Wall clock time and date at job start Mon Mar 30 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.53001 * 109.47345 * 240.00288 * 2 1 3 5 5 C 1.50697 * 109.47311 * 168.57018 * 4 2 1 6 6 H 1.08004 * 119.99750 * 355.89880 * 5 4 2 7 7 C 1.37877 * 119.99932 * 175.90697 * 5 4 2 8 8 N 1.31510 * 120.00224 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99685 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47339 * 59.99391 * 9 7 5 11 11 H 1.48500 * 109.47008 * 299.98996 * 9 7 5 12 12 H 1.48499 * 109.46778 * 179.97438 * 9 7 5 13 13 N 1.46899 * 109.47076 * 120.00403 * 2 1 3 14 14 C 1.46951 * 111.00154 * 149.75664 * 13 2 1 15 15 C 1.53046 * 109.36603 * 183.18346 * 14 13 2 16 16 N 1.46950 * 109.36705 * 301.60187 * 15 14 13 17 17 C 1.46951 * 110.88081 * 59.31670 * 16 15 14 18 18 C 1.46957 * 110.99815 * 273.55371 * 13 2 1 19 19 C 1.53008 * 109.49015 * 296.78189 * 18 13 2 20 20 C 1.53006 * 109.49018 * 56.82227 * 18 13 2 21 21 O 1.42896 * 109.47474 * 173.37967 * 20 18 13 22 22 H 1.09000 * 109.47261 * 306.68993 * 1 2 3 23 23 H 1.09001 * 109.47009 * 66.69332 * 1 2 3 24 24 H 1.09000 * 109.47189 * 186.68638 * 1 2 3 25 25 H 1.09005 * 109.46976 * 48.56949 * 4 2 1 26 26 H 1.08998 * 109.46921 * 288.57067 * 4 2 1 27 27 H 0.97001 * 120.00197 * 0.02562 * 8 7 5 28 28 H 1.08999 * 109.49152 * 303.15919 * 14 13 2 29 29 H 1.09002 * 109.48874 * 63.21767 * 14 13 2 30 30 H 1.09006 * 109.48913 * 181.62694 * 15 14 13 31 31 H 1.09003 * 109.48921 * 61.56762 * 15 14 13 32 32 H 1.00906 * 110.99927 * 183.18796 * 16 15 14 33 33 H 1.09006 * 109.48870 * 180.71090 * 17 16 15 34 34 H 1.09003 * 109.50725 * 60.66164 * 17 16 15 35 35 H 1.09000 * 109.46986 * 59.99948 * 19 18 13 36 36 H 1.09002 * 109.46927 * 180.02562 * 19 18 13 37 37 H 1.08996 * 109.46570 * 299.99435 * 19 18 13 38 38 H 1.09004 * 109.46992 * 293.38151 * 20 18 13 39 39 H 1.09001 * 109.46754 * 53.37471 * 20 18 13 40 40 H 0.96695 * 114.00254 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5205 -0.4820 -1.3982 6 1 4.0326 0.1770 -0.7127 7 6 4.2210 -1.1045 -2.4095 8 7 3.5975 -1.9072 -3.2439 9 14 6.0563 -0.8085 -2.5936 10 1 6.7538 -1.2398 -1.3557 11 1 6.3039 0.6376 -2.8231 12 1 6.5700 -1.5884 -3.7481 13 7 2.0196 -0.6926 1.1994 14 6 3.3126 -1.3417 0.9417 15 6 3.7488 -2.1162 2.1876 16 7 3.8441 -1.1929 3.3268 17 6 2.5512 -0.5437 3.5845 18 6 2.1150 0.2308 2.3386 19 6 3.1440 1.3199 2.0283 20 6 0.7499 0.8749 2.5893 21 8 0.8028 1.6523 3.7871 22 1 -0.3634 0.6140 0.8241 23 1 -0.3633 0.4066 -0.9438 24 1 -0.3633 -1.0207 0.1197 25 1 1.5200 -0.3385 -2.1275 26 1 1.8526 -1.7906 -1.1534 27 1 2.6446 -2.0612 -3.1481 28 1 3.2133 -2.0296 0.1021 29 1 4.0592 -0.5838 0.7048 30 1 4.7214 -2.5748 2.0087 31 1 3.0158 -2.8920 2.4087 32 1 4.1805 -1.6686 4.1507 33 1 2.6506 0.1442 4.4242 34 1 1.8043 -1.3014 3.8217 35 1 2.8340 1.8700 1.1399 36 1 3.2147 2.0043 2.8737 37 1 4.1164 0.8608 1.8506 38 1 0.4925 1.5195 1.7489 39 1 -0.0054 0.0961 2.6946 40 1 -0.0302 2.0905 4.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:26 Heat of formation + Delta-G solvation = -25.966104 kcal Electronic energy + Delta-G solvation = -19660.953136 eV Core-core repulsion = 16897.294424 eV Total energy + Delta-G solvation = -2763.658711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.90045 -36.46216 -35.42522 -33.21535 -31.62124 -30.44706 -27.48075 -26.79992 -25.83011 -24.14677 -22.90771 -21.16733 -19.82665 -17.68772 -17.52856 -16.77901 -16.21538 -14.99320 -14.80994 -14.07133 -13.98759 -13.82655 -13.66706 -13.24414 -13.15046 -12.48940 -12.40626 -12.13851 -11.71504 -11.41271 -11.10244 -11.02141 -10.85669 -10.67876 -10.48402 -10.40278 -10.13050 -10.06475 -9.83611 -9.60681 -9.25995 -8.49165 -8.34084 -8.10975 -7.39930 -6.33295 -4.00130 3.44935 3.45282 3.63682 4.15476 4.54074 4.57894 4.82651 5.16512 5.38168 5.40766 5.44158 5.68967 5.72385 5.76236 5.88791 5.96231 6.00008 6.07233 6.13490 6.17826 6.27095 6.34795 6.47669 6.51448 6.70775 6.75641 6.79737 6.96017 7.21029 7.31661 7.42389 7.43086 7.66820 7.72489 7.91797 8.06043 8.18371 8.44319 8.86606 9.64748 11.04982 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.008907 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.145390 B = 3142.995165 C = 3612.210584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 H 0.044 0.956 4 C 0.007 3.993 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.016 3.984 8 N -0.912 5.912 9 Si 1.060 2.940 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.283 1.283 13 N -0.521 5.521 14 C 0.064 3.936 15 C 0.049 3.951 16 N -0.689 5.689 17 C 0.082 3.918 18 C 0.114 3.886 19 C -0.164 4.164 20 C 0.084 3.916 21 O -0.574 6.574 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.009 0.991 26 H 0.019 0.981 27 H 0.269 0.731 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.332 0.668 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 3.464 12.191 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 H 0.062 0.938 4 C -0.030 4.030 5 C -0.633 4.633 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.549 5.549 9 Si 0.888 3.112 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.209 1.209 13 N -0.247 5.247 14 C -0.062 4.062 15 C -0.080 4.080 16 N -0.320 5.320 17 C -0.048 4.048 18 C 0.023 3.977 19 C -0.222 4.222 20 C 0.006 3.994 21 O -0.378 6.378 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.612 2.989 10.998 11.692 hybrid contribution -1.929 0.490 1.057 2.253 sum -4.541 3.479 12.054 13.343 Atomic orbital electron populations 1.22246 0.96819 1.01566 1.00398 1.21729 0.93003 0.96923 0.91016 0.93835 1.19492 0.96651 0.95647 0.91182 1.22113 0.93494 1.30984 1.16674 0.92857 1.25686 1.06147 0.94112 0.92810 1.70780 1.12079 1.35042 1.36978 0.83659 0.75012 0.76091 0.76393 1.21231 1.21602 1.20871 1.62393 1.28776 1.29184 1.04390 1.22791 0.89581 0.98964 0.94910 1.22323 0.99799 0.93847 0.92059 1.60521 1.27911 1.35047 1.08472 1.21800 0.89492 0.96764 0.96719 1.20902 0.92596 0.91861 0.92302 1.22253 1.00700 0.98584 1.00700 1.22617 0.97330 0.93520 0.85971 1.86432 1.38895 1.68159 1.44317 0.93145 0.93188 0.92663 0.97272 0.96307 0.92092 0.87568 0.91350 0.91007 0.95614 0.85103 0.90493 0.95500 0.93078 0.92806 0.90960 0.92637 0.93174 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.81 37.16 0.33 -2.32 16 2 C 0.08 1.66 1.84 -67.71 -0.12 1.54 16 3 H 0.04 0.94 5.48 -51.93 -0.28 0.66 16 4 C 0.01 0.18 3.35 -27.88 -0.09 0.09 16 5 C -0.59 -15.79 5.91 -34.44 -0.20 -15.99 16 6 H 0.05 1.43 5.91 -52.48 -0.31 1.12 16 7 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 8 N -0.91 -27.14 13.65 55.43 0.76 -26.38 16 9 Si 1.06 24.96 29.90 -169.99 -5.08 19.87 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 N -0.52 -10.12 4.39 -210.95 -0.93 -11.05 16 14 C 0.06 1.35 3.58 -3.77 -0.01 1.34 16 15 C 0.05 0.87 6.72 -3.77 -0.03 0.84 16 16 N -0.69 -11.03 6.22 -113.64 -0.71 -11.74 16 17 C 0.08 1.32 5.18 -3.77 -0.02 1.30 16 18 C 0.11 1.96 0.51 -131.54 -0.07 1.89 16 19 C -0.16 -2.97 7.63 37.16 0.28 -2.69 16 20 C 0.08 1.23 4.27 37.16 0.16 1.39 16 21 O -0.57 -7.46 12.36 -35.23 -0.44 -7.90 16 22 H 0.05 0.75 4.33 -51.93 -0.23 0.53 16 23 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.01 0.24 8.03 -51.93 -0.42 -0.18 16 26 H 0.02 0.49 6.93 -51.93 -0.36 0.13 16 27 H 0.27 7.99 7.20 -40.82 -0.29 7.70 16 28 H 0.11 2.56 5.29 -51.93 -0.27 2.29 16 29 H 0.07 1.58 3.86 -51.93 -0.20 1.38 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.33 4.45 8.90 -39.29 -0.35 4.10 16 33 H 0.08 1.20 7.59 -51.93 -0.39 0.80 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.97 6.11 -51.93 -0.32 0.65 16 36 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.07 1.44 5.94 -51.93 -0.31 1.13 16 38 H 0.06 0.83 5.65 -51.93 -0.29 0.53 16 39 H 0.05 0.72 7.67 -51.93 -0.40 0.33 16 40 H 0.37 3.03 9.12 45.56 0.42 3.44 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -29.54 287.64 -7.26 -36.80 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.33 Total: 8.32 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.13 Total: -12.26 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.88 Total: -49.17 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.44 Total: -7.90 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.54 -7.26 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.831 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds