Wall clock time and date at job start Mon Mar 30 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.47447 * 2 1 4 4 C 1.50699 * 109.47172 * 120.00573 * 2 1 3 5 5 H 1.08004 * 119.99819 * 114.50279 * 4 2 1 6 6 C 1.37874 * 120.00033 * 294.49656 * 4 2 1 7 7 N 1.31510 * 119.99960 * 350.82368 * 6 4 2 8 8 Si 1.86795 * 120.00013 * 170.82295 * 6 4 2 9 9 H 1.48500 * 109.47326 * 90.00408 * 8 6 4 10 10 H 1.48494 * 109.47418 * 330.00142 * 8 6 4 11 11 H 1.48500 * 109.47406 * 210.00086 * 8 6 4 12 12 N 1.46904 * 109.46919 * 240.00487 * 2 1 3 13 13 C 1.47448 * 111.00059 * 63.75579 * 12 2 1 14 14 C 1.54319 * 107.23148 * 123.25585 * 13 12 2 15 15 C 1.55133 * 103.02240 * 22.28526 * 14 13 12 16 16 O 1.42899 * 110.99177 * 82.43561 * 15 14 13 17 17 C 1.53004 * 110.99219 * 206.21775 * 15 14 13 18 18 N 1.46901 * 109.46920 * 298.72365 * 17 15 14 19 19 C 1.46901 * 111.00061 * 78.62684 * 18 17 15 20 20 C 1.46896 * 111.00092 * 202.58393 * 18 17 15 21 21 C 1.47849 * 110.99906 * 184.59411 * 12 2 1 22 22 H 1.09006 * 109.47509 * 303.74597 * 1 2 3 23 23 H 1.08994 * 109.47623 * 63.74792 * 1 2 3 24 24 H 1.09000 * 109.47093 * 183.74997 * 1 2 3 25 25 H 0.97005 * 120.00173 * 1.45379 * 7 6 4 26 26 H 1.09000 * 109.88313 * 242.66524 * 13 12 2 27 27 H 1.08998 * 109.88635 * 3.84731 * 13 12 2 28 28 H 1.08999 * 110.69943 * 140.66573 * 14 13 12 29 29 H 1.09001 * 110.70523 * 263.89652 * 14 13 12 30 30 H 0.96698 * 113.99952 * 61.45355 * 16 15 14 31 31 H 1.08994 * 109.47193 * 58.71833 * 17 15 14 32 32 H 1.08997 * 109.47372 * 178.72773 * 17 15 14 33 33 H 1.08996 * 109.47080 * 50.86688 * 19 18 17 34 34 H 1.08997 * 109.47186 * 170.86972 * 19 18 17 35 35 H 1.09007 * 109.47398 * 290.86730 * 19 18 17 36 36 H 1.08997 * 109.47379 * 60.00166 * 20 18 17 37 37 H 1.09003 * 109.46686 * 179.97438 * 20 18 17 38 38 H 1.08999 * 109.46664 * 299.99734 * 20 18 17 39 39 H 1.08998 * 110.37365 * 332.46658 * 21 12 2 40 40 H 1.09003 * 110.37263 * 94.80562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.5780 -1.6375 1.1336 6 6 1.7953 -0.1772 2.4795 7 7 1.2937 1.0332 2.5933 8 14 2.1866 -1.1738 4.0102 9 1 3.5841 -0.9033 4.4331 10 1 2.0306 -2.6202 3.7124 11 1 1.2560 -0.7901 5.1020 12 7 2.0195 -0.6924 -1.1995 13 6 1.6218 0.0264 -2.4240 14 6 2.9130 0.3461 -3.2062 15 6 3.9184 -0.7044 -2.6657 16 8 3.7577 -1.9576 -3.3332 17 6 5.3577 -0.2007 -2.7908 18 7 5.6737 0.0321 -4.2064 19 6 5.1038 1.3038 -4.6708 20 6 7.1241 -0.0099 -4.4358 21 6 3.4933 -0.8086 -1.1797 22 1 -0.3634 0.5709 0.8545 23 1 -0.3634 0.4545 -0.9216 24 1 -0.3633 -1.0255 0.0672 25 1 1.0708 1.5426 1.7984 26 1 0.9685 -0.6034 -3.0279 27 1 1.1089 0.9514 -2.1608 28 1 2.7571 0.2151 -4.2770 29 1 3.2564 1.3570 -2.9865 30 1 3.9191 -1.9194 -4.2859 31 1 5.4659 0.7315 -2.2364 32 1 6.0404 -0.9467 -2.3840 33 1 5.3863 2.1011 -3.9835 34 1 5.4847 1.5306 -5.6666 35 1 4.0173 1.2234 -4.7071 36 1 7.5094 -0.9880 -4.1480 37 1 7.3300 0.1650 -5.4918 38 1 7.6088 0.7620 -3.8380 39 1 3.9304 0.0057 -0.6020 40 1 3.7925 -1.7717 -0.7661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713658647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:08 Heat of formation + Delta-G solvation = -56.005208 kcal Electronic energy + Delta-G solvation = -18850.251059 eV Core-core repulsion = 16085.289754 eV Total energy + Delta-G solvation = -2764.961305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95786 -38.38012 -36.76223 -35.26257 -32.51992 -30.72076 -29.93885 -28.47416 -26.97709 -26.58400 -23.57266 -22.76515 -21.49150 -21.13862 -18.90958 -17.91934 -17.22765 -16.35904 -16.18502 -16.09285 -15.64321 -15.31639 -15.09760 -14.89314 -14.37551 -13.78137 -13.63552 -13.44590 -13.25771 -13.22124 -12.96024 -12.87073 -12.63064 -12.50922 -12.38350 -12.24368 -12.14557 -11.94727 -11.71607 -11.33665 -10.86250 -10.63714 -10.44418 -9.41059 -9.02507 -8.61026 -6.31280 1.51883 1.60810 1.79594 2.55205 2.82179 3.13720 3.18267 3.34208 3.62977 3.81649 3.89011 4.17275 4.24158 4.28283 4.44337 4.50451 4.56197 4.62778 4.66380 4.72390 4.74549 4.75576 4.79097 4.82177 4.93110 4.99861 5.02260 5.05817 5.11889 5.21284 5.47056 5.90001 5.90404 6.02665 6.04662 6.38585 6.49083 6.73418 6.98680 7.46854 8.75867 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030959 B = 0.006309 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.217969 B = 4437.249002 C = 4800.670387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.199 3.801 3 H -0.039 1.039 4 C -0.597 4.597 5 H 0.044 0.956 6 C -0.026 4.026 7 N -0.934 5.934 8 Si 1.114 2.886 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.281 1.281 12 N -0.529 5.529 13 C 0.038 3.962 14 C -0.149 4.149 15 C 0.142 3.858 16 O -0.551 6.551 17 C 0.044 3.956 18 N -0.546 5.546 19 C 0.002 3.998 20 C 0.024 3.976 21 C 0.079 3.921 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.388 0.612 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.020 0.980 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.036 0.964 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 0.045 -15.424 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H -0.022 1.022 4 C -0.635 4.635 5 H 0.062 0.938 6 C -0.224 4.224 7 N -0.571 5.571 8 Si 0.936 3.064 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.207 1.207 12 N -0.253 5.253 13 C -0.090 4.090 14 C -0.187 4.187 15 C 0.100 3.900 16 O -0.359 6.359 17 C -0.085 4.085 18 N -0.270 5.270 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.049 4.049 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.238 0.762 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.039 0.961 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.172 -0.973 -13.453 15.771 hybrid contribution 0.645 1.845 -1.342 2.371 sum 8.817 0.872 -14.795 17.245 Atomic orbital electron populations 1.21701 0.97370 1.00024 0.98881 1.19393 0.92509 0.90160 0.88816 1.02151 1.22180 1.38781 1.09876 0.92672 0.93782 1.27113 0.94086 0.96782 1.04467 1.70899 1.43091 1.10326 1.32804 0.82966 0.77001 0.74311 0.72100 1.20024 1.20077 1.20674 1.63473 1.10141 1.49627 1.02056 1.22882 0.97981 0.96466 0.91621 1.23606 0.94929 0.98873 1.01339 1.22014 0.92659 0.84142 0.91183 1.86509 1.92956 1.30368 1.26017 1.22562 0.96292 1.00144 0.89549 1.61866 1.13825 1.34411 1.16867 1.22960 1.02337 0.88651 1.00608 1.22474 0.86070 1.01451 1.02399 1.22595 0.88458 1.00014 0.93857 0.94564 0.93729 0.94108 0.93203 0.90814 0.94076 0.87508 0.90895 0.76217 0.94280 0.90251 0.96094 0.89763 0.89702 0.91099 0.89572 0.95783 0.94579 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.86 71.98 0.64 -5.36 16 2 C 0.20 10.45 1.24 44.16 0.05 10.50 16 3 H -0.04 -2.22 7.46 -2.39 -0.02 -2.24 16 4 C -0.60 -34.45 7.81 25.60 0.20 -34.25 16 5 H 0.04 2.60 7.20 -2.91 -0.02 2.58 16 6 C -0.03 -1.50 5.23 84.65 0.44 -1.06 16 7 N -0.93 -56.94 13.08 21.45 0.28 -56.66 16 8 Si 1.11 51.42 29.91 68.60 2.05 53.47 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 N -0.53 -24.07 5.02 -864.74 -4.34 -28.41 16 13 C 0.04 1.40 6.11 86.65 0.53 1.93 16 14 C -0.15 -4.25 4.11 31.77 0.13 -4.12 16 15 C 0.14 4.45 1.05 -9.41 -0.01 4.44 16 16 O -0.55 -17.23 13.18 -148.98 -1.96 -19.19 16 17 C 0.04 1.14 4.51 86.30 0.39 1.53 16 18 N -0.55 -11.09 4.57 -948.86 -4.34 -15.43 16 19 C 0.00 0.04 8.64 127.69 1.10 1.14 16 20 C 0.02 0.39 9.47 127.69 1.21 1.60 16 21 C 0.08 3.34 4.80 86.77 0.42 3.76 16 22 H 0.04 1.89 6.47 -2.38 -0.02 1.88 16 23 H 0.04 1.91 6.64 -2.39 -0.02 1.89 16 24 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.26 15.88 5.99 -92.70 -0.56 15.32 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 28 H 0.11 2.41 6.85 -2.39 -0.02 2.40 16 29 H 0.07 2.02 7.05 -2.39 -0.02 2.01 16 30 H 0.39 9.11 8.77 -74.06 -0.65 8.46 16 31 H 0.04 1.08 7.73 -2.39 -0.02 1.07 16 32 H 0.08 2.10 7.84 -2.39 -0.02 2.08 16 33 H 0.02 0.40 7.86 -2.39 -0.02 0.38 16 34 H 0.08 1.17 7.95 -2.39 -0.02 1.15 16 35 H 0.08 1.53 4.25 -2.38 -0.01 1.52 16 36 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 37 H 0.09 1.10 8.03 -2.39 -0.02 1.08 16 38 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.04 1.64 7.59 -2.39 -0.02 1.62 16 40 H 0.06 2.59 7.86 -2.39 -0.02 2.57 16 Total: -1.00 -66.83 303.54 -2.63 -69.46 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.58 Total: 16.65 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 5.10 Total: -19.90 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -8.40 Total: -100.50 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.96 Total: -19.19 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -66.83 -2.63 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713658647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.454 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds