Wall clock time and date at job start Mon Mar 30 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46691 * 2 1 4 4 C 1.50699 * 109.47134 * 119.99838 * 2 1 3 5 5 H 1.08003 * 120.00023 * 114.59460 * 4 2 1 6 6 C 1.37876 * 119.99921 * 294.59646 * 4 2 1 7 7 N 1.31517 * 120.00066 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47156 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47038 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47541 * 240.00242 * 8 6 4 12 12 N 1.46901 * 109.47001 * 239.99847 * 2 1 3 13 13 C 1.46847 * 110.99624 * 170.71508 * 12 2 1 14 14 C 1.53044 * 109.51996 * 185.83978 * 13 12 2 15 15 C 1.53113 * 109.27772 * 300.81937 * 14 13 12 16 16 O 1.42897 * 109.52607 * 297.68839 * 15 14 13 17 17 C 1.53001 * 109.52093 * 177.55912 * 15 14 13 18 18 C 1.52998 * 109.47135 * 185.12696 * 17 15 14 19 19 N 1.46899 * 109.47228 * 180.02562 * 18 17 15 20 20 C 1.53115 * 109.21268 * 57.62508 * 15 14 13 21 21 C 1.46842 * 111.00232 * 294.92521 * 12 2 1 22 22 H 1.08996 * 109.47167 * 299.99982 * 1 2 3 23 23 H 1.08999 * 109.47185 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.46778 * 179.97438 * 1 2 3 25 25 H 0.96994 * 119.99879 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46231 * 65.82543 * 13 12 2 27 27 H 1.09003 * 109.45661 * 305.84660 * 13 12 2 28 28 H 1.08996 * 109.49946 * 180.88040 * 14 13 12 29 29 H 1.08998 * 109.50367 * 60.76282 * 14 13 12 30 30 H 0.96696 * 114.00502 * 179.87533 * 16 15 14 31 31 H 1.08997 * 109.47034 * 65.12702 * 17 15 14 32 32 H 1.08995 * 109.47635 * 305.12701 * 17 15 14 33 33 H 1.08997 * 109.47154 * 60.00081 * 18 17 15 34 34 H 1.08999 * 109.47443 * 300.00026 * 18 17 15 35 35 H 1.00899 * 110.99980 * 180.02562 * 19 18 17 36 36 H 1.00897 * 111.00095 * 303.95610 * 19 18 17 37 37 H 1.09003 * 109.50296 * 62.31748 * 20 15 14 38 38 H 1.09004 * 109.50579 * 182.43019 * 20 15 14 39 39 H 1.08999 * 109.46534 * 294.17826 * 21 12 2 40 40 H 1.09001 * 109.46116 * 54.15738 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5794 -1.6366 1.1338 6 6 1.7936 -0.1779 2.4796 7 7 1.1271 0.9497 2.5974 8 14 2.4157 -1.0588 4.0049 9 1 3.1302 -2.2974 3.6044 10 1 3.3457 -0.1690 4.7457 11 1 1.2663 -1.4099 4.8772 12 7 2.0197 -0.6925 -1.1994 13 6 3.4707 -0.5235 -1.3491 14 6 3.9218 -1.1312 -2.6793 15 6 3.5570 -2.6180 -2.7055 16 8 4.2533 -3.2991 -1.6600 17 6 3.9506 -3.2173 -4.0571 18 6 3.4711 -4.6683 -4.1306 19 7 3.8496 -5.2440 -5.4280 20 6 2.0475 -2.7700 -2.4985 21 6 1.6505 -2.1135 -1.1743 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9594 1.3245 3.4762 26 1 3.9816 -1.0267 -0.5282 27 1 3.7161 0.5384 -1.3332 28 1 5.0011 -1.0195 -2.7830 29 1 3.4218 -0.6192 -3.5015 30 1 4.0675 -4.2470 -1.6162 31 1 5.0347 -3.1869 -4.1660 32 1 3.4886 -2.6410 -4.8586 33 1 2.3870 -4.6987 -4.0216 34 1 3.9331 -5.2448 -3.3291 35 1 3.5435 -6.2026 -5.5014 36 1 3.4871 -4.6897 -6.1891 37 1 1.5171 -2.2846 -3.3177 38 1 1.7884 -3.8285 -2.4731 39 1 2.1698 -2.6093 -0.3542 40 1 0.5739 -2.2065 -1.0314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717937642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:12 Heat of formation + Delta-G solvation = -57.844033 kcal Electronic energy + Delta-G solvation = -18873.119468 eV Core-core repulsion = 16108.078426 eV Total energy + Delta-G solvation = -2765.041042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48666 -36.56638 -34.71953 -33.19872 -31.55015 -30.35076 -29.36531 -27.05188 -25.04555 -23.49783 -22.66308 -20.89290 -19.82532 -19.10373 -16.64933 -16.35702 -15.64922 -15.39410 -14.79062 -14.68455 -14.08671 -13.80625 -13.70072 -13.44263 -12.90627 -12.69747 -12.10808 -11.71760 -11.57622 -11.36311 -11.23057 -11.14482 -10.94752 -10.81864 -10.56680 -10.51326 -10.17221 -9.98650 -9.84140 -9.57256 -9.19046 -9.08632 -8.86927 -8.35212 -7.03007 -5.94711 -4.05376 3.29509 3.37918 3.42782 4.29883 4.45279 4.49730 4.82540 4.97360 5.13069 5.18314 5.31583 5.32315 5.46401 5.51431 5.82255 5.91225 6.04378 6.05671 6.13184 6.24671 6.37875 6.40411 6.54236 6.70491 6.88163 6.89381 6.96880 7.05696 7.09234 7.17923 7.25202 7.60997 7.75845 7.94782 8.00722 8.22389 8.39579 8.52656 9.06036 9.62049 11.07133 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034443 B = 0.006277 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.737198 B = 4459.669058 C = 4746.537070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 H 0.040 0.960 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.538 5.538 13 C 0.067 3.933 14 C -0.099 4.099 15 C 0.137 3.863 16 O -0.550 6.550 17 C -0.142 4.142 18 C 0.055 3.945 19 N -0.852 5.852 20 C -0.142 4.142 21 C 0.065 3.935 22 H 0.073 0.927 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.365 0.635 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.339 0.661 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -8.871 -12.611 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.058 0.942 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.262 5.262 13 C -0.062 4.062 14 C -0.137 4.137 15 C 0.096 3.904 16 O -0.355 6.355 17 C -0.180 4.180 18 C -0.076 4.076 19 N -0.381 5.381 20 C -0.180 4.180 21 C -0.064 4.064 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.212 0.788 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.216 -7.776 -12.529 15.092 hybrid contribution -0.603 -1.513 1.388 2.140 sum 2.613 -9.289 -11.141 14.739 Atomic orbital electron populations 1.21733 0.98101 0.98796 0.99678 1.19264 0.91985 0.94301 0.84569 0.94161 1.21798 1.35320 1.08742 0.91780 0.92246 1.24922 0.94983 0.94803 0.98865 1.69928 1.40465 1.18999 1.23432 0.86638 0.78601 0.79916 0.83461 1.19886 1.21071 1.21109 1.62449 1.11433 1.10730 1.41616 1.21749 0.89977 0.99396 0.95081 1.21597 1.00376 0.92028 0.99698 1.21213 0.91032 0.93092 0.85096 1.86637 1.70299 1.24336 1.54275 1.22268 1.02448 0.94929 0.98370 1.21905 0.97874 0.95894 0.91879 1.58717 1.68431 1.06729 1.04260 1.22373 0.95630 0.99712 1.00328 1.21805 1.00102 0.90042 0.94413 0.90807 0.96590 0.95498 0.93080 0.93594 0.92098 0.91933 0.90817 0.78830 0.90683 0.91392 0.94836 0.91227 0.84874 0.84850 0.91274 0.92461 0.93734 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 8.94 37.16 0.33 -2.71 16 2 C 0.21 5.20 2.22 -68.86 -0.15 5.05 16 3 H 0.04 1.13 8.00 -51.93 -0.42 0.72 16 4 C -0.54 -14.70 7.17 -34.44 -0.25 -14.94 16 5 H 0.06 1.66 5.85 -52.48 -0.31 1.36 16 6 C 0.07 1.84 5.33 -17.82 -0.09 1.75 16 7 N -0.89 -25.58 11.73 55.43 0.65 -24.93 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.54 -11.62 4.61 -228.07 -1.05 -12.67 16 13 C 0.07 1.35 5.05 -3.83 -0.02 1.33 16 14 C -0.10 -1.60 5.11 -26.65 -0.14 -1.73 16 15 C 0.14 1.98 0.74 -90.50 -0.07 1.91 16 16 O -0.55 -8.69 11.84 -35.23 -0.42 -9.11 16 17 C -0.14 -1.66 4.78 -26.73 -0.13 -1.79 16 18 C 0.05 0.55 6.09 -3.83 -0.02 0.53 16 19 N -0.85 -7.62 9.62 -10.37 -0.10 -7.72 16 20 C -0.14 -2.14 4.51 -26.65 -0.12 -2.27 16 21 C 0.06 1.28 4.65 -3.83 -0.02 1.26 16 22 H 0.07 1.96 6.51 -51.93 -0.34 1.62 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.62 6.41 -51.93 -0.33 0.29 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 1.06 6.98 -51.93 -0.36 0.69 16 27 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.37 4.48 7.53 45.56 0.34 4.83 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.33 6.41 -51.93 -0.33 0.00 16 34 H 0.07 0.69 6.89 -51.93 -0.36 0.34 16 35 H 0.34 2.45 9.08 -39.29 -0.36 2.09 16 36 H 0.34 2.66 8.99 -39.29 -0.35 2.31 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 39 H 0.04 0.98 5.95 -51.93 -0.31 0.67 16 40 H 0.07 1.32 6.18 -51.93 -0.32 1.00 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -29.74 299.70 -7.97 -37.70 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.87 Total: 7.21 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.67 Total: -11.61 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.50 Total: -45.32 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.42 Total: -9.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.74 -7.97 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717937642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.140 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds