Wall clock time and date at job start Mon Mar 30 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50705 * 109.46936 * 240.00258 * 2 1 3 5 5 H 1.08000 * 119.99645 * 245.10477 * 4 2 1 6 6 C 1.37877 * 119.99932 * 65.38004 * 4 2 1 7 7 N 1.31511 * 120.00406 * 354.86989 * 6 4 2 8 8 Si 1.86808 * 119.99626 * 174.86828 * 6 4 2 9 9 H 1.48501 * 109.46790 * 95.00396 * 8 6 4 10 10 H 1.48493 * 109.46920 * 214.99869 * 8 6 4 11 11 H 1.48497 * 109.47023 * 334.99978 * 8 6 4 12 12 N 1.46895 * 109.47516 * 120.00116 * 2 1 3 13 13 C 1.46849 * 110.99788 * 59.20806 * 12 2 1 14 14 C 1.53036 * 109.52310 * 174.16362 * 13 12 2 15 15 C 1.53125 * 109.27791 * 59.17680 * 14 13 12 16 16 O 1.42900 * 109.51931 * 62.25339 * 15 14 13 17 17 C 1.53002 * 109.57533 * 182.40779 * 15 14 13 18 18 C 1.53000 * 109.47249 * 304.72034 * 17 15 14 19 19 N 1.46897 * 109.47102 * 179.97438 * 18 17 15 20 20 C 1.53111 * 109.16070 * 302.34696 * 15 14 13 21 21 C 1.46845 * 110.99845 * 294.99848 * 12 2 1 22 22 H 1.08999 * 109.47418 * 54.93657 * 1 2 3 23 23 H 1.08999 * 109.47174 * 174.93878 * 1 2 3 24 24 H 1.09003 * 109.46687 * 294.94258 * 1 2 3 25 25 H 0.96993 * 120.00062 * 179.97438 * 7 6 4 26 26 H 1.09009 * 109.46124 * 294.17590 * 13 12 2 27 27 H 1.08997 * 109.46770 * 54.14681 * 13 12 2 28 28 H 1.08998 * 109.50709 * 299.23745 * 14 13 12 29 29 H 1.08997 * 109.50664 * 179.11840 * 14 13 12 30 30 H 0.96702 * 114.00461 * 60.32133 * 16 15 14 31 31 H 1.09002 * 109.46816 * 64.71790 * 17 15 14 32 32 H 1.08994 * 109.47387 * 184.71743 * 17 15 14 33 33 H 1.09002 * 109.47012 * 299.99636 * 18 17 15 34 34 H 1.08994 * 109.47164 * 59.99572 * 18 17 15 35 35 H 1.00900 * 111.00384 * 56.04194 * 19 18 17 36 36 H 1.00907 * 111.00141 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.50727 * 297.70804 * 20 15 14 38 38 H 1.09006 * 109.53465 * 177.61455 * 20 15 14 39 39 H 1.08999 * 109.46333 * 305.85254 * 21 12 2 40 40 H 1.09004 * 109.46641 * 65.83220 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5835 -1.6341 -1.1336 6 6 1.7931 -0.1781 -2.4797 7 7 1.0415 0.8938 -2.6049 8 14 2.5366 -0.9797 -3.9945 9 1 1.5509 -1.9147 -4.5939 10 1 2.8910 0.0681 -4.9853 11 1 3.7589 -1.7294 -3.6082 12 7 2.0197 -0.6925 1.1993 13 6 1.5335 -2.0774 1.2427 14 6 2.1777 -2.8089 2.4225 15 6 1.8224 -2.0824 3.7228 16 8 0.4066 -2.1117 3.9145 17 6 2.5121 -2.7731 4.9010 18 6 2.1341 -4.2556 4.9155 19 7 2.7968 -4.9189 6.0463 20 6 2.2966 -0.6294 3.6324 21 6 1.6490 0.0389 2.4175 22 1 -0.3634 0.5904 -0.8411 23 1 -0.3633 -1.0236 -0.0907 24 1 -0.3633 0.4334 0.9319 25 1 0.8736 1.2684 -3.4837 26 1 0.4500 -2.0784 1.3627 27 1 1.7964 -2.5840 0.3141 28 1 3.2603 -2.8204 2.2964 29 1 1.8048 -3.8323 2.4638 30 1 0.0369 -3.0028 3.9806 31 1 3.5928 -2.6748 4.7977 32 1 2.1924 -2.3075 5.8331 33 1 1.0534 -4.3540 5.0188 34 1 2.4539 -4.7213 3.9834 35 1 2.5673 -4.4642 6.9174 36 1 2.5625 -5.8998 6.0781 37 1 3.3811 -0.6065 3.5253 38 1 2.0091 -0.0952 4.5380 39 1 1.9957 1.0695 2.3421 40 1 0.5650 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717937644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:15 Heat of formation + Delta-G solvation = -80.461597 kcal Electronic energy + Delta-G solvation = -18781.186808 eV Core-core repulsion = 16015.164994 eV Total energy + Delta-G solvation = -2766.021813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -40.87077 -38.19705 -35.62190 -35.02848 -33.19320 -31.79702 -30.76551 -28.30802 -27.33070 -24.86160 -24.12409 -22.53090 -21.41447 -20.34512 -18.21518 -17.53685 -17.14801 -16.71677 -16.44991 -15.89941 -15.57512 -15.32950 -15.04730 -14.66270 -14.42156 -14.19276 -13.84474 -13.34269 -13.08970 -13.01453 -12.71035 -12.61045 -12.57119 -12.36054 -12.25699 -12.07066 -11.98348 -11.86571 -11.60338 -10.96429 -10.87991 -10.52790 -10.49527 -9.59110 -8.78816 -8.10873 -6.20613 1.41944 1.43629 1.54990 2.43682 3.17749 3.29857 3.50090 3.51586 3.82206 3.90279 4.17122 4.25209 4.35189 4.40031 4.58793 4.62302 4.68914 4.69596 4.76864 4.86739 4.95254 5.01024 5.06449 5.09934 5.14187 5.22560 5.24876 5.33918 5.42731 5.55602 5.72549 5.77496 6.20253 6.24076 6.53865 6.61524 6.79858 6.89653 6.93638 7.48226 8.96789 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037388 B = 0.005817 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.720818 B = 4812.484880 C = 5213.189580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.214 3.786 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.538 5.538 13 C 0.069 3.931 14 C -0.133 4.133 15 C 0.142 3.858 16 O -0.570 6.570 17 C -0.129 4.129 18 C 0.058 3.942 19 N -0.858 5.858 20 C -0.095 4.095 21 C 0.057 3.943 22 H 0.052 0.948 23 H 0.027 0.973 24 H 0.021 0.979 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.381 0.619 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.346 0.654 36 H 0.350 0.650 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -9.961 15.499 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.262 5.262 13 C -0.059 4.059 14 C -0.171 4.171 15 C 0.101 3.899 16 O -0.378 6.378 17 C -0.167 4.167 18 C -0.073 4.073 19 N -0.389 5.389 20 C -0.133 4.133 21 C -0.072 4.072 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.176 -9.005 14.961 17.597 hybrid contribution -1.798 -0.610 -0.828 2.071 sum 0.378 -9.615 14.133 17.098 Atomic orbital electron populations 1.22126 1.00664 0.99132 0.98723 1.19056 0.89731 0.92991 0.87610 0.97775 1.21370 1.34262 1.08549 0.90961 0.92371 1.25733 0.95520 0.95753 1.01894 1.70053 1.38577 1.23534 1.24121 0.85510 0.78874 0.78055 0.78981 1.20269 1.20947 1.19233 1.62217 1.59642 1.02438 1.01889 1.21819 0.96163 0.89667 0.98222 1.22308 1.01764 0.98942 0.94072 1.21128 0.80596 0.95213 0.92956 1.86566 1.21549 1.34108 1.95581 1.22085 1.01476 0.95220 0.97946 1.21836 0.96193 0.93981 0.95256 1.58687 1.65883 1.07749 1.06618 1.21561 1.00724 0.94061 0.96931 1.21948 0.97354 0.97132 0.90730 0.92903 0.95356 0.95966 0.93036 0.96367 0.92486 0.90867 0.89649 0.76998 0.90626 0.91016 0.94526 0.90865 0.84132 0.83640 0.89824 0.90327 0.92761 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 8.22 71.98 0.59 -6.95 16 2 C 0.21 11.29 2.29 44.17 0.10 11.39 16 3 H 0.00 0.25 8.08 -2.39 -0.02 0.24 16 4 C -0.51 -28.82 7.91 25.60 0.20 -28.62 16 5 H 0.06 3.24 6.56 -2.91 -0.02 3.22 16 6 C 0.01 0.53 5.36 84.66 0.45 0.98 16 7 N -0.92 -54.42 11.58 21.45 0.25 -54.17 16 8 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.54 -23.77 4.63 -875.50 -4.06 -27.83 16 13 C 0.07 2.73 4.53 86.33 0.39 3.12 16 14 C -0.13 -3.82 4.52 30.65 0.14 -3.68 16 15 C 0.14 3.63 0.74 -10.71 -0.01 3.62 16 16 O -0.57 -15.09 11.83 -148.98 -1.76 -16.86 16 17 C -0.13 -2.54 4.78 30.59 0.15 -2.39 16 18 C 0.06 0.94 6.10 86.30 0.53 1.47 16 19 N -0.86 -12.44 9.62 -186.73 -1.80 -14.23 16 20 C -0.10 -2.80 5.11 30.64 0.16 -2.65 16 21 C 0.06 2.18 4.90 86.33 0.42 2.60 16 22 H 0.05 2.96 6.45 -2.39 -0.02 2.95 16 23 H 0.03 1.40 6.81 -2.39 -0.02 1.39 16 24 H 0.02 1.03 6.42 -2.39 -0.02 1.02 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.02 0.75 6.35 -2.38 -0.02 0.73 16 27 H 0.06 2.47 6.25 -2.39 -0.01 2.46 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.00 6.51 -2.39 -0.02 1.98 16 30 H 0.38 7.27 7.53 -74.06 -0.56 6.71 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 0.51 6.88 -2.39 -0.02 0.50 16 34 H 0.07 1.29 6.41 -2.39 -0.02 1.27 16 35 H 0.35 4.19 8.99 -89.69 -0.81 3.38 16 36 H 0.35 3.91 9.08 -89.69 -0.81 3.10 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.05 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.02 0.87 6.24 -2.38 -0.01 0.86 16 Total: -1.00 -64.50 298.64 -3.34 -67.84 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -1.12 Total: 19.95 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.12 Total: -21.09 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -5.61 Total: -96.23 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.76 Total: -16.86 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.50 -3.34 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717937644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.621 kcal (2) G-P(sol) polarization free energy of solvation -64.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds