Wall clock time and date at job start Mon Mar 30 2020 04:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.90844 * 2 1 4 4 C 1.54001 * 109.91656 * 238.90084 * 2 1 3 5 5 H 1.08996 * 110.30529 * 120.20670 * 4 2 1 6 6 N 1.46902 * 110.30642 * 358.13877 * 4 2 1 7 7 C 1.46906 * 110.99573 * 154.99995 * 6 4 2 8 8 C 1.52998 * 109.47020 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.47024 * 64.99964 * 8 7 6 10 10 C 1.42895 * 114.00010 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47575 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99318 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00352 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99801 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47226 * 90.00296 * 15 13 11 17 17 H 1.48496 * 109.47140 * 209.99774 * 15 13 11 18 18 H 1.48497 * 109.47418 * 330.00071 * 15 13 11 19 19 C 1.54598 * 105.13920 * 239.22464 * 4 2 1 20 20 C 1.54936 * 102.92131 * 338.04200 * 19 4 2 21 21 N 1.47896 * 110.08327 * 121.21260 * 2 1 3 22 22 C 1.46899 * 111.00203 * 265.28915 * 21 2 1 23 23 H 1.09003 * 109.47034 * 181.09812 * 1 2 3 24 24 H 1.08999 * 109.47184 * 301.09643 * 1 2 3 25 25 H 1.09004 * 109.47610 * 61.09944 * 1 2 3 26 26 H 1.00896 * 111.00219 * 278.95635 * 6 4 2 27 27 H 1.09002 * 109.46991 * 299.99841 * 7 6 4 28 28 H 1.09000 * 109.47202 * 60.00133 * 7 6 4 29 29 H 1.08999 * 109.47322 * 185.00065 * 8 7 6 30 30 H 1.09001 * 109.47293 * 305.00104 * 8 7 6 31 31 H 1.09005 * 109.47322 * 300.00292 * 10 9 8 32 32 H 1.09002 * 109.47410 * 59.99743 * 10 9 8 33 33 H 0.97002 * 119.99491 * 180.02562 * 14 13 11 34 34 H 1.08999 * 110.72226 * 96.40023 * 19 4 2 35 35 H 1.08995 * 110.71935 * 219.68383 * 19 4 2 36 36 H 1.09002 * 110.66852 * 278.98438 * 20 19 4 37 37 H 1.08995 * 110.81305 * 155.91496 * 20 19 4 38 38 H 1.09006 * 109.46837 * 60.00010 * 22 21 2 39 39 H 1.08992 * 109.47463 * 179.97438 * 22 21 2 40 40 H 1.08998 * 109.47023 * 300.00347 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0546 -0.7479 -1.2398 5 1 2.6670 -0.0846 -1.8506 6 7 0.9336 -1.2761 -2.0288 7 6 1.3167 -1.4508 -3.4362 8 6 0.1266 -2.0018 -4.2241 9 8 -0.9255 -1.0347 -4.2359 10 6 -2.0905 -1.4521 -4.9504 11 6 -3.1292 -0.3614 -4.8988 12 1 -2.9203 0.5587 -4.3732 13 6 -4.3457 -0.5377 -5.5233 14 7 -4.5998 -1.6579 -6.1637 15 14 -5.6328 0.8146 -5.4598 16 1 -5.4508 1.7260 -6.6181 17 1 -6.9883 0.2107 -5.5135 18 1 -5.4825 1.5822 -4.1975 19 6 2.9100 -1.9075 -0.6798 20 6 3.2733 -1.4142 0.7433 21 7 2.0378 -0.7198 1.1880 22 6 2.3244 0.2129 2.2861 23 1 -0.3633 -1.0275 0.0197 24 1 -0.3633 0.5308 0.8800 25 1 -0.3634 0.4967 -0.8997 26 1 0.5914 -2.1406 -1.6371 27 1 1.6154 -0.4892 -3.8535 28 1 2.1503 -2.1501 -3.5017 29 1 0.4356 -2.2150 -5.2474 30 1 -0.2279 -2.9186 -3.7531 31 1 -1.8272 -1.6536 -5.9888 32 1 -2.4912 -2.3577 -4.4949 33 1 -5.4556 -1.7818 -6.6034 34 1 2.3281 -2.8279 -0.6322 35 1 3.8087 -2.0486 -1.2803 36 1 4.1129 -0.7200 0.7072 37 1 3.4990 -2.2552 1.3988 38 1 1.4116 0.7414 2.5614 39 1 2.6959 -0.3426 3.1471 40 1 3.0777 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719642185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:43 Heat of formation + Delta-G solvation = -40.184832 kcal Electronic energy + Delta-G solvation = -17824.940767 eV Core-core repulsion = 15060.665485 eV Total energy + Delta-G solvation = -2764.275282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56912 -36.89941 -35.04557 -32.66534 -31.33933 -31.09442 -28.09592 -26.54082 -24.90713 -24.82117 -22.25841 -21.54389 -21.37325 -19.49055 -16.58232 -16.20793 -15.76456 -15.59903 -14.95799 -14.77947 -14.43449 -14.03192 -13.80145 -13.48418 -13.11345 -12.76380 -12.52211 -12.22368 -12.13822 -11.74941 -11.50055 -11.43439 -11.15666 -10.98614 -10.79174 -10.76730 -10.73950 -10.60617 -10.33052 -9.91709 -9.02582 -8.74454 -8.53563 -8.11076 -8.05338 -6.04750 -4.05452 3.34840 3.39625 3.45839 3.88596 4.25024 4.40928 4.54640 4.63251 4.91840 5.02920 5.16268 5.16914 5.27707 5.31897 5.37415 5.49578 5.55483 5.61968 5.69936 5.71057 5.76770 5.87379 5.91878 6.05616 6.14093 6.24136 6.29805 6.35358 6.82333 6.88071 6.99090 7.17058 7.27940 7.50454 7.61541 7.87309 8.23667 8.68629 9.09415 9.59274 11.07022 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.004479 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.304053 B = 6249.739044 C = 6913.229853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.069 3.931 3 H 0.049 0.951 4 C 0.082 3.918 5 H 0.080 0.920 6 N -0.660 5.660 7 C 0.064 3.936 8 C 0.065 3.935 9 O -0.380 6.380 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.154 4.154 20 C 0.037 3.963 21 N -0.520 5.520 22 C 0.018 3.982 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.344 0.656 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.001 0.999 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.224 0.138 12.471 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.029 4.029 5 H 0.098 0.902 6 N -0.291 5.291 7 C -0.065 4.065 8 C -0.013 4.013 9 O -0.299 6.299 10 C 0.119 3.881 11 C -0.548 4.548 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.734 3.266 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.194 4.194 20 C -0.091 4.091 21 N -0.244 5.244 22 C -0.131 4.131 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.163 0.837 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.397 0.491 12.539 19.863 hybrid contribution 0.511 0.082 -0.394 0.650 sum 15.908 0.572 12.145 20.022 Atomic orbital electron populations 1.21424 0.92100 1.02605 1.00907 1.22474 0.98052 0.95043 0.88339 0.93308 1.22416 0.90851 0.95475 0.94180 0.90150 1.60464 1.32174 1.35062 1.01416 1.22012 0.95219 1.00639 0.88587 1.22221 0.89384 0.92434 0.97245 1.87952 1.25276 1.40435 1.76243 1.20177 0.81779 0.95920 0.90202 1.21069 0.98110 1.02197 1.33388 0.91511 1.24943 0.98248 0.96173 0.95206 1.69970 1.23967 1.25007 1.35110 0.86351 0.80174 0.81439 0.78623 1.20563 1.21158 1.19580 1.23282 1.00606 0.99568 0.95928 1.23136 0.91567 0.98369 0.96072 1.64737 1.25672 1.26933 1.07085 1.22485 1.00612 0.95167 0.94826 0.92078 0.94592 0.90529 0.83675 0.90548 0.95005 0.94325 0.94819 0.98096 0.97891 0.92772 0.90538 0.91275 0.94010 0.90329 0.91224 0.91594 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.54 37.16 0.32 -1.29 16 2 C 0.07 0.86 3.08 -66.64 -0.21 0.66 16 3 H 0.05 0.60 7.73 -51.93 -0.40 0.20 16 4 C 0.08 0.99 3.29 -66.35 -0.22 0.77 16 5 H 0.08 0.95 7.82 -51.93 -0.41 0.55 16 6 N -0.66 -9.53 4.42 -105.28 -0.46 -9.99 16 7 C 0.06 0.95 5.92 -3.82 -0.02 0.93 16 8 C 0.07 1.21 6.22 37.16 0.23 1.44 16 9 O -0.38 -9.30 10.27 -35.23 -0.36 -9.66 16 10 C 0.19 5.42 5.69 36.01 0.20 5.62 16 11 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 12 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 15 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.15 -1.54 6.72 -24.87 -0.17 -1.71 16 20 C 0.04 0.36 6.56 -1.90 -0.01 0.34 16 21 N -0.52 -5.89 5.19 -230.79 -1.20 -7.08 16 22 C 0.02 0.17 9.40 60.06 0.56 0.73 16 23 H 0.06 0.92 7.50 -51.93 -0.39 0.53 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 26 H 0.34 4.88 7.71 -39.29 -0.30 4.58 16 27 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.37 7.96 -51.93 -0.41 -0.04 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.22 8.00 -51.93 -0.42 -0.20 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -31.39 322.09 -8.51 -39.89 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.32 Total: -1.97 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 0.27 Total: -6.60 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.93 Total: -43.73 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.36 Total: -9.66 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.39 -8.51 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719642185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.291 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds