * 17 15 14 32 32 H 1.08997 * 109.47372 * 178.72773 * 17 15 14 33 33 H 1.08996 * 109.47080 * 50.86688 * 19 18 17 34 34 H 1.08997 * 109.47186 * 170.86972 * 19 18 17 35 35 H 1.09007 * 109.47398 * 290.86730 * 19 18 17 36 36 H 1.08997 * 109.47379 * 60.00166 * 20 18 17 37 37 H 1.09003 * 109.46686 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.46664 * 299.99734 * 20 18 17 39 39 H 1.08998 * 110.37365 * 332.46658 * 21 12 2 40 40 H 1.09003 * 110.37263 * 94.80562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.5780 -1.6375 1.1336 6 6 1.7953 -0.1772 2.4795 7 7 1.2937 1.0332 2.5933 8 14 2.1866 -1.1738 4.0102 9 1 3.5841 -0.9033 4.4331 10 1 2.0306 -2.6202 3.7124 11 1 1.2560 -0.7901 5.1020 12 7 2.0195 -0.6924 -1.1995 13 6 1.6218 0.0264 -2.4240 14 6 2.9130 0.3461 -3.2062 15 6 3.9184 -0.7044 -2.6657 16 8 3.7577 -1.9576 -3.3332 17 6 5.3577 -0.2007 -2.7908 18 7 5.6737 0.0321 -4.2064 19 6 5.1038 1.3038 -4.6708 20 6 7.1241 -0.0099 -4.4358 21 6 3.4933 -0.8086 -1.1797 22 1 -0.3634 0.5709 0.8545 23 1 -0.3634 0.4545 -0.9216 24 1 -0.3633 -1.0255 0.0672 25 1 1.0708 1.5426 1.7984 26 1 0.9685 -0.6034 -3.0279 27 1 1.1089 0.9514 -2.1608 28 1 2.7571 0.2151 -4.2770 29 1 3.2564 1.3570 -2.9865 30 1 3.9191 -1.9194 -4.2859 31 1 5.4659 0.7315 -2.2364 32 1 6.0404 -0.9467 -2.3840 33 1 5.3863 2.1011 -3.9835 34 1 5.4847 1.5306 -5.6666 35 1 4.0173 1.2234 -4.7071 36 1 7.5094 -0.9880 -4.1480 37 1 7.3300 0.1650 -5.4918 38 1 7.6088 0.7620 -3.8380 39 1 3.9304 0.0057 -0.6020 40 1 3.7925 -1.7717 -0.7661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713658647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:08 Heat of formation + Delta-G solvation = -31.179050 kcal Electronic energy + Delta-G solvation = -18849.174516 eV Core-core repulsion = 16085.289754 eV Total energy + Delta-G solvation = -2763.884762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57039 -37.04571 -35.39103 -33.38892 -30.79062 -29.33686 -28.36728 -27.48998 -25.50767 -24.64054 -21.94677 -21.63029 -19.95410 -19.48610 -16.95462 -16.49161 -15.89481 -15.22975 -15.03314 -14.61690 -14.10528 -13.71487 -13.56600 -13.23103 -13.02792 -12.62614 -12.12659 -12.03343 -11.96893 -11.82942 -11.66278 -11.29073 -11.01745 -10.92411 -10.70111 -10.65307 -10.27639 -10.16976 -10.06473 -9.90955 -9.60220 -8.51473 -8.48493 -8.29503 -7.19744 -6.33170 -4.02372 3.44793 3.50523 3.66232 3.79626 4.49062 4.55012 4.77040 4.93894 5.00438 5.12927 5.22628 5.26314 5.36028 5.40091 5.41494 5.52824 5.62779 5.70240 5.77698 5.82090 6.06794 6.11015 6.22842 6.45808 6.46797 6.59547 6.67148 6.77865 6.85261 6.88340 6.90704 7.12910 7.46648 7.86333 8.05969 8.14191 8.39344 8.64170 8.90900 9.68079 11.03884 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030959 B = 0.006309 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.217969 B = 4437.249002 C = 4800.670387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.195 3.805 3 H -0.011 1.011 4 C -0.587 4.587 5 H 0.057 0.943 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 1.070 2.930 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.285 1.285 12 N -0.513 5.513 13 C 0.044 3.956 14 C -0.164 4.164 15 C 0.129 3.871 16 O -0.537 6.537 17 C 0.034 3.966 18 N -0.546 5.546 19 C 0.004 3.996 20 C 0.025 3.975 21 C 0.082 3.918 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.047 0.953 25 H 0.269 0.731 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.371 0.629 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 0.325 -13.727 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.088 3.912 3 H 0.006 0.994 4 C -0.625 4.625 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.551 5.551 8 Si 0.898 3.102 9 H -0.217 1.217 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.237 5.237 13 C -0.084 4.084 14 C -0.203 4.203 15 C 0.087 3.913 16 O -0.341 6.341 17 C -0.094 4.094 18 N -0.270 5.270 19 C -0.144 4.144 20 C -0.123 4.123 21 C -0.046 4.046 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.336 -0.695 -11.708 13.834 hybrid contribution 0.891 1.779 -1.784 2.672 sum 8.227 1.084 -13.492 15.839 Atomic orbital electron populations 1.21873 0.98261 1.00672 0.98381 1.19568 0.91889 0.91770 0.87982 0.99377 1.21936 1.39007 1.10343 0.91219 0.92510 1.25763 0.94748 0.96627 1.01290 1.70787 1.41472 1.09436 1.33357 0.83539 0.76361 0.75081 0.75194 1.21671 1.21303 1.21049 1.63577 1.08980 1.49332 1.01830 1.22782 0.96007 0.96896 0.92730 1.23655 0.97462 0.99024 1.00134 1.22307 0.90914 0.83812 0.94262 1.86558 1.92744 1.30337 1.24497 1.22784 0.98140 1.00711 0.87805 1.61881 1.12408 1.33674 1.18995 1.22916 1.02412 0.89433 0.99655 1.22401 0.87487 1.01283 1.01154 1.22692 0.89328 1.02103 0.90495 0.92620 0.96393 0.93420 0.92016 0.91716 0.93558 0.90662 0.91451 0.78218 0.93488 0.90034 0.95537 0.91885 0.89540 0.91252 0.91519 0.95768 0.92617 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.86 37.15 0.33 -2.93 16 2 C 0.19 4.99 1.24 -68.87 -0.09 4.91 16 3 H -0.01 -0.31 7.46 -51.93 -0.39 -0.69 16 4 C -0.59 -16.52 7.81 -34.44 -0.27 -16.79 16 5 H 0.06 1.63 7.20 -52.48 -0.38 1.26 16 6 C 0.02 0.56 5.23 -17.82 -0.09 0.47 16 7 N -0.91 -27.32 13.08 55.43 0.73 -26.60 16 8 Si 1.07 25.45 29.91 -169.99 -5.08 20.36 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.51 -11.57 5.02 -224.68 -1.13 -12.70 16 13 C 0.04 0.83 6.11 -2.83 -0.02 0.81 16 14 C -0.16 -2.51 4.11 -24.91 -0.10 -2.61 16 15 C 0.13 2.10 1.05 -88.48 -0.09 2.00 16 16 O -0.54 -8.90 13.18 -35.23 -0.46 -9.36 16 17 C 0.03 0.47 4.51 -3.82 -0.02 0.45 16 18 N -0.55 -6.30 4.57 -251.26 -1.15 -7.44 16 19 C 0.00 0.04 8.64 60.07 0.52 0.56 16 20 C 0.03 0.24 9.47 60.06 0.57 0.81 16 21 C 0.08 1.70 4.80 -2.30 -0.01 1.69 16 22 H 0.05 1.43 6.47 -51.93 -0.34 1.10 16 23 H 0.02 0.38 6.64 -51.93 -0.35 0.03 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.27 8.01 5.99 -40.82 -0.24 7.77 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.88 6.62 -51.93 -0.34 0.54 16 28 H 0.07 0.99 6.85 -51.93 -0.36 0.64 16 29 H 0.07 1.00 7.05 -51.93 -0.37 0.63 16 30 H 0.37 4.91 8.77 45.56 0.40 5.31 16 31 H 0.05 0.67 7.73 -51.93 -0.40 0.27 16 32 H 0.08 1.12 7.84 -51.93 -0.41 0.71 16 33 H 0.03 0.29 7.86 -51.93 -0.41 -0.12 16 34 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 35 H 0.09 0.93 4.25 -51.93 -0.22 0.71 16 36 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 1.21 7.59 -51.93 -0.39 0.82 16 40 H 0.08 1.75 7.86 -51.93 -0.41 1.35 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -30.75 303.54 -7.71 -38.45 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.91 Total: 3.34 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 0.73 Total: -10.63 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -1.55 Total: -46.74 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.46 Total: -9.36 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.75 -7.71 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713658647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.274 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds