Wall clock time and date at job start Mon Mar 30 2020 04:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47146 * 2 1 4 4 C 1.53000 * 109.47194 * 239.99772 * 2 1 3 5 5 C 1.50699 * 109.47180 * 175.41224 * 4 2 1 6 6 H 1.08002 * 119.99703 * 354.95490 * 5 4 2 7 7 C 1.37876 * 120.00086 * 174.95660 * 5 4 2 8 8 N 1.31515 * 120.00108 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00050 * 359.72150 * 7 5 4 10 10 H 1.48502 * 109.47374 * 270.27850 * 9 7 5 11 11 H 1.48506 * 109.47044 * 30.27714 * 9 7 5 12 12 H 1.48502 * 109.47220 * 150.27506 * 9 7 5 13 13 N 1.46903 * 109.46824 * 119.99934 * 2 1 3 14 14 C 1.46953 * 111.00107 * 40.19257 * 13 2 1 15 15 C 1.53057 * 109.36169 * 176.80962 * 14 13 2 16 16 N 1.46953 * 109.36215 * 58.40334 * 15 14 13 17 17 C 1.46953 * 110.88129 * 300.67501 * 16 15 14 18 18 C 1.46956 * 110.99858 * 276.38758 * 13 2 1 19 19 C 1.53004 * 109.48715 * 63.22804 * 18 13 2 20 20 C 1.52994 * 109.49159 * 303.15870 * 18 13 2 21 21 O 1.42900 * 109.47143 * 185.35809 * 20 18 13 22 22 H 1.09009 * 109.47309 * 179.25287 * 1 2 3 23 23 H 1.09000 * 109.47503 * 299.24950 * 1 2 3 24 24 H 1.08997 * 109.47316 * 59.25154 * 1 2 3 25 25 H 1.09002 * 109.47168 * 55.41397 * 4 2 1 26 26 H 1.08997 * 109.47378 * 295.41513 * 4 2 1 27 27 H 0.96998 * 119.99918 * 179.72480 * 8 7 5 28 28 H 1.08990 * 109.48874 * 296.77369 * 14 13 2 29 29 H 1.09005 * 109.48969 * 56.84515 * 14 13 2 30 30 H 1.08998 * 109.48682 * 178.36774 * 15 14 13 31 31 H 1.09002 * 109.48698 * 298.42988 * 15 14 13 32 32 H 1.00901 * 110.99522 * 176.81237 * 16 15 14 33 33 H 1.09000 * 109.49125 * 179.29394 * 17 16 15 34 34 H 1.09001 * 109.48975 * 299.33292 * 17 16 15 35 35 H 1.09004 * 109.47155 * 45.05472 * 19 18 13 36 36 H 1.08992 * 109.47006 * 165.05881 * 19 18 13 37 37 H 1.09005 * 109.46703 * 285.05611 * 19 18 13 38 38 H 1.08998 * 109.47324 * 305.36013 * 20 18 13 39 39 H 1.09005 * 109.47008 * 65.35887 * 20 18 13 40 40 H 0.96704 * 114.00167 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5427 -0.6236 -1.3073 6 1 4.0740 -0.0315 -0.5769 7 6 4.2393 -1.2902 -2.2930 8 7 5.5507 -1.2054 -2.3434 9 14 3.3209 -2.3206 -3.5517 10 1 3.1825 -3.7105 -3.0476 11 1 1.9731 -1.7398 -3.7784 12 1 4.0770 -2.3305 -4.8298 13 7 2.0196 -0.6925 1.1995 14 6 1.2071 -1.8822 1.4893 15 6 1.7961 -2.6174 2.6956 16 7 1.8276 -1.7104 3.8513 17 6 2.6401 -0.5207 3.5615 18 6 2.0512 0.2146 2.3552 19 6 0.6290 0.6743 2.6823 20 6 2.9184 1.4312 2.0258 21 8 3.0511 2.2507 3.1889 22 1 -0.3634 -1.0276 -0.0134 23 1 -0.3634 0.5021 0.8966 24 1 -0.3634 0.5254 -0.8832 25 1 1.6111 -0.2571 -2.1373 26 1 1.7453 -1.7699 -1.2091 27 1 6.0410 -1.6775 -3.0345 28 1 0.1844 -1.5785 1.7125 29 1 1.2095 -2.5441 0.6232 30 1 1.1783 -3.4842 2.9303 31 1 2.8093 -2.9450 2.4625 32 1 2.1640 -2.1860 4.6751 33 1 2.6378 0.1412 4.4275 34 1 3.6630 -0.8244 3.3388 35 1 -0.0446 -0.1823 2.6569 36 1 0.6112 1.1213 3.6762 37 1 0.3073 1.4115 1.9466 38 1 3.9042 1.0977 1.7019 39 1 2.4491 2.0065 1.2276 40 1 3.5894 3.0425 3.0530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719163233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:29 Heat of formation + Delta-G solvation = -49.872968 kcal Electronic energy + Delta-G solvation = -19479.245538 eV Core-core repulsion = 16714.550147 eV Total energy + Delta-G solvation = -2764.695391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39077 -37.55970 -36.81093 -34.72515 -33.40660 -31.85145 -29.78745 -28.60426 -27.10951 -25.92546 -24.48261 -22.73036 -21.17276 -19.02022 -18.87816 -18.45602 -17.56157 -16.55051 -16.30219 -15.99235 -15.73393 -15.33725 -15.01119 -14.77126 -14.66392 -14.11274 -13.89999 -13.65406 -13.43236 -13.22174 -12.95664 -12.63365 -12.45523 -12.32075 -12.11246 -11.99631 -11.87126 -11.66304 -11.23778 -11.14068 -10.89996 -10.74478 -10.63034 -9.45359 -8.86754 -8.17028 -6.14658 1.36467 1.37696 1.48715 2.42015 2.83182 3.19571 3.27367 3.56042 3.85421 4.01593 4.08907 4.24924 4.31210 4.41684 4.46639 4.50692 4.52926 4.62587 4.69429 4.83037 4.87251 4.91737 4.98196 5.00176 5.04763 5.16259 5.17146 5.28530 5.30938 5.45728 5.56717 5.76337 5.94934 6.32573 6.45786 6.48185 6.58497 6.85994 6.91646 7.45564 9.00335 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.008353 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.126962 B = 3351.235319 C = 3539.098895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.093 3.907 3 H 0.065 0.935 4 C 0.000 4.000 5 C -0.482 4.482 6 H 0.035 0.965 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.249 1.249 12 H -0.290 1.290 13 N -0.526 5.526 14 C 0.055 3.945 15 C 0.060 3.940 16 N -0.680 5.680 17 C 0.084 3.916 18 C 0.113 3.887 19 C -0.151 4.151 20 C 0.095 3.905 21 O -0.574 6.574 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.017 0.983 32 H 0.352 0.648 33 H 0.089 0.911 34 H 0.010 0.990 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.049 0.951 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 1.867 10.952 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.015 4.015 3 H 0.083 0.917 4 C -0.037 4.037 5 C -0.520 4.520 6 H 0.053 0.947 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.172 1.172 12 H -0.217 1.217 13 N -0.251 5.251 14 C -0.073 4.073 15 C -0.070 4.070 16 N -0.311 5.311 17 C -0.046 4.046 18 C 0.023 3.977 19 C -0.209 4.209 20 C 0.016 3.984 21 O -0.381 6.381 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.029 0.971 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.485 1.495 10.869 15.883 hybrid contribution 1.039 -0.213 -1.064 1.502 sum -10.446 1.282 9.805 14.384 Atomic orbital electron populations 1.22937 0.96277 1.02651 1.03423 1.21588 0.92730 0.97141 0.90027 0.91681 1.19558 0.94613 0.95684 0.93869 1.21244 0.91801 1.28034 1.10958 0.94704 1.25897 0.95418 0.98341 1.00098 1.70075 1.08087 1.46000 1.36018 0.85783 0.79674 0.79486 0.78347 1.19952 1.17225 1.21673 1.62212 1.53550 1.06935 1.02382 1.22228 0.95868 0.91977 0.97197 1.22016 0.99246 0.95339 0.90362 1.60540 1.55906 1.08504 1.06188 1.21792 0.93221 0.92446 0.97151 1.20927 0.95200 0.91083 0.90471 1.22413 0.96094 1.00919 1.01460 1.22039 0.98110 0.91280 0.86938 1.86320 1.75951 1.40060 1.35789 0.92171 0.89812 0.92175 0.96440 0.96851 0.93181 0.92231 0.91623 0.88188 0.96495 0.82964 0.89283 0.97131 0.91415 0.92155 0.92488 0.95468 0.93322 0.75504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.83 7.76 71.98 0.56 -5.27 16 2 C 0.09 3.55 1.87 44.91 0.08 3.63 16 3 H 0.07 2.58 5.40 -2.39 -0.01 2.57 16 4 C 0.00 0.02 3.60 29.85 0.11 0.13 16 5 C -0.48 -27.58 9.38 25.60 0.24 -27.34 16 6 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 7 C 0.00 -0.17 5.47 84.65 0.46 0.29 16 8 N -0.96 -61.30 13.96 21.45 0.30 -61.00 16 9 Si 0.94 45.32 27.37 68.60 1.88 47.20 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.05 6.70 99.48 0.67 -10.38 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 N -0.53 -19.47 4.08 -821.32 -3.35 -22.83 16 14 C 0.06 1.77 4.05 86.31 0.35 2.12 16 15 C 0.06 1.71 6.72 86.31 0.58 2.29 16 16 N -0.68 -17.81 6.49 -513.44 -3.33 -21.15 16 17 C 0.08 2.56 5.15 86.31 0.44 3.00 16 18 C 0.11 3.65 0.52 3.53 0.00 3.65 16 19 C -0.15 -4.16 6.25 71.98 0.45 -3.71 16 20 C 0.10 3.13 5.50 71.98 0.40 3.53 16 21 O -0.57 -15.44 12.58 -148.98 -1.87 -17.31 16 22 H 0.06 1.73 6.50 -2.38 -0.02 1.72 16 23 H 0.08 2.23 3.92 -2.39 -0.01 2.22 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.02 0.80 7.56 -2.39 -0.02 0.78 16 26 H 0.01 0.61 6.12 -2.39 -0.01 0.60 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.06 1.73 4.55 -2.39 -0.01 1.71 16 29 H 0.07 2.28 6.95 -2.38 -0.02 2.26 16 30 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.35 7.56 8.90 -89.69 -0.80 6.76 16 33 H 0.09 2.54 7.60 -2.39 -0.02 2.52 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 1.84 5.27 -2.38 -0.01 1.83 16 36 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 37 H 0.06 1.53 6.00 -2.38 -0.01 1.52 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.60 6.12 -2.38 -0.01 1.59 16 40 H 0.40 7.20 9.12 -74.05 -0.68 6.52 16 Total: -1.00 -68.11 290.75 -3.17 -71.28 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.46 Total: 21.48 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.68 Total: -17.68 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -6.39 Total: -104.98 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.87 Total: -17.31 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -68.11 -3.17 -71.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds