Wall clock time and date at job start Mon Mar 30 2020 04:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 110.06909 * 2 1 4 4 C 1.54000 * 109.91328 * 121.20316 * 2 1 3 5 5 H 1.09000 * 110.30609 * 239.59108 * 4 2 1 6 6 N 1.46892 * 110.31006 * 1.65953 * 4 2 1 7 7 C 1.46897 * 111.00111 * 195.23762 * 6 4 2 8 8 C 1.53003 * 109.47323 * 180.02562 * 7 6 4 9 9 O 1.42891 * 109.47467 * 64.99718 * 8 7 6 10 10 C 1.42899 * 114.00537 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47566 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99661 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99837 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48489 * 109.47101 * 89.99699 * 15 13 11 17 17 H 1.48501 * 109.46954 * 210.00100 * 15 13 11 18 18 H 1.48498 * 109.46787 * 329.99657 * 15 13 11 19 19 C 1.54591 * 105.13951 * 120.57911 * 4 2 1 20 20 C 1.54935 * 102.92482 * 21.95508 * 19 4 2 21 21 N 1.47894 * 109.91937 * 238.78898 * 2 1 3 22 22 C 1.46901 * 111.00175 * 94.80656 * 21 2 1 23 23 H 1.08999 * 109.47720 * 304.97469 * 1 2 3 24 24 H 1.09007 * 109.47391 * 64.97370 * 1 2 3 25 25 H 1.09004 * 109.47585 * 184.97431 * 1 2 3 26 26 H 1.00897 * 111.00051 * 319.19209 * 6 4 2 27 27 H 1.09000 * 109.47200 * 60.00037 * 7 6 4 28 28 H 1.09006 * 109.47129 * 299.99799 * 7 6 4 29 29 H 1.09000 * 109.47003 * 185.00046 * 8 7 6 30 30 H 1.08997 * 109.47101 * 304.99553 * 8 7 6 31 31 H 1.08998 * 109.47173 * 299.99914 * 10 9 8 32 32 H 1.09006 * 109.47117 * 59.99722 * 10 9 8 33 33 H 0.96998 * 119.99840 * 180.02562 * 14 13 11 34 34 H 1.09001 * 110.72614 * 140.31375 * 19 4 2 35 35 H 1.09003 * 110.72311 * 263.59892 * 19 4 2 36 36 H 1.09003 * 110.66989 * 204.15459 * 20 19 4 37 37 H 1.08999 * 110.81122 * 81.08419 * 20 19 4 38 38 H 1.09005 * 109.46947 * 59.99662 * 22 21 2 39 39 H 1.08995 * 109.47301 * 180.02562 * 22 21 2 40 40 H 1.09004 * 109.46818 * 300.00647 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0237 0.0000 4 6 2.0544 -0.7501 1.2385 5 1 2.6698 -0.0890 1.8487 6 7 0.9334 -1.2756 2.0290 7 6 1.3761 -1.6697 3.3731 8 6 0.1839 -2.2113 4.1644 9 8 -0.2865 -3.4143 3.5535 10 6 -1.4052 -4.0049 4.2181 11 6 -1.8147 -5.2609 3.4929 12 1 -1.2744 -5.5767 2.6128 13 6 -2.8792 -6.0067 3.9531 14 7 -3.5374 -5.6217 5.0246 15 14 -3.3864 -7.5639 3.0546 16 1 -2.6504 -8.7233 3.6194 17 1 -4.8468 -7.7768 3.2190 18 1 -3.0653 -7.4292 1.6110 19 6 2.9057 -1.9117 0.6764 20 6 3.2680 -1.4186 -0.7470 21 7 2.0338 -0.7205 -1.1892 22 6 2.3212 0.2121 -2.2872 23 1 -0.3634 0.5890 0.8420 24 1 -0.3634 0.4348 -0.9312 25 1 -0.3634 -1.0238 0.0891 26 1 0.1804 -0.6059 2.0782 27 1 1.7907 -0.8029 3.8878 28 1 2.1395 -2.4435 3.2919 29 1 0.4925 -2.4205 5.1887 30 1 -0.6153 -1.4701 4.1700 31 1 -1.1300 -4.2513 5.2436 32 1 -2.2373 -3.3008 4.2244 33 1 -4.2860 -6.1466 5.3486 34 1 3.8050 -2.0558 1.2752 35 1 2.3212 -2.8305 0.6291 36 1 3.4887 -2.2618 -1.4017 37 1 4.1103 -0.7275 -0.7147 38 1 3.0772 0.9289 -1.9666 39 1 2.6897 -0.3440 -3.1492 40 1 1.4095 0.7434 -2.5606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719642187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:49 Heat of formation + Delta-G solvation = -59.842309 kcal Electronic energy + Delta-G solvation = -17861.165549 eV Core-core repulsion = 15096.037855 eV Total energy + Delta-G solvation = -2765.127694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50869 -38.63120 -36.33122 -34.84649 -32.39228 -32.30809 -29.75889 -28.26992 -26.05708 -25.76167 -24.45944 -23.06993 -21.86195 -20.37466 -18.62033 -17.52446 -17.29412 -16.92989 -16.53558 -16.21044 -16.06048 -15.38302 -15.10137 -14.92536 -14.34754 -13.89420 -13.76405 -13.42872 -13.41852 -12.97517 -12.83125 -12.78374 -12.51488 -12.48655 -12.19717 -12.16563 -12.06978 -11.87382 -11.69649 -11.46288 -11.23403 -10.83989 -10.16363 -9.39131 -9.16753 -8.30212 -6.41789 1.40563 1.43583 1.56044 2.36902 3.03471 3.03897 3.17774 3.28649 3.57858 3.83924 4.16248 4.26197 4.28311 4.30331 4.36824 4.51030 4.52029 4.57274 4.61731 4.70148 4.73060 4.83421 4.86098 4.91122 4.99870 5.01689 5.03588 5.11279 5.21622 5.32275 5.51080 5.57782 5.97405 5.99912 6.14100 6.24325 6.51655 6.60735 6.89432 7.30564 8.82253 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.004620 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.691317 B = 6059.576071 C = 6478.991390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.065 0.935 4 C 0.081 3.919 5 H 0.058 0.942 6 N -0.686 5.686 7 C 0.074 3.926 8 C 0.055 3.945 9 O -0.396 6.396 10 C 0.209 3.791 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.267 1.267 19 C -0.116 4.116 20 C 0.041 3.959 21 N -0.537 5.537 22 C 0.018 3.982 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.345 0.655 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.039 0.961 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.270 0.730 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.459 13.924 -9.750 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.040 4.040 3 H 0.083 0.917 4 C -0.029 4.029 5 H 0.076 0.924 6 N -0.321 5.321 7 C -0.055 4.055 8 C -0.022 4.022 9 O -0.315 6.315 10 C 0.133 3.867 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.571 5.571 15 Si 0.804 3.196 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.155 4.155 20 C -0.087 4.087 21 N -0.262 5.262 22 C -0.130 4.130 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.167 0.833 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.054 12.827 -10.256 20.979 hybrid contribution 0.029 0.784 0.921 1.210 sum 13.083 13.611 -9.335 21.061 Atomic orbital electron populations 1.21621 0.94071 1.02176 1.01188 1.22453 0.96637 0.95576 0.89347 0.91721 1.22395 0.91743 0.95009 0.93800 0.92378 1.60585 1.10133 1.46966 1.14436 1.21900 0.95581 0.99266 0.88713 1.22588 0.96378 0.87359 0.95882 1.87919 1.49589 1.39359 1.54647 1.19791 0.83284 0.92174 0.91408 1.21380 1.15426 1.08519 1.12966 0.92368 1.25935 0.95379 1.01886 0.95910 1.70069 1.21657 1.40962 1.24421 0.85206 0.77631 0.77912 0.78807 1.19189 1.19770 1.19103 1.22550 0.98957 0.98380 0.95570 1.23189 0.91170 0.98599 0.95708 1.64636 1.27326 1.27197 1.07045 1.22540 1.00893 0.95127 0.94485 0.91745 0.92412 0.92906 0.83301 0.91515 0.91178 0.93492 0.94316 0.99872 0.99884 0.92077 0.90281 0.92330 0.89963 0.92285 0.94575 0.90723 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.24 71.98 0.59 -2.55 16 2 C 0.07 1.49 3.09 45.06 0.14 1.63 16 3 H 0.06 1.18 7.73 -2.39 -0.02 1.16 16 4 C 0.08 1.89 3.28 45.80 0.15 2.04 16 5 H 0.06 1.17 7.97 -2.39 -0.02 1.15 16 6 N -0.69 -20.07 5.24 -487.05 -2.55 -22.63 16 7 C 0.07 2.18 5.91 86.30 0.51 2.69 16 8 C 0.06 2.09 6.22 71.98 0.45 2.53 16 9 O -0.40 -20.17 10.27 -148.98 -1.53 -21.70 16 10 C 0.21 12.17 5.69 71.24 0.41 12.58 16 11 C -0.55 -33.76 9.43 25.60 0.24 -33.52 16 12 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 15 Si 0.98 45.75 29.54 68.60 2.03 47.77 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 C -0.12 -2.80 6.34 31.80 0.20 -2.60 16 20 C 0.04 0.84 6.56 86.65 0.57 1.40 16 21 N -0.54 -12.07 5.18 -884.08 -4.58 -16.65 16 22 C 0.02 0.30 9.40 127.69 1.20 1.50 16 23 H 0.06 1.33 7.09 -2.39 -0.02 1.32 16 24 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.05 1.63 7.45 -2.38 -0.02 1.61 16 26 H 0.34 9.56 6.12 -89.70 -0.55 9.01 16 27 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.07 2.16 7.84 -2.38 -0.02 2.14 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 0.97 7.96 -2.39 -0.02 0.95 16 38 H 0.04 0.51 8.00 -2.38 -0.02 0.49 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -69.52 320.17 -1.00 -70.52 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.44 Total: 13.06 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.92 Total: -13.41 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -6.85 Total: -96.24 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.53 Total: -21.70 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.52 -1.00 -70.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719642187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.682 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds