Wall clock time and date at job start Mon Mar 30 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46691 * 2 1 4 4 C 1.50699 * 109.47134 * 119.99838 * 2 1 3 5 5 H 1.08003 * 120.00023 * 114.59460 * 4 2 1 6 6 C 1.37876 * 119.99921 * 294.59646 * 4 2 1 7 7 N 1.31517 * 120.00066 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47156 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47038 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47541 * 240.00242 * 8 6 4 12 12 N 1.46901 * 109.47001 * 239.99847 * 2 1 3 13 13 C 1.46847 * 110.99624 * 170.71508 * 12 2 1 14 14 C 1.53044 * 109.51996 * 185.83978 * 13 12 2 15 15 C 1.53113 * 109.27772 * 300.81937 * 14 13 12 16 16 O 1.42897 * 109.52607 * 297.68839 * 15 14 13 17 17 C 1.53001 * 109.52093 * 177.55912 * 15 14 13 18 18 C 1.52998 * 109.47135 * 185.12696 * 17 15 14 19 19 N 1.46899 * 109.47228 * 180.02562 * 18 17 15 20 20 C 1.53115 * 109.21268 * 57.62508 * 15 14 13 21 21 C 1.46842 * 111.00232 * 294.92521 * 12 2 1 22 22 H 1.08996 * 109.47167 * 299.99982 * 1 2 3 23 23 H 1.08999 * 109.47185 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.46778 * 179.97438 * 1 2 3 25 25 H 0.96994 * 119.99879 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46231 * 65.82543 * 13 12 2 27 27 H 1.09003 * 109.45661 * 305.84660 * 13 12 2 28 28 H 1.08996 * 109.49946 * 180.88040 * 14 13 12 29 29 H 1.08998 * 109.50367 * 60.76282 * 14 13 12 30 30 H 0.96696 * 114.00502 * 179.87533 * 16 15 14 31 31 H 1.08997 * 109.47034 * 65.12702 * 17 15 14 32 32 H 1.08995 * 109.47635 * 305.12701 * 17 15 14 33 33 H 1.08997 * 109.47154 * 60.00081 * 18 17 15 34 34 H 1.08999 * 109.47443 * 300.00026 * 18 17 15 35 35 H 1.00899 * 110.99980 * 180.02562 * 19 18 17 36 36 H 1.00897 * 111.00095 * 303.95610 * 19 18 17 37 37 H 1.09003 * 109.50296 * 62.31748 * 20 15 14 38 38 H 1.09004 * 109.50579 * 182.43019 * 20 15 14 39 39 H 1.08999 * 109.46534 * 294.17826 * 21 12 2 40 40 H 1.09001 * 109.46116 * 54.15738 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5794 -1.6366 1.1338 6 6 1.7936 -0.1779 2.4796 7 7 1.1271 0.9497 2.5974 8 14 2.4157 -1.0588 4.0049 9 1 3.1302 -2.2974 3.6044 10 1 3.3457 -0.1690 4.7457 11 1 1.2663 -1.4099 4.8772 12 7 2.0197 -0.6925 -1.1994 13 6 3.4707 -0.5235 -1.3491 14 6 3.9218 -1.1312 -2.6793 15 6 3.5570 -2.6180 -2.7055 16 8 4.2533 -3.2991 -1.6600 17 6 3.9506 -3.2173 -4.0571 18 6 3.4711 -4.6683 -4.1306 19 7 3.8496 -5.2440 -5.4280 20 6 2.0475 -2.7700 -2.4985 21 6 1.6505 -2.1135 -1.1743 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9594 1.3245 3.4762 26 1 3.9816 -1.0267 -0.5282 27 1 3.7161 0.5384 -1.3332 28 1 5.0011 -1.0195 -2.7830 29 1 3.4218 -0.6192 -3.5015 30 1 4.0675 -4.2470 -1.6162 31 1 5.0347 -3.1869 -4.1660 32 1 3.4886 -2.6410 -4.8586 33 1 2.3870 -4.6987 -4.0216 34 1 3.9331 -5.2448 -3.3291 35 1 3.5435 -6.2026 -5.5014 36 1 3.4871 -4.6897 -6.1891 37 1 1.5171 -2.2846 -3.3177 38 1 1.7884 -3.8285 -2.4731 39 1 2.1698 -2.6093 -0.3542 40 1 0.5739 -2.2065 -1.0314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717937642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:11 Heat of formation + Delta-G solvation = -82.091012 kcal Electronic energy + Delta-G solvation = -18874.170896 eV Core-core repulsion = 16108.078426 eV Total energy + Delta-G solvation = -2766.092470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81362 -38.11943 -35.62364 -35.00598 -33.16756 -31.77608 -30.87103 -28.41807 -27.19011 -24.70450 -24.16776 -22.16666 -21.41749 -20.64151 -18.41251 -17.51504 -17.12179 -16.67000 -16.30490 -15.87184 -15.56390 -15.30622 -15.05970 -14.80639 -14.61179 -13.99196 -13.53270 -13.34381 -13.06345 -12.96436 -12.85216 -12.73858 -12.41840 -12.34003 -12.23381 -11.99362 -11.88727 -11.80459 -11.53224 -11.21147 -10.91424 -10.55634 -10.47246 -9.55595 -8.90667 -8.06168 -6.26324 1.33931 1.36691 1.47349 2.39331 3.14868 3.30313 3.51606 3.54314 3.84443 3.93246 4.11670 4.30591 4.39332 4.45552 4.65057 4.66920 4.71424 4.77772 4.84733 4.91952 5.01523 5.06084 5.11389 5.15185 5.23790 5.27660 5.30242 5.35531 5.46648 5.55454 5.70013 5.95176 6.21190 6.24685 6.38405 6.62196 6.69316 6.93313 6.95324 7.44394 8.91878 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034443 B = 0.006277 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.737198 B = 4459.669058 C = 4746.537070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.206 3.794 3 H 0.005 0.995 4 C -0.543 4.543 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.069 3.931 14 C -0.095 4.095 15 C 0.139 3.861 16 O -0.573 6.573 17 C -0.128 4.128 18 C 0.058 3.942 19 N -0.859 5.859 20 C -0.131 4.131 21 C 0.066 3.934 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.380 0.620 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.350 0.650 36 H 0.347 0.653 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -10.538 -14.086 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 H 0.023 0.977 4 C -0.583 4.583 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.555 5.555 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.257 5.257 13 C -0.060 4.060 14 C -0.133 4.133 15 C 0.098 3.902 16 O -0.381 6.381 17 C -0.167 4.167 18 C -0.072 4.072 19 N -0.390 5.390 20 C -0.169 4.169 21 C -0.062 4.062 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.329 -9.468 -14.023 17.244 hybrid contribution -0.618 -0.978 1.835 2.169 sum 2.711 -10.446 -12.188 16.279 Atomic orbital electron populations 1.21541 0.97263 0.99009 0.99199 1.19089 0.92627 0.92693 0.85701 0.97748 1.21946 1.35078 1.08360 0.92882 0.93369 1.25629 0.95292 0.95527 1.01596 1.70035 1.41308 1.20069 1.24114 0.85685 0.78198 0.78701 0.80124 1.19940 1.20716 1.20259 1.62430 1.12145 1.11941 1.39175 1.21737 0.88868 0.98734 0.96652 1.21583 1.01050 0.93397 0.97239 1.21186 0.90430 0.92081 0.86492 1.86608 1.70640 1.25772 1.55073 1.22082 1.02049 0.96086 0.96435 1.21822 0.98135 0.94720 0.92562 1.58673 1.68720 1.07577 1.03999 1.22312 0.96167 1.00886 0.97560 1.21827 0.99294 0.88621 0.96456 0.93316 0.94931 0.94806 0.92929 0.96962 0.93288 0.91015 0.89189 0.77137 0.91399 0.90247 0.94204 0.91215 0.83666 0.84039 0.90121 0.89754 0.96518 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 8.94 71.99 0.64 -4.87 16 2 C 0.21 10.75 2.22 44.17 0.10 10.85 16 3 H 0.00 0.27 8.00 -2.39 -0.02 0.25 16 4 C -0.54 -30.49 7.17 25.60 0.18 -30.31 16 5 H 0.05 2.78 5.85 -2.91 -0.02 2.76 16 6 C 0.02 1.08 5.33 84.65 0.45 1.53 16 7 N -0.92 -53.70 11.73 21.45 0.25 -53.45 16 8 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.53 -23.18 4.61 -875.49 -4.04 -27.21 16 13 C 0.07 2.83 5.05 86.33 0.44 3.27 16 14 C -0.10 -2.93 5.11 30.65 0.16 -2.77 16 15 C 0.14 3.72 0.74 -10.72 -0.01 3.71 16 16 O -0.57 -17.33 11.84 -148.98 -1.76 -19.10 16 17 C -0.13 -2.59 4.78 30.59 0.15 -2.44 16 18 C 0.06 0.97 6.09 86.30 0.53 1.50 16 19 N -0.86 -12.58 9.62 -186.73 -1.80 -14.38 16 20 C -0.13 -3.62 4.51 30.65 0.14 -3.49 16 21 C 0.07 2.57 4.65 86.33 0.40 2.97 16 22 H 0.05 2.63 6.51 -2.39 -0.02 2.61 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.57 6.41 -2.38 -0.02 1.55 16 25 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.01 0.58 6.98 -2.39 -0.02 0.56 16 27 H 0.05 2.07 8.02 -2.39 -0.02 2.05 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.38 8.63 7.53 -74.06 -0.56 8.07 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 0.62 6.41 -2.39 -0.02 0.61 16 34 H 0.07 1.17 6.89 -2.39 -0.02 1.15 16 35 H 0.35 3.96 9.08 -89.69 -0.81 3.14 16 36 H 0.35 4.27 8.99 -89.70 -0.81 3.46 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 1.90 6.51 -2.38 -0.02 1.89 16 39 H 0.02 0.74 5.95 -2.39 -0.01 0.72 16 40 H 0.06 2.31 6.18 -2.39 -0.01 2.30 16 Total: -1.00 -64.77 299.70 -3.27 -68.04 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -1.12 Total: 19.14 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.17 Total: -20.05 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -5.58 Total: -95.04 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.76 Total: -19.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.77 -3.27 -68.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717937642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.051 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds