Wall clock time and date at job start Mon Mar 30 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47349 * 2 1 4 4 C 1.53010 * 109.47169 * 120.00021 * 2 1 3 5 5 C 1.50692 * 109.47186 * 185.00083 * 4 2 1 6 6 H 1.08002 * 120.00105 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00063 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00061 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99982 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47529 * 90.00006 * 9 7 5 11 11 H 1.48499 * 109.47067 * 329.99521 * 9 7 5 12 12 H 1.48507 * 109.47007 * 209.99916 * 9 7 5 13 13 N 1.46898 * 109.47345 * 239.99770 * 2 1 3 14 14 C 1.46963 * 110.99960 * 322.87999 * 13 2 1 15 15 C 1.53048 * 109.36415 * 183.18613 * 14 13 2 16 16 N 1.46955 * 109.36496 * 301.59596 * 15 14 13 17 17 C 1.46958 * 110.87922 * 59.31874 * 16 15 14 18 18 C 1.46955 * 110.99893 * 86.67541 * 13 2 1 19 19 C 1.53005 * 109.49054 * 296.78315 * 18 13 2 20 20 C 1.52993 * 109.48948 * 56.84370 * 18 13 2 21 21 O 1.42897 * 109.47600 * 174.39145 * 20 18 13 22 22 H 1.08994 * 109.47269 * 57.56632 * 1 2 3 23 23 H 1.09001 * 109.47204 * 177.57010 * 1 2 3 24 24 H 1.08999 * 109.47357 * 297.56254 * 1 2 3 25 25 H 1.08996 * 109.46983 * 64.99575 * 4 2 1 26 26 H 1.09004 * 109.46844 * 305.00191 * 4 2 1 27 27 H 0.96995 * 120.00364 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.48481 * 303.14966 * 14 13 2 29 29 H 1.09002 * 109.49023 * 63.21330 * 14 13 2 30 30 H 1.08997 * 109.49056 * 61.56036 * 15 14 13 31 31 H 1.09003 * 109.49157 * 181.60783 * 15 14 13 32 32 H 1.00903 * 111.00232 * 295.45781 * 16 15 14 33 33 H 1.09002 * 109.48686 * 60.65256 * 17 16 15 34 34 H 1.09000 * 109.48897 * 180.71032 * 17 16 15 35 35 H 1.08997 * 109.47493 * 72.57347 * 19 18 13 36 36 H 1.08994 * 109.47453 * 192.58364 * 19 18 13 37 37 H 1.09006 * 109.46636 * 312.57735 * 19 18 13 38 38 H 1.09001 * 109.47894 * 294.39470 * 20 18 13 39 39 H 1.09003 * 109.46998 * 54.39153 * 20 18 13 40 40 H 0.96703 * 114.00608 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1926 2.3584 8 7 5.5411 -1.1003 2.4135 9 14 3.3014 -2.1078 3.6959 10 1 3.1709 -3.5380 3.3181 11 1 1.9504 -1.5127 3.8561 12 1 4.0447 -2.0001 4.9771 13 7 2.0197 -0.6925 -1.1994 14 6 1.1639 -1.8402 -1.5312 15 6 1.7511 -2.5797 -2.7356 16 7 1.8516 -1.6551 -3.8734 17 6 2.7074 -0.5074 -3.5416 18 6 2.1203 0.2321 -2.3372 19 6 0.7283 0.7595 -2.6910 20 6 3.0307 1.4036 -1.9640 21 8 3.2334 2.2333 -3.1097 22 1 -0.3633 0.5511 -0.8673 23 1 -0.3634 -1.0267 -0.0436 24 1 -0.3634 0.4755 0.9110 25 1 1.7516 -1.7715 1.2057 26 1 1.6054 -0.2618 2.1370 27 1 6.0255 -1.5063 3.1493 28 1 1.1154 -2.5164 -0.6776 29 1 0.1613 -1.4881 -1.7740 30 1 2.7428 -2.9553 -2.4837 31 1 1.1026 -3.4146 -3.0014 32 1 0.9378 -1.3499 -4.1733 33 1 3.7100 -0.8595 -3.2988 34 1 2.7560 0.1688 -4.3952 35 1 0.4025 1.4660 -1.9275 36 1 0.7646 1.2607 -3.6581 37 1 0.0259 -0.0727 -2.7392 38 1 2.5646 1.9877 -1.1704 39 1 3.9910 1.0215 -1.6176 40 1 3.8028 2.9976 -2.9461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719163235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:36 Heat of formation + Delta-G solvation = -53.053595 kcal Electronic energy + Delta-G solvation = -19499.219069 eV Core-core repulsion = 16734.385755 eV Total energy + Delta-G solvation = -2764.833313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56987 -37.57409 -36.85688 -34.67489 -33.41388 -31.78134 -29.79921 -28.54847 -27.14132 -25.91699 -24.48136 -22.86682 -21.27729 -19.40847 -18.88051 -18.46088 -17.12642 -16.63223 -16.40274 -16.08638 -15.80540 -15.54152 -14.85513 -14.75699 -14.36161 -14.08899 -13.71612 -13.63586 -13.49543 -13.33648 -13.14378 -12.66746 -12.53885 -12.33835 -12.16731 -11.95834 -11.88757 -11.68434 -11.49475 -11.21693 -11.08092 -10.78263 -10.65018 -9.37110 -8.85658 -8.17449 -6.15461 1.35944 1.36870 1.47507 2.41224 2.78465 3.18609 3.29860 3.59420 3.82275 3.92384 4.11209 4.15523 4.24130 4.33298 4.42272 4.44174 4.58454 4.61885 4.62608 4.69985 4.81651 4.87525 4.96657 4.99611 5.07513 5.12072 5.13658 5.23216 5.24509 5.34316 5.54591 5.75570 5.96724 6.31895 6.42981 6.50633 6.55136 6.84162 6.91695 7.44978 8.99725 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.008354 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.812297 B = 3350.876425 C = 3575.970997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.093 3.907 3 H 0.064 0.936 4 C 0.001 3.999 5 C -0.484 4.484 6 H 0.037 0.963 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.249 1.249 12 H -0.290 1.290 13 N -0.522 5.522 14 C 0.019 3.981 15 C 0.061 3.939 16 N -0.681 5.681 17 C 0.086 3.914 18 C 0.078 3.922 19 C -0.168 4.168 20 C 0.098 3.902 21 O -0.574 6.574 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.011 0.989 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.346 0.654 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.026 0.974 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 2.705 -10.452 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.015 4.015 3 H 0.082 0.918 4 C -0.037 4.037 5 C -0.522 4.522 6 H 0.055 0.945 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.172 1.172 12 H -0.216 1.216 13 N -0.247 5.247 14 C -0.110 4.110 15 C -0.069 4.069 16 N -0.309 5.309 17 C -0.044 4.044 18 C -0.013 4.013 19 C -0.227 4.227 20 C 0.020 3.980 21 O -0.381 6.381 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.165 0.835 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.747 1.667 -10.862 16.086 hybrid contribution -0.438 0.780 1.886 2.088 sum -12.186 2.447 -8.976 15.331 Atomic orbital electron populations 1.22834 0.96211 1.02684 1.03048 1.21603 0.92698 0.97078 0.90168 0.91824 1.19551 0.94657 0.95619 0.93869 1.21267 0.91886 1.32280 1.06789 0.94479 1.25905 0.95453 0.97675 1.00734 1.70076 1.08351 1.48143 1.33506 0.85789 0.79697 0.79344 0.78490 1.19996 1.17240 1.21649 1.62164 1.51562 1.08353 1.02618 1.22906 0.95224 0.93240 0.99594 1.22101 1.01400 0.95449 0.87929 1.60757 1.18226 1.16884 1.35064 1.21864 0.96197 0.91226 0.95102 1.21620 0.95321 0.91870 0.92496 1.22570 0.96306 1.01284 1.02514 1.21976 0.97856 0.91190 0.87027 1.86300 1.73588 1.42327 1.35899 0.90247 0.91905 0.92301 0.97067 0.96481 0.93164 0.91497 0.92470 0.92617 0.88082 0.83531 0.93275 0.89236 0.91967 0.91219 0.91477 0.93816 0.95533 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.43 7.77 71.98 0.56 -4.87 16 2 C 0.09 3.44 1.78 44.92 0.08 3.52 16 3 H 0.06 2.49 5.37 -2.39 -0.01 2.48 16 4 C 0.00 0.03 3.63 29.85 0.11 0.14 16 5 C -0.48 -27.57 9.39 25.60 0.24 -27.33 16 6 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 7 C 0.00 -0.17 5.47 84.65 0.46 0.29 16 8 N -0.96 -61.16 13.96 21.45 0.30 -60.86 16 9 Si 0.94 45.24 27.47 68.60 1.88 47.12 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 N -0.52 -18.57 4.08 -821.30 -3.35 -21.92 16 14 C 0.02 0.58 3.96 86.31 0.34 0.92 16 15 C 0.06 1.69 6.72 86.31 0.58 2.27 16 16 N -0.68 -17.81 6.85 -513.45 -3.51 -21.32 16 17 C 0.09 2.59 5.22 86.31 0.45 3.04 16 18 C 0.08 2.40 0.52 3.53 0.00 2.40 16 19 C -0.17 -4.11 5.96 71.98 0.43 -3.68 16 20 C 0.10 3.21 5.53 71.98 0.40 3.61 16 21 O -0.57 -15.26 12.57 -148.98 -1.87 -17.13 16 22 H 0.08 1.95 4.33 -2.39 -0.01 1.94 16 23 H 0.06 1.71 6.28 -2.39 -0.01 1.70 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.01 0.51 6.60 -2.39 -0.02 0.50 16 26 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.07 2.19 7.06 -2.39 -0.02 2.18 16 29 H 0.06 1.45 4.55 -2.39 -0.01 1.43 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.35 7.53 7.59 -89.69 -0.68 6.85 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 2.52 7.61 -2.39 -0.02 2.50 16 35 H 0.06 1.54 5.99 -2.39 -0.01 1.53 16 36 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 37 H 0.07 1.48 4.85 -2.38 -0.01 1.46 16 38 H 0.04 1.45 6.11 -2.39 -0.01 1.43 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.40 7.28 9.12 -74.06 -0.68 6.60 16 Total: -1.00 -67.65 289.36 -3.26 -70.91 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.36 Total: 22.89 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.65 Total: -19.69 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -6.57 Total: -104.11 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.87 Total: -17.13 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -67.65 -3.26 -70.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.861 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds