Wall clock time and date at job start Mon Mar 30 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50705 * 109.46936 * 240.00258 * 2 1 3 5 5 H 1.08000 * 119.99645 * 245.10477 * 4 2 1 6 6 C 1.37877 * 119.99932 * 65.38004 * 4 2 1 7 7 N 1.31511 * 120.00406 * 354.86989 * 6 4 2 8 8 Si 1.86808 * 119.99626 * 174.86828 * 6 4 2 9 9 H 1.48501 * 109.46790 * 95.00396 * 8 6 4 10 10 H 1.48493 * 109.46920 * 214.99869 * 8 6 4 11 11 H 1.48497 * 109.47023 * 334.99978 * 8 6 4 12 12 N 1.46895 * 109.47516 * 120.00116 * 2 1 3 13 13 C 1.46849 * 110.99788 * 59.20806 * 12 2 1 14 14 C 1.53036 * 109.52310 * 174.16362 * 13 12 2 15 15 C 1.53125 * 109.27791 * 59.17680 * 14 13 12 16 16 O 1.42900 * 109.51931 * 62.25339 * 15 14 13 17 17 C 1.53002 * 109.57533 * 182.40779 * 15 14 13 18 18 C 1.53000 * 109.47249 * 304.72034 * 17 15 14 19 19 N 1.46897 * 109.47102 * 179.97438 * 18 17 15 20 20 C 1.53111 * 109.16070 * 302.34696 * 15 14 13 21 21 C 1.46845 * 110.99845 * 294.99848 * 12 2 1 22 22 H 1.08999 * 109.47418 * 54.93657 * 1 2 3 23 23 H 1.08999 * 109.47174 * 174.93878 * 1 2 3 24 24 H 1.09003 * 109.46687 * 294.94258 * 1 2 3 25 25 H 0.96993 * 120.00062 * 179.97438 * 7 6 4 26 26 H 1.09009 * 109.46124 * 294.17590 * 13 12 2 27 27 H 1.08997 * 109.46770 * 54.14681 * 13 12 2 28 28 H 1.08998 * 109.50709 * 299.23745 * 14 13 12 29 29 H 1.08997 * 109.50664 * 179.11840 * 14 13 12 30 30 H 0.96702 * 114.00461 * 60.32133 * 16 15 14 31 31 H 1.09002 * 109.46816 * 64.71790 * 17 15 14 32 32 H 1.08994 * 109.47387 * 184.71743 * 17 15 14 33 33 H 1.09002 * 109.47012 * 299.99636 * 18 17 15 34 34 H 1.08994 * 109.47164 * 59.99572 * 18 17 15 35 35 H 1.00900 * 111.00384 * 56.04194 * 19 18 17 36 36 H 1.00907 * 111.00141 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.50727 * 297.70804 * 20 15 14 38 38 H 1.09006 * 109.53465 * 177.61455 * 20 15 14 39 39 H 1.08999 * 109.46333 * 305.85254 * 21 12 2 40 40 H 1.09004 * 109.46641 * 65.83220 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5835 -1.6341 -1.1336 6 6 1.7931 -0.1781 -2.4797 7 7 1.0415 0.8938 -2.6049 8 14 2.5366 -0.9797 -3.9945 9 1 1.5509 -1.9147 -4.5939 10 1 2.8910 0.0681 -4.9853 11 1 3.7589 -1.7294 -3.6082 12 7 2.0197 -0.6925 1.1993 13 6 1.5335 -2.0774 1.2427 14 6 2.1777 -2.8089 2.4225 15 6 1.8224 -2.0824 3.7228 16 8 0.4066 -2.1117 3.9145 17 6 2.5121 -2.7731 4.9010 18 6 2.1341 -4.2556 4.9155 19 7 2.7968 -4.9189 6.0463 20 6 2.2966 -0.6294 3.6324 21 6 1.6490 0.0389 2.4175 22 1 -0.3634 0.5904 -0.8411 23 1 -0.3633 -1.0236 -0.0907 24 1 -0.3633 0.4334 0.9319 25 1 0.8736 1.2684 -3.4837 26 1 0.4500 -2.0784 1.3627 27 1 1.7964 -2.5840 0.3141 28 1 3.2603 -2.8204 2.2964 29 1 1.8048 -3.8323 2.4638 30 1 0.0369 -3.0028 3.9806 31 1 3.5928 -2.6748 4.7977 32 1 2.1924 -2.3075 5.8331 33 1 1.0534 -4.3540 5.0188 34 1 2.4539 -4.7213 3.9834 35 1 2.5673 -4.4642 6.9174 36 1 2.5625 -5.8998 6.0781 37 1 3.3811 -0.6065 3.5253 38 1 2.0091 -0.0952 4.5380 39 1 1.9957 1.0695 2.3421 40 1 0.5650 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717937644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:16 Heat of formation + Delta-G solvation = -56.189191 kcal Electronic energy + Delta-G solvation = -18780.134277 eV Core-core repulsion = 16015.164994 eV Total energy + Delta-G solvation = -2764.969283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56792 -36.67701 -34.75207 -33.23841 -31.63980 -30.38149 -29.29918 -26.87986 -25.21716 -23.61166 -22.62644 -21.17997 -20.04795 -18.82747 -16.51642 -16.11683 -15.95558 -15.58015 -14.96258 -14.34549 -14.17536 -13.86601 -13.71806 -13.64789 -12.93951 -12.58453 -12.15029 -11.85073 -11.69782 -11.35793 -11.23103 -11.17977 -11.06634 -10.83151 -10.63723 -10.54954 -10.24000 -10.03868 -9.96631 -9.53250 -9.32450 -8.94374 -8.73005 -8.36995 -7.00472 -5.97100 -3.99412 3.32889 3.40061 3.44739 4.27374 4.41161 4.46544 4.77698 4.94121 5.08651 5.14621 5.23652 5.36335 5.44488 5.48422 5.77262 5.93599 6.00042 6.00699 6.11766 6.14369 6.30215 6.32838 6.52275 6.65227 6.73623 6.82525 6.86963 6.91901 6.95675 7.16225 7.22750 7.59044 7.77074 7.83545 7.88139 8.21158 8.46731 8.69404 9.06512 9.65078 11.11032 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037388 B = 0.005817 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.720818 B = 4812.484880 C = 5213.189580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.531 5.531 13 C 0.067 3.933 14 C -0.142 4.142 15 C 0.136 3.864 16 O -0.555 6.555 17 C -0.142 4.142 18 C 0.055 3.945 19 N -0.851 5.851 20 C -0.097 4.097 21 C 0.056 3.944 22 H 0.078 0.922 23 H 0.029 0.971 24 H 0.009 0.991 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.365 0.635 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.338 0.662 36 H 0.340 0.660 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -8.232 14.236 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.255 5.255 13 C -0.062 4.062 14 C -0.180 4.180 15 C 0.095 3.905 16 O -0.361 6.361 17 C -0.180 4.180 18 C -0.075 4.075 19 N -0.380 5.380 20 C -0.135 4.135 21 C -0.073 4.073 22 H 0.097 0.903 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.212 0.788 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.676 -7.249 13.671 15.565 hybrid contribution -1.612 -1.171 -0.474 2.048 sum 0.063 -8.420 13.197 15.654 Atomic orbital electron populations 1.22355 1.00975 0.99825 0.99288 1.19285 0.89639 0.94575 0.86041 0.94235 1.21121 1.34212 1.08511 0.89913 0.92045 1.24929 0.95219 0.95187 0.98924 1.69923 1.37645 1.22316 1.23428 0.86550 0.79554 0.78934 0.82766 1.20996 1.21269 1.19824 1.62291 1.59578 1.01413 1.02248 1.21842 0.96479 0.90767 0.97083 1.22362 1.02311 0.97963 0.95370 1.21257 0.80322 0.96378 0.92591 1.86597 1.21420 1.32445 1.95604 1.22259 1.02225 0.94294 0.99206 1.21922 0.95361 0.95230 0.95008 1.58735 1.65813 1.06946 1.06516 1.21562 1.00702 0.92853 0.98398 1.21914 0.97904 0.97189 0.90276 0.90327 0.95191 0.97192 0.93103 0.95282 0.90177 0.90631 0.92365 0.78831 0.90194 0.91762 0.95812 0.90305 0.84959 0.84817 0.90323 0.92044 0.91898 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.22 37.16 0.31 -3.81 16 2 C 0.21 5.41 2.29 -68.86 -0.16 5.25 16 3 H 0.04 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.50 -13.75 7.91 -34.44 -0.27 -14.02 16 5 H 0.06 1.69 6.56 -52.49 -0.34 1.34 16 6 C 0.06 1.63 5.36 -17.82 -0.10 1.53 16 7 N -0.89 -25.81 11.58 55.43 0.64 -25.17 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.53 -11.60 4.63 -228.08 -1.06 -12.65 16 13 C 0.07 1.32 4.53 -3.83 -0.02 1.30 16 14 C -0.14 -2.17 4.52 -26.65 -0.12 -2.29 16 15 C 0.14 1.89 0.74 -90.50 -0.07 1.83 16 16 O -0.56 -8.04 11.83 -35.23 -0.42 -8.45 16 17 C -0.14 -1.61 4.78 -26.73 -0.13 -1.74 16 18 C 0.06 0.54 6.10 -3.83 -0.02 0.52 16 19 N -0.85 -7.49 9.62 -10.37 -0.10 -7.59 16 20 C -0.10 -1.52 5.11 -26.65 -0.14 -1.65 16 21 C 0.06 1.07 4.90 -3.83 -0.02 1.05 16 22 H 0.08 2.14 6.45 -51.93 -0.33 1.81 16 23 H 0.03 0.73 6.81 -51.93 -0.35 0.37 16 24 H 0.01 0.22 6.42 -51.93 -0.33 -0.12 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.60 6.35 -51.92 -0.33 0.27 16 27 H 0.08 1.73 6.25 -51.93 -0.32 1.40 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.76 6.51 -51.93 -0.34 0.43 16 30 H 0.37 4.04 7.53 45.56 0.34 4.38 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.21 6.88 -51.93 -0.36 -0.15 16 34 H 0.08 0.83 6.41 -51.93 -0.33 0.49 16 35 H 0.34 2.58 8.99 -39.29 -0.35 2.23 16 36 H 0.34 2.40 9.08 -39.29 -0.36 2.05 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 40 H 0.04 0.72 6.24 -51.93 -0.32 0.40 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -29.82 298.64 -8.01 -37.83 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.83 Total: 7.10 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.73 Total: -12.04 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.51 Total: -45.41 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.42 Total: -8.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.82 -8.01 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717937644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.358 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds