Wall clock time and date at job start Mon Mar 30 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.90844 * 2 1 4 4 C 1.54001 * 109.91656 * 238.90084 * 2 1 3 5 5 H 1.08996 * 110.30529 * 120.20670 * 4 2 1 6 6 N 1.46902 * 110.30642 * 358.13877 * 4 2 1 7 7 C 1.46906 * 110.99573 * 154.99995 * 6 4 2 8 8 C 1.52998 * 109.47020 * 179.97438 * 7 6 4 9 9 O 1.42906 * 109.47024 * 64.99964 * 8 7 6 10 10 C 1.42895 * 114.00010 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47575 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99318 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00352 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99801 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47226 * 90.00296 * 15 13 11 17 17 H 1.48496 * 109.47140 * 209.99774 * 15 13 11 18 18 H 1.48497 * 109.47418 * 330.00071 * 15 13 11 19 19 C 1.54598 * 105.13920 * 239.22464 * 4 2 1 20 20 C 1.54936 * 102.92131 * 338.04200 * 19 4 2 21 21 N 1.47896 * 110.08327 * 121.21260 * 2 1 3 22 22 C 1.46899 * 111.00203 * 265.28915 * 21 2 1 23 23 H 1.09003 * 109.47034 * 181.09812 * 1 2 3 24 24 H 1.08999 * 109.47184 * 301.09643 * 1 2 3 25 25 H 1.09004 * 109.47610 * 61.09944 * 1 2 3 26 26 H 1.00896 * 111.00219 * 278.95635 * 6 4 2 27 27 H 1.09002 * 109.46991 * 299.99841 * 7 6 4 28 28 H 1.09000 * 109.47202 * 60.00133 * 7 6 4 29 29 H 1.08999 * 109.47322 * 185.00065 * 8 7 6 30 30 H 1.09001 * 109.47293 * 305.00104 * 8 7 6 31 31 H 1.09005 * 109.47322 * 300.00292 * 10 9 8 32 32 H 1.09002 * 109.47410 * 59.99743 * 10 9 8 33 33 H 0.97002 * 119.99491 * 180.02562 * 14 13 11 34 34 H 1.08999 * 110.72226 * 96.40023 * 19 4 2 35 35 H 1.08995 * 110.71935 * 219.68383 * 19 4 2 36 36 H 1.09002 * 110.66852 * 278.98438 * 20 19 4 37 37 H 1.08995 * 110.81305 * 155.91496 * 20 19 4 38 38 H 1.09006 * 109.46837 * 60.00010 * 22 21 2 39 39 H 1.08992 * 109.47463 * 179.97438 * 22 21 2 40 40 H 1.08998 * 109.47023 * 300.00347 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0546 -0.7479 -1.2398 5 1 2.6670 -0.0846 -1.8506 6 7 0.9336 -1.2761 -2.0288 7 6 1.3167 -1.4508 -3.4362 8 6 0.1266 -2.0018 -4.2241 9 8 -0.9255 -1.0347 -4.2359 10 6 -2.0905 -1.4521 -4.9504 11 6 -3.1292 -0.3614 -4.8988 12 1 -2.9203 0.5587 -4.3732 13 6 -4.3457 -0.5377 -5.5233 14 7 -4.5998 -1.6579 -6.1637 15 14 -5.6328 0.8146 -5.4598 16 1 -5.4508 1.7260 -6.6181 17 1 -6.9883 0.2107 -5.5135 18 1 -5.4825 1.5822 -4.1975 19 6 2.9100 -1.9075 -0.6798 20 6 3.2733 -1.4142 0.7433 21 7 2.0378 -0.7198 1.1880 22 6 2.3244 0.2129 2.2861 23 1 -0.3633 -1.0275 0.0197 24 1 -0.3633 0.5308 0.8800 25 1 -0.3634 0.4967 -0.8997 26 1 0.5914 -2.1406 -1.6371 27 1 1.6154 -0.4892 -3.8535 28 1 2.1503 -2.1501 -3.5017 29 1 0.4356 -2.2150 -5.2474 30 1 -0.2279 -2.9186 -3.7531 31 1 -1.8272 -1.6536 -5.9888 32 1 -2.4912 -2.3577 -4.4949 33 1 -5.4556 -1.7818 -6.6034 34 1 2.3281 -2.8279 -0.6322 35 1 3.8087 -2.0486 -1.2803 36 1 4.1129 -0.7200 0.7072 37 1 3.4990 -2.2552 1.3988 38 1 1.4116 0.7414 2.5614 39 1 2.6959 -0.3426 3.1471 40 1 3.0777 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719642185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:42 Heat of formation + Delta-G solvation = -62.819195 kcal Electronic energy + Delta-G solvation = -17825.922266 eV Core-core repulsion = 15060.665485 eV Total energy + Delta-G solvation = -2765.256781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49120 -38.62338 -36.29768 -34.84099 -32.32646 -32.19181 -29.77062 -28.28546 -25.87513 -25.75227 -24.45439 -22.91840 -22.19339 -20.47220 -18.62249 -17.58331 -17.24738 -16.86413 -16.36827 -16.20941 -15.78318 -15.26368 -15.08212 -14.74866 -14.53400 -13.94696 -13.69462 -13.47624 -13.35901 -13.20769 -12.85946 -12.80238 -12.51844 -12.48580 -12.26946 -12.20412 -11.97465 -11.86654 -11.66989 -11.43730 -11.23112 -10.83878 -10.16007 -9.36955 -9.14903 -8.30004 -6.41619 1.40721 1.43681 1.56032 2.36844 3.03734 3.03877 3.19268 3.29488 3.69624 3.76439 4.15785 4.25168 4.28646 4.30353 4.39396 4.52983 4.56245 4.59577 4.64461 4.70534 4.79937 4.85167 4.90985 4.93902 5.00720 5.03158 5.10669 5.14227 5.20668 5.22320 5.57923 5.65053 5.97353 6.00130 6.12312 6.23031 6.49689 6.60817 6.89491 7.30725 8.82462 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.004479 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.304053 B = 6249.739044 C = 6913.229853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.072 3.928 3 H 0.050 0.950 4 C 0.083 3.917 5 H 0.084 0.916 6 N -0.680 5.680 7 C 0.077 3.923 8 C 0.055 3.945 9 O -0.395 6.395 10 C 0.209 3.791 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.146 4.146 20 C 0.039 3.961 21 N -0.534 5.534 22 C 0.017 3.983 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.343 0.657 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.037 0.963 31 H -0.017 1.017 32 H -0.017 1.017 33 H 0.270 0.730 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.174 0.648 13.224 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.037 4.037 3 H 0.068 0.932 4 C -0.028 4.028 5 H 0.102 0.898 6 N -0.312 5.312 7 C -0.052 4.052 8 C -0.022 4.022 9 O -0.315 6.315 10 C 0.134 3.866 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.805 3.195 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.186 4.186 20 C -0.089 4.089 21 N -0.259 5.259 22 C -0.131 4.131 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.162 0.838 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.001 0.999 32 H 0.000 1.000 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.381 0.991 13.302 21.124 hybrid contribution 0.277 -0.136 -0.597 0.672 sum 16.658 0.855 12.704 20.967 Atomic orbital electron populations 1.21279 0.93959 1.01303 0.99656 1.22375 0.96507 0.95478 0.89372 0.93159 1.22433 0.90392 0.96279 0.93741 0.89764 1.60405 1.33906 1.35302 1.01557 1.21885 0.94067 1.01012 0.88217 1.22596 0.89055 0.91904 0.98686 1.87910 1.25479 1.42424 1.75651 1.19784 0.82944 0.94682 0.89232 1.21385 0.99639 1.02616 1.34592 0.92228 1.25943 1.00323 0.98856 0.94067 1.70073 1.24933 1.26907 1.35233 0.85200 0.77097 0.78125 0.79098 1.19236 1.19877 1.18991 1.23215 1.00699 0.98293 0.96352 1.23187 0.91097 0.98736 0.95862 1.64689 1.26994 1.27344 1.06902 1.22521 1.00684 0.95233 0.94658 0.93400 0.94128 0.93327 0.83770 0.91071 0.91442 0.93550 0.94431 0.99936 0.99968 0.92104 0.91013 0.89502 0.92880 0.89267 0.91719 0.90257 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.01 8.54 71.98 0.61 -2.39 16 2 C 0.07 1.71 3.08 45.06 0.14 1.85 16 3 H 0.05 1.18 7.73 -2.39 -0.02 1.16 16 4 C 0.08 1.87 3.29 45.80 0.15 2.02 16 5 H 0.08 1.84 7.82 -2.39 -0.02 1.82 16 6 N -0.68 -19.28 4.42 -487.01 -2.15 -21.43 16 7 C 0.08 2.18 5.92 86.30 0.51 2.69 16 8 C 0.05 2.04 6.22 71.98 0.45 2.49 16 9 O -0.40 -19.84 10.27 -148.98 -1.53 -21.37 16 10 C 0.21 12.09 5.69 71.24 0.41 12.50 16 11 C -0.54 -33.42 9.43 25.60 0.24 -33.18 16 12 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 15 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C -0.15 -2.57 6.72 31.80 0.21 -2.35 16 20 C 0.04 0.65 6.56 86.65 0.57 1.22 16 21 N -0.53 -11.20 5.19 -884.08 -4.59 -15.79 16 22 C 0.02 0.30 9.40 127.69 1.20 1.50 16 23 H 0.05 1.48 7.50 -2.39 -0.02 1.46 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.66 7.86 -2.39 -0.02 1.64 16 26 H 0.34 9.65 7.71 -89.70 -0.69 8.96 16 27 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H -0.02 -1.03 8.14 -2.38 -0.02 -1.04 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.07 1.35 7.56 -2.39 -0.02 1.33 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 0.78 7.96 -2.39 -0.02 0.76 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 0.50 8.00 -2.39 -0.02 0.48 16 Total: -1.00 -67.81 322.09 -0.71 -68.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.29 Total: 12.27 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.95 Total: -12.83 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -6.46 Total: -94.04 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.53 Total: -21.37 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.81 -0.71 -68.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719642185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -67.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds