Wall clock time and date at job start Mon Mar 30 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47349 * 2 1 4 4 C 1.53010 * 109.47169 * 120.00021 * 2 1 3 5 5 C 1.50692 * 109.47186 * 185.00083 * 4 2 1 6 6 H 1.08002 * 120.00105 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00063 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00061 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99982 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47529 * 90.00006 * 9 7 5 11 11 H 1.48499 * 109.47067 * 329.99521 * 9 7 5 12 12 H 1.48507 * 109.47007 * 209.99916 * 9 7 5 13 13 N 1.46898 * 109.47345 * 239.99770 * 2 1 3 14 14 C 1.46963 * 110.99960 * 322.87999 * 13 2 1 15 15 C 1.53048 * 109.36415 * 183.18613 * 14 13 2 16 16 N 1.46955 * 109.36496 * 301.59596 * 15 14 13 17 17 C 1.46958 * 110.87922 * 59.31874 * 16 15 14 18 18 C 1.46955 * 110.99893 * 86.67541 * 13 2 1 19 19 C 1.53005 * 109.49054 * 296.78315 * 18 13 2 20 20 C 1.52993 * 109.48948 * 56.84370 * 18 13 2 21 21 O 1.42897 * 109.47600 * 174.39145 * 20 18 13 22 22 H 1.08994 * 109.47269 * 57.56632 * 1 2 3 23 23 H 1.09001 * 109.47204 * 177.57010 * 1 2 3 24 24 H 1.08999 * 109.47357 * 297.56254 * 1 2 3 25 25 H 1.08996 * 109.46983 * 64.99575 * 4 2 1 26 26 H 1.09004 * 109.46844 * 305.00191 * 4 2 1 27 27 H 0.96995 * 120.00364 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.48481 * 303.14966 * 14 13 2 29 29 H 1.09002 * 109.49023 * 63.21330 * 14 13 2 30 30 H 1.08997 * 109.49056 * 61.56036 * 15 14 13 31 31 H 1.09003 * 109.49157 * 181.60783 * 15 14 13 32 32 H 1.00903 * 111.00232 * 295.45781 * 16 15 14 33 33 H 1.09002 * 109.48686 * 60.65256 * 17 16 15 34 34 H 1.09000 * 109.48897 * 180.71032 * 17 16 15 35 35 H 1.08997 * 109.47493 * 72.57347 * 19 18 13 36 36 H 1.08994 * 109.47453 * 192.58364 * 19 18 13 37 37 H 1.09006 * 109.46636 * 312.57735 * 19 18 13 38 38 H 1.09001 * 109.47894 * 294.39470 * 20 18 13 39 39 H 1.09003 * 109.46998 * 54.39153 * 20 18 13 40 40 H 0.96703 * 114.00608 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1926 2.3584 8 7 5.5411 -1.1003 2.4135 9 14 3.3014 -2.1078 3.6959 10 1 3.1709 -3.5380 3.3181 11 1 1.9504 -1.5127 3.8561 12 1 4.0447 -2.0001 4.9771 13 7 2.0197 -0.6925 -1.1994 14 6 1.1639 -1.8402 -1.5312 15 6 1.7511 -2.5797 -2.7356 16 7 1.8516 -1.6551 -3.8734 17 6 2.7074 -0.5074 -3.5416 18 6 2.1203 0.2321 -2.3372 19 6 0.7283 0.7595 -2.6910 20 6 3.0307 1.4036 -1.9640 21 8 3.2334 2.2333 -3.1097 22 1 -0.3633 0.5511 -0.8673 23 1 -0.3634 -1.0267 -0.0436 24 1 -0.3634 0.4755 0.9110 25 1 1.7516 -1.7715 1.2057 26 1 1.6054 -0.2618 2.1370 27 1 6.0255 -1.5063 3.1493 28 1 1.1154 -2.5164 -0.6776 29 1 0.1613 -1.4881 -1.7740 30 1 2.7428 -2.9553 -2.4837 31 1 1.1026 -3.4146 -3.0014 32 1 0.9378 -1.3499 -4.1733 33 1 3.7100 -0.8595 -3.2988 34 1 2.7560 0.1688 -4.3952 35 1 0.4025 1.4660 -1.9275 36 1 0.7646 1.2607 -3.6581 37 1 0.0259 -0.0727 -2.7392 38 1 2.5646 1.9877 -1.1704 39 1 3.9910 1.0215 -1.6176 40 1 3.8028 2.9976 -2.9461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:37 Heat of formation + Delta-G solvation = -26.959880 kcal Electronic energy + Delta-G solvation = -19498.087560 eV Core-core repulsion = 16734.385755 eV Total energy + Delta-G solvation = -2763.701805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27454 -36.36297 -35.44649 -32.73075 -32.02022 -30.22261 -28.31009 -27.12313 -25.86229 -24.64197 -22.59501 -21.61905 -19.75768 -18.08283 -17.37713 -16.56856 -15.83851 -15.23374 -15.02530 -14.79605 -14.28910 -13.97435 -13.59605 -13.21323 -12.75358 -12.55529 -12.37717 -12.26635 -12.08069 -11.76976 -11.69119 -11.29423 -11.10854 -10.92499 -10.71694 -10.57810 -10.40532 -10.06195 -9.85644 -9.53799 -9.44690 -9.04550 -8.44407 -8.15168 -7.55342 -5.93621 -3.87483 3.34055 3.41680 3.43701 4.04667 4.48072 4.52283 4.79152 5.07996 5.17237 5.33145 5.41096 5.43855 5.47526 5.60377 5.65797 5.75962 5.82160 5.83196 5.85900 5.95275 6.03828 6.17702 6.22281 6.26222 6.36335 6.38389 6.47895 6.54593 6.78168 7.09886 7.18229 7.28981 7.58038 7.70200 7.77307 7.84927 7.93463 8.68619 9.15819 9.69695 11.20313 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.008354 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.812297 B = 3350.876425 C = 3575.970997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.088 3.912 3 H 0.075 0.925 4 C -0.002 4.002 5 C -0.488 4.488 6 H 0.076 0.924 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.492 5.492 14 C 0.018 3.982 15 C 0.056 3.944 16 N -0.687 5.687 17 C 0.079 3.921 18 C 0.078 3.922 19 C -0.179 4.179 20 C 0.089 3.911 21 O -0.577 6.577 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.011 0.989 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.331 0.669 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 2.888 -9.786 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.020 4.020 3 H 0.093 0.907 4 C -0.039 4.039 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.702 3.298 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.216 5.216 14 C -0.111 4.111 15 C -0.074 4.074 16 N -0.314 5.314 17 C -0.051 4.051 18 C -0.014 4.014 19 C -0.238 4.238 20 C 0.010 3.990 21 O -0.382 6.382 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.730 1.829 -10.174 13.530 hybrid contribution -1.473 0.657 1.772 2.397 sum -10.203 2.486 -8.402 13.448 Atomic orbital electron populations 1.22951 0.99318 1.01758 1.01742 1.21836 0.90341 0.98387 0.91388 0.90664 1.19605 0.97896 0.95050 0.91393 1.20994 0.89391 1.33935 1.08355 0.90635 1.24997 0.94659 0.96281 0.97842 1.69906 1.06379 1.46236 1.32310 0.86885 0.80323 0.80660 0.81932 1.20585 1.19420 1.21683 1.62322 1.50144 1.07133 1.01989 1.22873 0.94352 0.94181 0.99737 1.22139 1.02381 0.94684 0.88148 1.60817 1.17508 1.17538 1.35521 1.22015 0.97383 0.90759 0.94977 1.21618 0.93959 0.92457 0.93337 1.22695 0.98047 1.00942 1.02097 1.22224 0.99680 0.90647 0.86416 1.86341 1.73056 1.41717 1.37040 0.92343 0.92653 0.92803 0.97110 0.96632 0.93068 0.90036 0.94818 0.89767 0.91034 0.85197 0.90183 0.90162 0.91951 0.92210 0.92732 0.93437 0.91640 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.17 7.77 37.16 0.29 -2.88 16 2 C 0.09 1.68 1.78 -67.71 -0.12 1.56 16 3 H 0.08 1.48 5.37 -51.93 -0.28 1.20 16 4 C 0.00 -0.04 3.63 -27.88 -0.10 -0.14 16 5 C -0.49 -13.53 9.39 -34.45 -0.32 -13.86 16 6 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 N -0.49 -8.86 4.08 -210.95 -0.86 -9.72 16 14 C 0.02 0.29 3.96 -3.77 -0.01 0.27 16 15 C 0.06 0.82 6.72 -3.77 -0.03 0.80 16 16 N -0.69 -9.69 6.85 -113.64 -0.78 -10.47 16 17 C 0.08 1.21 5.22 -3.77 -0.02 1.19 16 18 C 0.08 1.23 0.52 -131.55 -0.07 1.16 16 19 C -0.18 -2.47 5.96 37.16 0.22 -2.25 16 20 C 0.09 1.42 5.53 37.15 0.21 1.63 16 21 O -0.58 -7.91 12.57 -35.23 -0.44 -8.35 16 22 H 0.06 0.83 4.33 -51.93 -0.22 0.61 16 23 H 0.05 0.86 6.28 -51.93 -0.33 0.53 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.01 0.25 6.60 -51.93 -0.34 -0.09 16 26 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.08 1.40 7.06 -51.93 -0.37 1.03 16 29 H 0.03 0.49 4.55 -51.93 -0.24 0.26 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.33 4.20 7.59 -39.29 -0.30 3.90 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.19 7.61 -51.93 -0.40 0.80 16 35 H 0.06 0.88 5.99 -51.93 -0.31 0.57 16 36 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.05 0.72 4.85 -51.93 -0.25 0.47 16 38 H 0.05 0.77 6.11 -51.93 -0.32 0.46 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.38 3.62 9.12 45.56 0.42 4.04 16 LS Contribution 289.36 15.07 4.36 4.36 Total: -1.00 -30.64 289.36 -7.10 -37.74 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.43 Total: 7.31 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.06 Total: -10.83 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.86 Total: -47.41 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.44 Total: -8.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.64 -7.10 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.780 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds