Wall clock time and date at job start Mon Mar 30 2020 04:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 110.06909 * 2 1 4 4 C 1.54000 * 109.91328 * 121.20316 * 2 1 3 5 5 H 1.09000 * 110.30609 * 239.59108 * 4 2 1 6 6 N 1.46892 * 110.31006 * 1.65953 * 4 2 1 7 7 C 1.46897 * 111.00111 * 195.23762 * 6 4 2 8 8 C 1.53003 * 109.47323 * 180.02562 * 7 6 4 9 9 O 1.42891 * 109.47467 * 64.99718 * 8 7 6 10 10 C 1.42899 * 114.00537 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47566 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99661 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99837 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48489 * 109.47101 * 89.99699 * 15 13 11 17 17 H 1.48501 * 109.46954 * 210.00100 * 15 13 11 18 18 H 1.48498 * 109.46787 * 329.99657 * 15 13 11 19 19 C 1.54591 * 105.13951 * 120.57911 * 4 2 1 20 20 C 1.54935 * 102.92482 * 21.95508 * 19 4 2 21 21 N 1.47894 * 109.91937 * 238.78898 * 2 1 3 22 22 C 1.46901 * 111.00175 * 94.80656 * 21 2 1 23 23 H 1.08999 * 109.47720 * 304.97469 * 1 2 3 24 24 H 1.09007 * 109.47391 * 64.97370 * 1 2 3 25 25 H 1.09004 * 109.47585 * 184.97431 * 1 2 3 26 26 H 1.00897 * 111.00051 * 319.19209 * 6 4 2 27 27 H 1.09000 * 109.47200 * 60.00037 * 7 6 4 28 28 H 1.09006 * 109.47129 * 299.99799 * 7 6 4 29 29 H 1.09000 * 109.47003 * 185.00046 * 8 7 6 30 30 H 1.08997 * 109.47101 * 304.99553 * 8 7 6 31 31 H 1.08998 * 109.47173 * 299.99914 * 10 9 8 32 32 H 1.09006 * 109.47117 * 59.99722 * 10 9 8 33 33 H 0.96998 * 119.99840 * 180.02562 * 14 13 11 34 34 H 1.09001 * 110.72614 * 140.31375 * 19 4 2 35 35 H 1.09003 * 110.72311 * 263.59892 * 19 4 2 36 36 H 1.09003 * 110.66989 * 204.15459 * 20 19 4 37 37 H 1.08999 * 110.81122 * 81.08419 * 20 19 4 38 38 H 1.09005 * 109.46947 * 59.99662 * 22 21 2 39 39 H 1.08995 * 109.47301 * 180.02562 * 22 21 2 40 40 H 1.09004 * 109.46818 * 300.00647 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0237 0.0000 4 6 2.0544 -0.7501 1.2385 5 1 2.6698 -0.0890 1.8487 6 7 0.9334 -1.2756 2.0290 7 6 1.3761 -1.6697 3.3731 8 6 0.1839 -2.2113 4.1644 9 8 -0.2865 -3.4143 3.5535 10 6 -1.4052 -4.0049 4.2181 11 6 -1.8147 -5.2609 3.4929 12 1 -1.2744 -5.5767 2.6128 13 6 -2.8792 -6.0067 3.9531 14 7 -3.5374 -5.6217 5.0246 15 14 -3.3864 -7.5639 3.0546 16 1 -2.6504 -8.7233 3.6194 17 1 -4.8468 -7.7768 3.2190 18 1 -3.0653 -7.4292 1.6110 19 6 2.9057 -1.9117 0.6764 20 6 3.2680 -1.4186 -0.7470 21 7 2.0338 -0.7205 -1.1892 22 6 2.3212 0.2121 -2.2872 23 1 -0.3634 0.5890 0.8420 24 1 -0.3634 0.4348 -0.9312 25 1 -0.3634 -1.0238 0.0891 26 1 0.1804 -0.6059 2.0782 27 1 1.7907 -0.8029 3.8878 28 1 2.1395 -2.4435 3.2919 29 1 0.4925 -2.4205 5.1887 30 1 -0.6153 -1.4701 4.1700 31 1 -1.1300 -4.2513 5.2436 32 1 -2.2373 -3.3008 4.2244 33 1 -4.2860 -6.1466 5.3486 34 1 3.8050 -2.0558 1.2752 35 1 2.3212 -2.8305 0.6291 36 1 3.4887 -2.2618 -1.4017 37 1 4.1103 -0.7275 -0.7147 38 1 3.0772 0.9289 -1.9666 39 1 2.6897 -0.3440 -3.1492 40 1 1.4095 0.7434 -2.5606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719642187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:49 Heat of formation + Delta-G solvation = -36.275765 kcal Electronic energy + Delta-G solvation = -17860.143627 eV Core-core repulsion = 15096.037855 eV Total energy + Delta-G solvation = -2764.105772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56471 -36.89053 -35.05655 -32.65258 -31.46025 -31.14260 -28.06880 -26.52412 -25.04221 -24.90721 -22.25388 -21.74706 -20.86410 -19.41090 -16.46345 -16.25285 -15.88269 -15.62293 -15.16612 -14.80202 -14.55394 -14.16569 -13.82160 -13.36908 -13.11508 -12.75857 -12.45169 -12.20587 -12.00439 -11.74704 -11.41884 -11.24228 -11.22657 -11.11790 -10.89056 -10.74870 -10.72185 -10.56757 -10.33718 -9.90708 -9.01157 -8.73125 -8.53836 -8.11886 -8.05161 -6.03519 -4.04082 3.36156 3.40785 3.47511 3.87162 4.28081 4.42289 4.49366 4.73950 4.95033 5.07017 5.14571 5.20808 5.27841 5.33130 5.35650 5.47479 5.58212 5.63383 5.69015 5.72433 5.74545 5.82668 5.90592 6.05625 6.06924 6.14905 6.33836 6.39158 6.53144 6.83910 6.97798 7.17862 7.30325 7.51412 7.62424 7.88958 8.24997 8.70061 9.11070 9.60649 11.08268 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.004620 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.691317 B = 6059.576071 C = 6478.991390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.046 0.954 4 C 0.080 3.920 5 H 0.040 0.960 6 N -0.663 5.663 7 C 0.063 3.937 8 C 0.066 3.934 9 O -0.379 6.379 10 C 0.193 3.807 11 C -0.509 4.509 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.902 5.902 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.115 4.115 20 C 0.036 3.964 21 N -0.512 5.512 22 C 0.017 3.983 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.342 0.658 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.001 0.999 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 13.361 -8.936 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 H 0.064 0.936 4 C -0.031 4.031 5 H 0.057 0.943 6 N -0.298 5.298 7 C -0.066 4.066 8 C -0.012 4.012 9 O -0.298 6.298 10 C 0.119 3.881 11 C -0.547 4.547 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.734 3.266 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.153 4.153 20 C -0.092 4.092 21 N -0.236 5.236 22 C -0.132 4.132 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.164 0.836 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.156 12.241 -9.443 19.666 hybrid contribution 0.278 0.884 0.647 1.130 sum 12.434 13.124 -8.796 20.105 Atomic orbital electron populations 1.21700 0.93294 1.04237 1.00335 1.22463 0.97264 0.94830 0.89695 0.93588 1.22327 0.92371 0.94792 0.93571 0.94265 1.60635 1.08856 1.45965 1.14346 1.22017 0.97752 0.98376 0.88449 1.22212 0.94791 0.89400 0.94833 1.87961 1.50826 1.36904 1.54117 1.20180 0.82817 0.92784 0.92317 1.21076 1.14192 1.06964 1.12478 0.91476 1.24943 0.95991 0.98371 0.95260 1.69970 1.21365 1.39479 1.23308 0.86351 0.77448 0.82616 0.80186 1.20554 1.21171 1.19550 1.22591 0.98916 0.99871 0.93969 1.23218 0.90849 0.98242 0.96921 1.64664 1.26511 1.26055 1.06355 1.22513 1.00353 0.95215 0.95105 0.92887 0.93068 0.89401 0.83581 0.95137 0.90434 0.94312 0.94900 0.98086 0.97913 0.92789 0.91655 0.88652 0.89938 0.94285 0.95849 0.91326 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.24 37.15 0.31 -1.37 16 2 C 0.07 0.78 3.09 -66.65 -0.21 0.57 16 3 H 0.05 0.49 7.73 -51.93 -0.40 0.09 16 4 C 0.08 1.00 3.28 -66.36 -0.22 0.79 16 5 H 0.04 0.46 7.97 -51.93 -0.41 0.04 16 6 N -0.66 -9.89 5.24 -105.30 -0.55 -10.44 16 7 C 0.06 0.96 5.91 -3.82 -0.02 0.93 16 8 C 0.07 1.24 6.22 37.16 0.23 1.47 16 9 O -0.38 -9.39 10.27 -35.23 -0.36 -9.75 16 10 C 0.19 5.45 5.69 36.01 0.20 5.65 16 11 C -0.51 -15.39 9.43 -34.44 -0.32 -15.71 16 12 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 15 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.44 6.34 -24.87 -0.16 -1.59 16 20 C 0.04 0.39 6.56 -1.90 -0.01 0.38 16 21 N -0.51 -6.12 5.18 -230.79 -1.20 -7.32 16 22 C 0.02 0.16 9.40 60.07 0.56 0.72 16 23 H 0.05 0.57 7.09 -51.93 -0.37 0.21 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.33 7.45 -51.93 -0.39 0.94 16 26 H 0.34 4.83 6.12 -39.29 -0.24 4.59 16 27 H 0.03 0.39 8.10 -51.93 -0.42 -0.03 16 28 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.46 8.06 -51.93 -0.42 1.05 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 38 H 0.02 0.20 8.00 -51.93 -0.42 -0.22 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -32.03 320.17 -8.54 -40.56 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.24 Total: -1.81 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.27 Total: -6.63 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -1.01 Total: -44.53 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.36 Total: -9.75 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.03 -8.54 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719642187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.287 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds