Wall clock time and date at job start Mon Mar 30 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47441 * 2 1 4 4 C 1.52999 * 109.47056 * 119.99756 * 2 1 3 5 5 C 1.50702 * 109.47185 * 191.23390 * 4 2 1 6 6 H 1.08002 * 120.00193 * 4.42402 * 5 4 2 7 7 C 1.37883 * 120.00251 * 184.42642 * 5 4 2 8 8 N 1.31517 * 119.99495 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00135 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46961 * 120.00125 * 9 7 5 12 12 H 1.48505 * 109.46971 * 240.00044 * 9 7 5 13 13 N 1.46895 * 109.47419 * 239.99630 * 2 1 3 14 14 C 1.46954 * 111.02100 * 210.45107 * 13 2 1 15 15 C 1.53054 * 109.38418 * 176.82772 * 14 13 2 16 16 N 1.46965 * 109.36032 * 58.39447 * 15 14 13 17 17 C 1.46961 * 110.87905 * 300.67820 * 16 15 14 18 18 C 1.46957 * 110.99896 * 86.63989 * 13 2 1 19 19 C 1.52996 * 109.49033 * 63.20026 * 18 13 2 20 20 C 1.52998 * 109.48951 * 303.15541 * 18 13 2 21 21 O 1.42896 * 109.47515 * 186.17380 * 20 18 13 22 22 H 1.09001 * 109.47278 * 307.05086 * 1 2 3 23 23 H 1.08994 * 109.47009 * 67.04885 * 1 2 3 24 24 H 1.09002 * 109.47076 * 187.05155 * 1 2 3 25 25 H 1.09003 * 109.46989 * 311.22984 * 4 2 1 26 26 H 1.09000 * 109.47791 * 71.23001 * 4 2 1 27 27 H 0.97004 * 119.99862 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.48953 * 56.85426 * 14 13 2 29 29 H 1.09001 * 109.49094 * 296.81227 * 14 13 2 30 30 H 1.08992 * 109.49006 * 298.43033 * 15 14 13 31 31 H 1.08995 * 109.48658 * 178.35704 * 15 14 13 32 32 H 1.00900 * 110.99938 * 176.80873 * 16 15 14 33 33 H 1.09002 * 109.48705 * 299.35289 * 17 16 15 34 34 H 1.08992 * 109.48804 * 179.28934 * 17 16 15 35 35 H 1.08996 * 109.47408 * 299.95849 * 19 18 13 36 36 H 1.09006 * 109.46789 * 59.96063 * 19 18 13 37 37 H 1.09000 * 109.46992 * 179.97438 * 19 18 13 38 38 H 1.09003 * 109.46793 * 66.17743 * 20 18 13 39 39 H 1.09002 * 109.47379 * 306.17713 * 20 18 13 40 40 H 0.96693 * 114.00530 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5213 -0.4860 1.3955 6 1 4.0333 0.1749 0.7118 7 6 4.2231 -1.1146 2.4023 8 7 3.5995 -1.9191 3.2352 9 14 6.0593 -0.8237 2.5831 10 1 6.5177 0.1169 1.5293 11 1 6.3390 -0.2422 3.9206 12 1 6.7810 -2.1140 2.4436 13 7 2.0197 -0.6925 -1.1993 14 6 3.3103 -1.3460 -0.9407 15 6 3.7466 -2.1200 -2.1869 16 7 3.8465 -1.1951 -3.3247 17 6 2.5557 -0.5421 -3.5837 18 6 2.1194 0.2319 -2.3374 19 6 3.1504 1.3179 -2.0240 20 6 0.7565 0.8795 -2.5899 21 8 0.8164 1.6665 -3.7812 22 1 -0.3634 0.6192 0.8202 23 1 -0.3633 0.4007 -0.9463 24 1 -0.3633 -1.0199 0.1262 25 1 1.5224 -0.3360 2.1279 26 1 1.8493 -1.7903 1.1550 27 1 4.0933 -2.3616 3.9432 28 1 3.2075 -2.0349 -0.1022 29 1 4.0588 -0.5907 -0.7010 30 1 3.0118 -2.8934 -2.4104 31 1 4.7176 -2.5813 -2.0070 32 1 4.1830 -1.6705 -4.1486 33 1 1.8074 -1.2977 -3.8231 34 1 2.6585 0.1468 -4.4221 35 1 2.8399 1.8684 -1.1360 36 1 4.1214 0.8562 -1.8442 37 1 3.2245 2.0031 -2.8685 38 1 0.4955 1.5177 -1.7457 39 1 0.0008 0.1025 -2.7054 40 1 -0.0149 2.1074 -4.0036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:33 Heat of formation + Delta-G solvation = -21.826517 kcal Electronic energy + Delta-G solvation = -19628.399187 eV Core-core repulsion = 16864.919982 eV Total energy + Delta-G solvation = -2763.479205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83904 -36.40318 -35.30110 -33.01670 -31.60946 -30.37189 -27.79782 -26.74122 -25.91642 -24.08858 -22.94870 -21.14921 -19.58641 -17.69153 -17.45128 -16.35597 -16.12405 -14.96048 -14.70045 -14.45092 -13.99697 -13.89670 -13.59347 -13.10590 -13.01631 -12.36767 -12.25412 -11.84280 -11.72651 -11.42557 -11.30164 -10.96386 -10.84722 -10.56340 -10.53178 -10.41618 -10.26908 -9.95077 -9.78513 -9.55252 -8.99693 -8.95370 -8.40001 -8.06888 -7.30600 -6.02187 -3.99686 3.29549 3.38396 3.42716 4.21336 4.44551 4.61944 4.88027 5.22329 5.32192 5.43892 5.49175 5.76796 5.78928 5.81957 5.97054 6.00637 6.08029 6.15252 6.18671 6.23158 6.32360 6.40809 6.54834 6.58144 6.76800 6.87701 6.90847 7.04517 7.30696 7.42018 7.55475 7.66780 7.72968 7.76725 7.96103 8.02006 8.17144 8.36171 8.99352 9.58380 11.08527 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.008870 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.581073 B = 3155.965948 C = 3622.479374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.042 0.958 4 C 0.020 3.980 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.521 5.521 14 C 0.061 3.939 15 C 0.049 3.951 16 N -0.690 5.690 17 C 0.082 3.918 18 C 0.114 3.886 19 C -0.164 4.164 20 C 0.084 3.916 21 O -0.575 6.575 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.018 0.982 26 H 0.030 0.970 27 H 0.259 0.741 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.332 0.668 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 3.153 -11.717 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 H 0.060 0.940 4 C -0.017 4.017 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.247 5.247 14 C -0.065 4.065 15 C -0.080 4.080 16 N -0.320 5.320 17 C -0.048 4.048 18 C 0.023 3.977 19 C -0.223 4.223 20 C 0.006 3.994 21 O -0.379 6.379 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.976 2.967 -11.286 12.328 hybrid contribution 0.485 0.136 0.105 0.515 sum -3.490 3.103 -11.181 12.117 Atomic orbital electron populations 1.22227 0.96843 1.01580 1.00341 1.21887 0.93135 0.96919 0.91398 0.94013 1.19375 0.95545 0.96289 0.90501 1.21372 0.93589 1.26888 1.13342 0.92190 1.24930 0.98018 0.95551 0.95838 1.69971 1.35677 1.29999 1.17569 0.86655 0.86097 0.78098 0.77992 1.19670 1.21167 1.20997 1.62366 1.28760 1.29037 1.04547 1.22828 0.89644 0.99003 0.95069 1.22322 0.99724 0.93871 0.92106 1.60532 1.28080 1.34865 1.08530 1.21806 0.89507 0.96734 0.96746 1.20903 0.92553 0.91847 0.92370 1.22252 1.00669 0.98619 1.00717 1.22615 0.97330 0.93330 0.86096 1.86432 1.38899 1.67579 1.44970 0.93365 0.92975 0.92766 0.96408 0.95212 0.93089 0.87122 0.91518 0.95526 0.91135 0.85185 0.95482 0.90575 0.93008 0.91018 0.92882 0.92664 0.93077 0.78075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.91 37.16 0.33 -2.31 16 2 C 0.07 1.51 1.84 -67.72 -0.12 1.39 16 3 H 0.04 0.89 5.47 -51.93 -0.28 0.61 16 4 C 0.02 0.50 4.01 -27.88 -0.11 0.38 16 5 C -0.51 -13.53 5.89 -34.44 -0.20 -13.73 16 6 H 0.06 1.59 5.92 -52.49 -0.31 1.28 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 9 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -10.05 4.39 -210.95 -0.93 -10.98 16 14 C 0.06 1.27 3.58 -3.77 -0.01 1.26 16 15 C 0.05 0.86 6.72 -3.76 -0.03 0.84 16 16 N -0.69 -11.00 6.22 -113.63 -0.71 -11.71 16 17 C 0.08 1.31 5.19 -3.76 -0.02 1.29 16 18 C 0.11 1.95 0.51 -131.54 -0.07 1.88 16 19 C -0.16 -2.97 7.63 37.16 0.28 -2.68 16 20 C 0.08 1.23 4.27 37.16 0.16 1.39 16 21 O -0.57 -7.46 12.36 -35.23 -0.44 -7.90 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.78 4.01 -51.93 -0.21 0.57 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.03 0.79 7.22 -51.93 -0.37 0.42 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.11 2.64 5.30 -51.93 -0.28 2.36 16 29 H 0.07 1.53 3.85 -51.93 -0.20 1.33 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.33 4.43 8.90 -39.29 -0.35 4.08 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 35 H 0.05 0.97 6.11 -51.93 -0.32 0.66 16 36 H 0.07 1.42 5.94 -51.93 -0.31 1.11 16 37 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 38 H 0.06 0.82 5.89 -51.93 -0.31 0.51 16 39 H 0.05 0.73 7.40 -51.93 -0.38 0.35 16 40 H 0.37 3.02 9.12 45.56 0.42 3.44 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -29.03 288.82 -7.26 -36.30 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.37 Total: 7.64 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.11 Total: -8.81 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.90 Total: -47.80 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.44 Total: -7.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.03 -7.26 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.472 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds