Wall clock time and date at job start Mon Mar 30 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47146 * 2 1 4 4 C 1.53000 * 109.47194 * 239.99772 * 2 1 3 5 5 C 1.50699 * 109.47180 * 175.41224 * 4 2 1 6 6 H 1.08002 * 119.99703 * 354.95490 * 5 4 2 7 7 C 1.37876 * 120.00086 * 174.95660 * 5 4 2 8 8 N 1.31515 * 120.00108 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00050 * 359.72150 * 7 5 4 10 10 H 1.48502 * 109.47374 * 270.27850 * 9 7 5 11 11 H 1.48506 * 109.47044 * 30.27714 * 9 7 5 12 12 H 1.48502 * 109.47220 * 150.27506 * 9 7 5 13 13 N 1.46903 * 109.46824 * 119.99934 * 2 1 3 14 14 C 1.46953 * 111.00107 * 40.19257 * 13 2 1 15 15 C 1.53057 * 109.36169 * 176.80962 * 14 13 2 16 16 N 1.46953 * 109.36215 * 58.40334 * 15 14 13 17 17 C 1.46953 * 110.88129 * 300.67501 * 16 15 14 18 18 C 1.46956 * 110.99858 * 276.38758 * 13 2 1 19 19 C 1.53004 * 109.48715 * 63.22804 * 18 13 2 20 20 C 1.52994 * 109.49159 * 303.15870 * 18 13 2 21 21 O 1.42900 * 109.47143 * 185.35809 * 20 18 13 22 22 H 1.09009 * 109.47309 * 179.25287 * 1 2 3 23 23 H 1.09000 * 109.47503 * 299.24950 * 1 2 3 24 24 H 1.08997 * 109.47316 * 59.25154 * 1 2 3 25 25 H 1.09002 * 109.47168 * 55.41397 * 4 2 1 26 26 H 1.08997 * 109.47378 * 295.41513 * 4 2 1 27 27 H 0.96998 * 119.99918 * 179.72480 * 8 7 5 28 28 H 1.08990 * 109.48874 * 296.77369 * 14 13 2 29 29 H 1.09005 * 109.48969 * 56.84515 * 14 13 2 30 30 H 1.08998 * 109.48682 * 178.36774 * 15 14 13 31 31 H 1.09002 * 109.48698 * 298.42988 * 15 14 13 32 32 H 1.00901 * 110.99522 * 176.81237 * 16 15 14 33 33 H 1.09000 * 109.49125 * 179.29394 * 17 16 15 34 34 H 1.09001 * 109.48975 * 299.33292 * 17 16 15 35 35 H 1.09004 * 109.47155 * 45.05472 * 19 18 13 36 36 H 1.08992 * 109.47006 * 165.05881 * 19 18 13 37 37 H 1.09005 * 109.46703 * 285.05611 * 19 18 13 38 38 H 1.08998 * 109.47324 * 305.36013 * 20 18 13 39 39 H 1.09005 * 109.47008 * 65.35887 * 20 18 13 40 40 H 0.96704 * 114.00167 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5427 -0.6236 -1.3073 6 1 4.0740 -0.0315 -0.5769 7 6 4.2393 -1.2902 -2.2930 8 7 5.5507 -1.2054 -2.3434 9 14 3.3209 -2.3206 -3.5517 10 1 3.1825 -3.7105 -3.0476 11 1 1.9731 -1.7398 -3.7784 12 1 4.0770 -2.3305 -4.8298 13 7 2.0196 -0.6925 1.1995 14 6 1.2071 -1.8822 1.4893 15 6 1.7961 -2.6174 2.6956 16 7 1.8276 -1.7104 3.8513 17 6 2.6401 -0.5207 3.5615 18 6 2.0512 0.2146 2.3552 19 6 0.6290 0.6743 2.6823 20 6 2.9184 1.4312 2.0258 21 8 3.0511 2.2507 3.1889 22 1 -0.3634 -1.0276 -0.0134 23 1 -0.3634 0.5021 0.8966 24 1 -0.3634 0.5254 -0.8832 25 1 1.6111 -0.2571 -2.1373 26 1 1.7453 -1.7699 -1.2091 27 1 6.0410 -1.6775 -3.0345 28 1 0.1844 -1.5785 1.7125 29 1 1.2095 -2.5441 0.6232 30 1 1.1783 -3.4842 2.9303 31 1 2.8093 -2.9450 2.4625 32 1 2.1640 -2.1860 4.6751 33 1 2.6378 0.1412 4.4275 34 1 3.6630 -0.8244 3.3388 35 1 -0.0446 -0.1823 2.6569 36 1 0.6112 1.1213 3.6762 37 1 0.3073 1.4115 1.9466 38 1 3.9042 1.0977 1.7019 39 1 2.4491 2.0065 1.2276 40 1 3.5894 3.0425 3.0530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:30 Heat of formation + Delta-G solvation = -23.395209 kcal Electronic energy + Delta-G solvation = -19478.097376 eV Core-core repulsion = 16714.550147 eV Total energy + Delta-G solvation = -2763.547229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04832 -36.32809 -35.40593 -32.78862 -31.92704 -30.29120 -28.24318 -27.10515 -25.80130 -24.63777 -22.56074 -21.45187 -19.60078 -17.66196 -17.36149 -16.54188 -16.30772 -15.04949 -14.92601 -14.51859 -14.07808 -14.00346 -13.65344 -13.45582 -12.96631 -12.55248 -12.45318 -12.07714 -11.86695 -11.66096 -11.56380 -11.27021 -10.96099 -10.85522 -10.64888 -10.51010 -10.30390 -9.88338 -9.70377 -9.40442 -9.38712 -9.02048 -8.42629 -8.22477 -7.49177 -5.92324 -3.85684 3.35052 3.42709 3.45472 4.12382 4.45669 4.53738 4.81974 5.12939 5.35784 5.36463 5.43461 5.52876 5.65609 5.69266 5.76422 5.81599 5.85357 5.96702 5.99811 6.08239 6.19945 6.21491 6.26779 6.30660 6.43333 6.47444 6.56313 6.69867 6.84706 7.14451 7.19690 7.31439 7.54085 7.78406 7.83227 7.87490 7.98765 8.70014 9.16884 9.71257 11.21791 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.008353 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.126962 B = 3351.235319 C = 3539.098895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.002 4.002 5 C -0.486 4.486 6 H 0.074 0.926 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.498 5.498 14 C 0.057 3.943 15 C 0.056 3.944 16 N -0.691 5.691 17 C 0.078 3.922 18 C 0.117 3.883 19 C -0.163 4.163 20 C 0.085 3.915 21 O -0.576 6.576 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.336 0.664 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.503 2.210 10.329 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.018 4.018 3 H 0.093 0.907 4 C -0.040 4.040 5 C -0.525 4.525 6 H 0.092 0.908 7 C -0.138 4.138 8 N -0.550 5.550 9 Si 0.702 3.298 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.222 5.222 14 C -0.071 4.071 15 C -0.073 4.073 16 N -0.321 5.321 17 C -0.052 4.052 18 C 0.026 3.974 19 C -0.222 4.222 20 C 0.007 3.993 21 O -0.380 6.380 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.827 1.821 10.218 13.625 hybrid contribution 0.125 -0.396 -0.960 1.046 sum -8.702 1.425 9.258 12.785 Atomic orbital electron populations 1.23055 0.99254 1.01871 1.02131 1.21793 0.90471 0.98320 0.91232 0.90689 1.19610 0.97825 0.95049 0.91507 1.20986 0.89340 1.29618 1.12532 0.90776 1.24993 0.94653 0.96622 0.97546 1.69907 1.06132 1.44234 1.34704 0.86878 0.80288 0.81209 0.81383 1.20616 1.19383 1.21721 1.62333 1.52336 1.05805 1.01759 1.22186 0.95144 0.92795 0.97010 1.22030 1.00161 0.94555 0.90578 1.60545 1.56631 1.08986 1.05941 1.21887 0.94469 0.91647 0.97175 1.20869 0.94036 0.91386 0.91064 1.22551 0.97602 1.00857 1.01147 1.22290 0.99991 0.90778 0.86249 1.86364 1.75444 1.39263 1.36973 0.92771 0.91541 0.92959 0.96711 0.97005 0.93108 0.93849 0.90218 0.91109 0.94041 0.84689 0.90259 0.94502 0.91705 0.92676 0.92836 0.91971 0.93151 0.77734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.35 7.76 37.16 0.29 -3.06 16 2 C 0.09 1.74 1.87 -67.71 -0.13 1.62 16 3 H 0.08 1.49 5.40 -51.93 -0.28 1.21 16 4 C 0.00 -0.05 3.60 -27.88 -0.10 -0.15 16 5 C -0.49 -13.58 9.38 -34.44 -0.32 -13.90 16 6 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -28.16 13.96 55.43 0.77 -27.38 16 9 Si 0.87 21.95 27.37 -169.99 -4.65 17.30 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.49 6.70 56.52 0.38 -6.11 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 N -0.50 -9.32 4.08 -210.95 -0.86 -10.19 16 14 C 0.06 0.96 4.05 -3.77 -0.02 0.94 16 15 C 0.06 0.85 6.72 -3.77 -0.03 0.82 16 16 N -0.69 -9.76 6.49 -113.64 -0.74 -10.50 16 17 C 0.08 1.22 5.15 -3.77 -0.02 1.20 16 18 C 0.12 1.93 0.52 -131.54 -0.07 1.87 16 19 C -0.16 -2.48 6.25 37.16 0.23 -2.24 16 20 C 0.09 1.39 5.50 37.15 0.20 1.59 16 21 O -0.58 -8.04 12.58 -35.23 -0.44 -8.48 16 22 H 0.05 0.87 6.50 -51.92 -0.34 0.53 16 23 H 0.07 1.00 3.92 -51.93 -0.20 0.79 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.01 0.35 7.56 -51.93 -0.39 -0.04 16 26 H 0.01 0.28 6.12 -51.93 -0.32 -0.04 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.04 0.70 4.55 -51.93 -0.24 0.46 16 29 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.34 4.01 8.90 -39.29 -0.35 3.66 16 33 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.00 5.27 -51.93 -0.27 0.72 16 36 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.05 0.80 6.00 -51.93 -0.31 0.49 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.82 6.12 -51.93 -0.32 0.50 16 40 H 0.38 3.62 9.12 45.56 0.42 4.04 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -31.24 290.75 -7.06 -38.30 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.47 Total: 6.20 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.05 Total: -9.63 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.83 Total: -48.07 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.44 Total: -8.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.65 Total: 17.30 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.24 -7.06 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.906 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds