Wall clock time and date at job start Mon Mar 30 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.59792 * 2 1 4 4 C 1.54943 * 110.66156 * 237.00117 * 2 1 3 5 5 H 1.08997 * 110.72276 * 322.33848 * 4 2 1 6 6 N 1.46893 * 110.87928 * 85.55329 * 4 2 1 7 7 C 1.46895 * 111.00283 * 200.04100 * 6 4 2 8 8 C 1.52999 * 109.47358 * 180.02562 * 7 6 4 9 9 O 1.42894 * 109.47221 * 64.99742 * 8 7 6 10 10 C 1.42904 * 113.99889 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46999 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00048 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99721 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00267 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46873 * 59.99783 * 15 13 11 17 17 H 1.48495 * 109.47447 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46900 * 300.00055 * 15 13 11 19 19 C 1.54593 * 102.91873 * 203.98694 * 4 2 1 20 20 C 1.53997 * 105.14126 * 21.95438 * 19 4 2 21 21 N 1.47906 * 107.05871 * 1.22735 * 20 19 4 22 22 C 1.46896 * 111.00163 * 214.15425 * 21 20 19 23 23 H 1.08993 * 109.47492 * 183.00162 * 1 2 3 24 24 H 1.09003 * 109.46853 * 303.00107 * 1 2 3 25 25 H 1.09001 * 109.46976 * 62.99574 * 1 2 3 26 26 H 1.00904 * 111.00123 * 324.00041 * 6 4 2 27 27 H 1.09004 * 109.47179 * 300.00163 * 7 6 4 28 28 H 1.08993 * 109.47177 * 60.00120 * 7 6 4 29 29 H 1.09001 * 109.47414 * 185.00367 * 8 7 6 30 30 H 1.09007 * 109.46812 * 304.99879 * 8 7 6 31 31 H 1.09003 * 109.47437 * 299.99845 * 10 9 8 32 32 H 1.08998 * 109.47314 * 60.00405 * 10 9 8 33 33 H 0.96991 * 119.99756 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.30819 * 263.04149 * 19 4 2 35 35 H 1.08998 * 110.39751 * 140.91741 * 19 4 2 36 36 H 1.08998 * 109.91454 * 120.57744 * 20 19 4 37 37 H 1.09004 * 109.92077 * 241.87416 * 20 19 4 38 38 H 1.09003 * 109.46989 * 59.87227 * 22 21 20 39 39 H 1.08997 * 109.46939 * 179.87406 * 22 21 20 40 40 H 1.08997 * 109.47220 * 299.87787 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 6 2.0768 -0.7896 -1.2159 5 1 1.4577 -1.6636 -1.4181 6 7 2.1619 0.0708 -2.4034 7 6 2.2121 -0.7319 -3.6326 8 6 2.3008 0.1969 -4.8452 9 8 3.5382 0.9106 -4.8089 10 6 3.7219 1.8115 -5.9030 11 6 5.0523 2.5057 -5.7642 12 1 5.6932 2.2817 -4.9243 13 6 5.4508 3.4276 -6.7089 14 7 4.6695 3.7014 -7.7309 15 14 7.0995 4.2886 -6.5365 16 1 8.1880 3.2785 -6.5393 17 1 7.2904 5.2246 -7.6734 18 1 7.1309 5.0466 -5.2599 19 6 3.4868 -1.2149 -0.7461 20 6 3.4317 -1.1610 0.7919 21 7 2.0577 -0.7584 1.1630 22 6 2.0614 0.0716 2.3749 23 1 -0.3634 -1.0262 0.0538 24 1 -0.3633 0.5597 0.8619 25 1 -0.3633 0.4666 -0.9156 26 1 1.3954 0.7264 -2.4307 27 1 3.0877 -1.3806 -3.6075 28 1 1.3110 -1.3407 -3.7061 29 1 2.2485 -0.3935 -5.7599 30 1 1.4722 0.9049 -4.8219 31 1 3.6990 1.2548 -6.8399 32 1 2.9229 2.5529 -5.9012 33 1 4.9497 4.3502 -8.3952 34 1 4.2368 -0.5191 -1.1224 35 1 3.7095 -2.2278 -1.0814 36 1 3.6552 -2.1441 1.2061 37 1 4.1468 -0.4271 1.1637 38 1 2.6550 0.9687 2.1990 39 1 1.0390 0.3554 2.6240 40 1 2.4932 -0.4935 3.2010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719642186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:45 Heat of formation + Delta-G solvation = -70.396046 kcal Electronic energy + Delta-G solvation = -17687.974925 eV Core-core repulsion = 14922.389587 eV Total energy + Delta-G solvation = -2765.585338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41042 -38.66720 -36.34208 -34.85386 -32.42004 -32.34578 -29.90076 -28.42790 -25.98843 -25.67516 -24.46948 -23.08477 -21.31139 -21.13853 -18.62188 -17.64322 -17.39317 -16.57861 -16.47582 -16.33341 -15.90574 -15.28243 -15.08083 -14.90167 -14.61298 -14.08108 -14.01690 -13.53254 -13.32384 -13.12797 -12.95450 -12.78720 -12.63848 -12.37230 -12.31116 -12.23312 -12.11723 -11.90065 -11.69179 -11.37529 -11.26362 -10.85123 -10.18334 -9.46962 -9.31127 -8.31409 -6.43393 1.39512 1.44452 1.52874 2.35396 2.82686 3.02195 3.23605 3.35464 3.57865 3.75941 4.12672 4.21896 4.24806 4.27620 4.36747 4.45162 4.51295 4.54980 4.59033 4.65960 4.81125 4.83161 4.85773 4.86243 4.96241 5.00438 5.06123 5.13389 5.19690 5.21651 5.32501 5.55784 5.81540 5.98193 6.04097 6.17640 6.45745 6.58408 6.87119 7.28876 8.80834 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.004331 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.705481 B = 6464.139823 C = 6910.900899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 H 0.047 0.953 4 C 0.091 3.909 5 H 0.063 0.937 6 N -0.688 5.688 7 C 0.078 3.922 8 C 0.055 3.945 9 O -0.397 6.397 10 C 0.209 3.791 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.267 1.267 19 C -0.126 4.126 20 C 0.040 3.960 21 N -0.522 5.522 22 C 0.015 3.985 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.343 0.657 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.040 0.960 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.271 0.729 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 -9.585 16.826 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.065 0.935 4 C -0.019 4.019 5 H 0.081 0.919 6 N -0.321 5.321 7 C -0.051 4.051 8 C -0.022 4.022 9 O -0.317 6.317 10 C 0.133 3.867 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.571 5.571 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.165 4.165 20 C -0.088 4.088 21 N -0.247 5.247 22 C -0.133 4.133 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.162 0.838 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.002 0.998 32 H 0.001 0.999 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.362 -9.889 16.979 20.983 hybrid contribution 0.118 1.055 -0.785 1.321 sum -7.244 -8.834 16.193 19.818 Atomic orbital electron populations 1.21667 0.92380 1.02699 1.02175 1.22854 0.96765 0.95470 0.89783 0.93488 1.22418 0.95935 0.94493 0.89081 0.91914 1.60336 1.51461 1.18908 1.01383 1.21894 1.01422 0.94152 0.87662 1.22599 0.87167 0.94538 0.97941 1.87909 1.37789 1.57672 1.48284 1.19795 0.95717 0.86924 0.84230 1.21357 1.03560 1.23740 1.09848 0.92301 1.25946 1.02193 0.96887 0.94097 1.70063 1.39190 1.34765 1.13045 0.85251 0.77936 0.78166 0.78163 1.19030 1.19822 1.19149 1.22458 0.97338 1.01735 0.94940 1.22850 0.89547 1.01530 0.94881 1.64735 1.18910 1.37701 1.03356 1.22574 1.02500 0.95527 0.92724 0.91623 0.91777 0.91827 0.83777 0.91151 0.91288 0.93362 0.94147 0.99835 0.99852 0.92046 0.92374 0.90708 0.89154 0.93899 0.95895 0.90383 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.45 71.98 0.68 -1.63 16 2 C 0.06 1.31 2.35 45.27 0.11 1.42 16 3 H 0.05 1.20 7.96 -2.39 -0.02 1.18 16 4 C 0.09 2.19 2.78 46.12 0.13 2.31 16 5 H 0.06 1.41 7.81 -2.39 -0.02 1.39 16 6 N -0.69 -19.97 6.26 -485.40 -3.04 -23.00 16 7 C 0.08 2.26 5.92 86.30 0.51 2.77 16 8 C 0.05 2.05 6.22 71.98 0.45 2.49 16 9 O -0.40 -20.02 10.27 -148.98 -1.53 -21.55 16 10 C 0.21 12.06 5.69 71.24 0.41 12.47 16 11 C -0.55 -33.57 9.43 25.60 0.24 -33.33 16 12 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 15 Si 0.98 45.24 29.54 68.60 2.03 47.27 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.13 -3.10 6.60 31.47 0.21 -2.90 16 20 C 0.04 0.84 6.70 86.45 0.58 1.42 16 21 N -0.52 -10.79 5.25 -884.23 -4.64 -15.43 16 22 C 0.02 0.26 9.30 127.69 1.19 1.45 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 25 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16 26 H 0.34 9.35 8.26 -89.69 -0.74 8.61 16 27 H 0.07 2.16 8.13 -2.39 -0.02 2.15 16 28 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 34 H 0.06 1.76 8.05 -2.38 -0.02 1.74 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 0.92 7.73 -2.38 -0.02 0.90 16 38 H 0.02 0.42 8.00 -2.39 -0.02 0.40 16 39 H 0.08 1.16 7.59 -2.39 -0.02 1.15 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.86 324.27 -1.70 -69.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.24 Total: 12.40 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.96 Total: -12.64 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -7.40 Total: -95.04 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.53 Total: -21.55 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.86 -1.70 -69.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719642186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.840 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds