Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.53001 * 109.47345 * 240.00288 * 2 1 3 5 5 C 1.50697 * 109.47311 * 168.57018 * 4 2 1 6 6 H 1.08004 * 119.99750 * 355.89880 * 5 4 2 7 7 C 1.37877 * 119.99932 * 175.90697 * 5 4 2 8 8 N 1.31510 * 120.00224 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99685 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47339 * 59.99391 * 9 7 5 11 11 H 1.48500 * 109.47008 * 299.98996 * 9 7 5 12 12 H 1.48499 * 109.46778 * 179.97438 * 9 7 5 13 13 N 1.46899 * 109.47076 * 120.00403 * 2 1 3 14 14 C 1.46951 * 111.00154 * 149.75664 * 13 2 1 15 15 C 1.53046 * 109.36603 * 183.18346 * 14 13 2 16 16 N 1.46950 * 109.36705 * 301.60187 * 15 14 13 17 17 C 1.46951 * 110.88081 * 59.31670 * 16 15 14 18 18 C 1.46957 * 110.99815 * 273.55371 * 13 2 1 19 19 C 1.53008 * 109.49015 * 296.78189 * 18 13 2 20 20 C 1.53006 * 109.49018 * 56.82227 * 18 13 2 21 21 O 1.42896 * 109.47474 * 173.37967 * 20 18 13 22 22 H 1.09000 * 109.47261 * 306.68993 * 1 2 3 23 23 H 1.09001 * 109.47009 * 66.69332 * 1 2 3 24 24 H 1.09000 * 109.47189 * 186.68638 * 1 2 3 25 25 H 1.09005 * 109.46976 * 48.56949 * 4 2 1 26 26 H 1.08998 * 109.46921 * 288.57067 * 4 2 1 27 27 H 0.97001 * 120.00197 * 0.02562 * 8 7 5 28 28 H 1.08999 * 109.49152 * 303.15919 * 14 13 2 29 29 H 1.09002 * 109.48874 * 63.21767 * 14 13 2 30 30 H 1.09006 * 109.48913 * 181.62694 * 15 14 13 31 31 H 1.09003 * 109.48921 * 61.56762 * 15 14 13 32 32 H 1.00906 * 110.99927 * 183.18796 * 16 15 14 33 33 H 1.09006 * 109.48870 * 180.71090 * 17 16 15 34 34 H 1.09003 * 109.50725 * 60.66164 * 17 16 15 35 35 H 1.09000 * 109.46986 * 59.99948 * 19 18 13 36 36 H 1.09002 * 109.46927 * 180.02562 * 19 18 13 37 37 H 1.08996 * 109.46570 * 299.99435 * 19 18 13 38 38 H 1.09004 * 109.46992 * 293.38151 * 20 18 13 39 39 H 1.09001 * 109.46754 * 53.37471 * 20 18 13 40 40 H 0.96695 * 114.00254 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5205 -0.4820 -1.3982 6 1 4.0326 0.1770 -0.7127 7 6 4.2210 -1.1045 -2.4095 8 7 3.5975 -1.9072 -3.2439 9 14 6.0563 -0.8085 -2.5936 10 1 6.7538 -1.2398 -1.3557 11 1 6.3039 0.6376 -2.8231 12 1 6.5700 -1.5884 -3.7481 13 7 2.0196 -0.6926 1.1994 14 6 3.3126 -1.3417 0.9417 15 6 3.7488 -2.1162 2.1876 16 7 3.8441 -1.1929 3.3268 17 6 2.5512 -0.5437 3.5845 18 6 2.1150 0.2308 2.3386 19 6 3.1440 1.3199 2.0283 20 6 0.7499 0.8749 2.5893 21 8 0.8028 1.6523 3.7871 22 1 -0.3634 0.6140 0.8241 23 1 -0.3633 0.4066 -0.9438 24 1 -0.3633 -1.0207 0.1197 25 1 1.5200 -0.3385 -2.1275 26 1 1.8526 -1.7906 -1.1534 27 1 2.6446 -2.0612 -3.1481 28 1 3.2133 -2.0296 0.1021 29 1 4.0592 -0.5838 0.7048 30 1 4.7214 -2.5748 2.0087 31 1 3.0158 -2.8920 2.4087 32 1 4.1805 -1.6686 4.1507 33 1 2.6506 0.1442 4.4242 34 1 1.8043 -1.3014 3.8217 35 1 2.8340 1.8700 1.1399 36 1 3.2147 2.0043 2.8737 37 1 4.1164 0.8608 1.8506 38 1 0.4925 1.5195 1.7489 39 1 -0.0054 0.0961 2.6946 40 1 -0.0302 2.0905 4.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719163232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -50.525322 kcal Electronic energy + Delta-G solvation = -19662.018103 eV Core-core repulsion = 16897.294424 eV Total energy + Delta-G solvation = -2764.723679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37968 -37.64797 -36.97120 -35.03289 -33.23229 -31.96337 -29.32161 -28.24316 -27.24842 -25.52855 -24.93283 -22.64685 -21.47619 -19.31609 -18.94188 -18.43471 -17.61905 -16.37694 -16.21530 -15.65458 -15.55070 -15.46441 -15.27883 -14.76541 -14.53320 -14.19541 -13.85828 -13.64306 -13.30556 -12.95494 -12.79529 -12.64616 -12.51949 -12.30294 -12.12560 -11.99899 -11.98000 -11.65844 -11.14674 -11.04590 -10.81065 -10.52365 -10.49249 -9.43250 -9.01990 -8.56397 -6.23200 1.51456 1.57858 1.76367 2.56747 2.83595 3.22113 3.30693 3.55207 3.88120 4.04302 4.08615 4.24161 4.38647 4.41229 4.43413 4.50055 4.57228 4.62723 4.69728 4.79974 4.84890 4.94309 4.96327 5.05858 5.08785 5.14356 5.20025 5.28738 5.36297 5.49795 5.63112 5.99529 6.01251 6.23130 6.28116 6.43260 6.58253 6.64076 6.94077 7.48352 8.80915 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.008907 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.145390 B = 3142.995165 C = 3612.210584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.034 0.966 4 C 0.014 3.986 5 C -0.584 4.584 6 H 0.050 0.950 7 C -0.035 4.035 8 N -0.941 5.941 9 Si 1.102 2.898 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.518 5.518 14 C 0.073 3.927 15 C 0.059 3.941 16 N -0.691 5.691 17 C 0.087 3.913 18 C 0.106 3.894 19 C -0.154 4.154 20 C 0.094 3.906 21 O -0.579 6.579 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.052 0.948 25 H -0.012 1.012 26 H -0.004 1.004 27 H 0.255 0.745 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.352 0.648 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 4.354 14.493 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 H 0.052 0.948 4 C -0.023 4.023 5 C -0.622 4.622 6 H 0.068 0.932 7 C -0.232 4.232 8 N -0.580 5.580 9 Si 0.925 3.075 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.244 5.244 14 C -0.055 4.055 15 C -0.071 4.071 16 N -0.323 5.323 17 C -0.042 4.042 18 C 0.015 3.985 19 C -0.212 4.212 20 C 0.015 3.985 21 O -0.387 6.387 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.848 3.899 13.343 14.189 hybrid contribution -1.894 0.260 0.409 1.955 sum -4.741 4.159 13.751 15.129 Atomic orbital electron populations 1.22174 0.94021 1.02178 1.01870 1.21592 0.95211 0.95554 0.89709 0.94832 1.19380 0.95725 0.94617 0.92627 1.22319 0.94495 1.29708 1.15714 0.93160 1.26986 1.09801 0.93685 0.92736 1.70905 1.11374 1.37146 1.38541 0.83111 0.70853 0.76689 0.76863 1.19395 1.20120 1.21211 1.62445 1.27690 1.29772 1.04512 1.22400 0.89768 0.97805 0.95540 1.22110 1.00133 0.93574 0.91272 1.60438 1.28207 1.34869 1.08823 1.21775 0.89398 0.96870 0.96184 1.21094 0.94213 0.91465 0.91697 1.22140 0.99809 0.98794 1.00502 1.22345 0.95508 0.93826 0.86801 1.86371 1.41035 1.68130 1.43161 0.90034 0.93027 0.92863 0.99405 0.98527 0.93590 0.91583 0.93939 0.90372 0.95152 0.82934 0.89220 0.95094 0.94502 0.91527 0.93102 0.92796 0.92318 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 8.81 71.98 0.63 -4.20 16 2 C 0.09 3.59 1.84 44.92 0.08 3.67 16 3 H 0.03 1.45 5.48 -2.39 -0.01 1.44 16 4 C 0.01 0.70 3.35 29.85 0.10 0.80 16 5 C -0.58 -31.93 5.91 25.60 0.15 -31.78 16 6 H 0.05 2.76 5.91 -2.91 -0.02 2.74 16 7 C -0.03 -1.97 5.46 84.66 0.46 -1.51 16 8 N -0.94 -57.87 13.65 21.45 0.29 -57.57 16 9 Si 1.10 50.74 29.90 68.60 2.05 52.79 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 N -0.52 -19.79 4.39 -821.32 -3.61 -23.40 16 14 C 0.07 3.07 3.58 86.31 0.31 3.38 16 15 C 0.06 2.01 6.72 86.31 0.58 2.59 16 16 N -0.69 -20.52 6.22 -513.46 -3.19 -23.71 16 17 C 0.09 2.54 5.18 86.31 0.45 2.99 16 18 C 0.11 3.41 0.51 3.54 0.00 3.41 16 19 C -0.15 -5.37 7.63 71.98 0.55 -4.82 16 20 C 0.09 2.45 4.27 71.98 0.31 2.76 16 21 O -0.58 -12.76 12.36 -148.98 -1.84 -14.60 16 22 H 0.08 2.21 4.33 -2.39 -0.01 2.20 16 23 H 0.05 1.69 8.07 -2.39 -0.02 1.67 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H -0.01 -0.67 8.03 -2.38 -0.02 -0.69 16 26 H 0.00 -0.19 6.93 -2.39 -0.02 -0.21 16 27 H 0.25 15.90 7.20 -92.71 -0.67 15.23 16 28 H 0.07 3.31 5.29 -2.39 -0.01 3.30 16 29 H 0.04 2.00 3.86 -2.39 -0.01 1.99 16 30 H 0.08 2.55 8.14 -2.38 -0.02 2.54 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.35 8.35 8.90 -89.69 -0.80 7.55 16 33 H 0.09 2.44 7.59 -2.38 -0.02 2.42 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.04 1.36 6.11 -2.39 -0.01 1.35 16 36 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16 37 H 0.05 1.98 5.94 -2.39 -0.01 1.97 16 38 H 0.05 1.44 5.65 -2.38 -0.01 1.42 16 39 H 0.06 1.47 7.67 -2.39 -0.02 1.45 16 40 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16 Total: -1.00 -64.78 287.64 -2.99 -67.77 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.31 Total: 21.44 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.63 Total: -22.72 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -6.51 Total: -104.69 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.84 Total: -14.60 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.79 kcal Total: -64.78 -2.99 -67.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.243 kcal (2) G-P(sol) polarization free energy of solvation -64.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds