Wall clock time and date at job start Mon Mar 30 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47316 * 2 1 4 4 C 1.52995 * 109.47024 * 240.00038 * 2 1 3 5 5 N 1.46502 * 109.47372 * 65.00286 * 4 2 1 6 6 C 1.46501 * 119.99467 * 269.99825 * 5 4 2 7 7 C 1.36932 * 120.00310 * 90.00080 * 5 4 2 8 8 H 1.08000 * 119.99699 * 337.63861 * 7 5 4 9 9 C 1.38809 * 120.00270 * 157.36585 * 7 5 4 10 10 N 1.31619 * 120.00004 * 156.00917 * 9 7 5 11 11 Si 1.86803 * 120.00112 * 336.01420 * 9 7 5 12 12 H 1.48496 * 109.46876 * 84.87296 * 11 9 7 13 13 H 1.48494 * 109.47428 * 204.87614 * 11 9 7 14 14 H 1.48503 * 109.46882 * 324.87812 * 11 9 7 15 15 C 1.52995 * 109.46892 * 119.99838 * 2 1 3 16 16 N 1.46891 * 109.47397 * 294.99974 * 15 2 1 17 17 C 1.47019 * 111.00106 * 293.63606 * 16 15 2 18 18 C 1.53100 * 109.26007 * 177.60644 * 17 16 15 19 19 O 1.43016 * 109.25803 * 56.84848 * 18 17 16 20 20 C 1.43022 * 113.73806 * 301.32980 * 19 18 17 21 21 C 1.47012 * 111.00433 * 170.00087 * 16 15 2 22 22 H 1.09004 * 109.47244 * 300.00569 * 1 2 3 23 23 H 1.09004 * 109.47115 * 59.99552 * 1 2 3 24 24 H 1.08991 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47559 * 304.99961 * 4 2 1 26 26 H 1.09006 * 109.47268 * 185.00117 * 4 2 1 27 27 H 1.09003 * 109.47229 * 272.54712 * 6 5 4 28 28 H 1.08996 * 109.47387 * 32.55651 * 6 5 4 29 29 H 1.09010 * 109.46711 * 152.55318 * 6 5 4 30 30 H 0.97005 * 119.99832 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.47359 * 55.00266 * 15 2 1 32 32 H 1.09009 * 109.46874 * 174.99946 * 15 2 1 33 33 H 1.08998 * 109.50396 * 297.54014 * 17 16 15 34 34 H 1.09001 * 109.50277 * 57.67063 * 17 16 15 35 35 H 1.08994 * 109.50623 * 296.91463 * 18 17 16 36 36 H 1.08996 * 109.54135 * 176.80613 * 18 17 16 37 37 H 1.09000 * 109.50506 * 298.73649 * 20 19 18 38 38 H 1.08994 * 109.53834 * 178.62381 * 20 19 18 39 39 H 1.09005 * 109.50847 * 302.32748 * 21 16 15 40 40 H 1.09006 * 109.50696 * 62.45805 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 0.3746 -0.2424 -3.1028 7 6 2.4847 1.0021 -2.9404 8 1 3.2215 1.4629 -2.2992 9 6 2.3851 1.3857 -4.2707 10 7 2.8035 2.5760 -4.6454 11 14 1.6571 0.2127 -5.5291 12 1 0.1776 0.3402 -5.5267 13 1 2.1806 0.5465 -6.8780 14 1 2.0343 -1.1812 -5.1826 15 6 2.0399 -0.7212 1.2492 16 7 1.6513 0.0374 2.4456 17 6 2.3404 1.3353 2.4933 18 6 1.8626 2.1158 3.7207 19 8 2.0960 1.3354 4.8962 20 6 1.4391 0.0650 4.8837 21 6 1.9126 -0.7363 3.6680 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -1.7198 -1.2952 26 1 3.1263 -0.7995 -1.2056 27 1 0.5076 -1.0443 -3.8290 28 1 -0.3612 -0.5451 -2.3578 29 1 0.0266 0.6559 -3.6131 30 1 2.7343 2.8439 -5.5752 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7994 1.2056 33 1 3.4162 1.1739 2.5607 34 1 2.1125 1.9017 1.5904 35 1 0.7968 2.3238 3.6276 36 1 2.4118 3.0546 3.7922 37 1 0.3609 0.2134 4.8243 38 1 1.6820 -0.4800 5.7958 39 1 1.3724 -1.6820 3.6227 40 1 2.9817 -0.9307 3.7542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720623831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:53 Heat of formation + Delta-G solvation = -15.602005 kcal Electronic energy + Delta-G solvation = -18441.617991 eV Core-core repulsion = 15678.408701 eV Total energy + Delta-G solvation = -2763.209290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62274 -37.22830 -35.51420 -32.87486 -31.26322 -30.99215 -27.75781 -27.13819 -25.36507 -24.25130 -24.03657 -21.34706 -20.34361 -19.29930 -16.72053 -16.56038 -16.14331 -15.29387 -15.21835 -15.08678 -14.83155 -14.41493 -13.79729 -13.55328 -13.30002 -12.73783 -12.50978 -12.06529 -12.05224 -11.95926 -11.57395 -11.43709 -11.25545 -10.98717 -10.62368 -10.50653 -10.37520 -10.20167 -9.94630 -9.89162 -9.66428 -9.42878 -8.52790 -8.29922 -6.96209 -5.92451 -3.23379 3.37959 3.52573 3.55974 3.72211 3.88817 4.58875 4.80546 4.92431 4.98792 5.06889 5.13559 5.23155 5.38195 5.40667 5.50041 5.53704 5.65293 5.70324 5.76579 5.85011 5.89546 5.97756 6.03784 6.24798 6.27870 6.32811 6.48250 6.65084 6.67279 6.75891 6.87706 6.97721 7.02196 7.09208 7.14864 7.97791 8.34340 8.99511 9.78133 10.11319 11.23744 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043638 B = 0.005207 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.489626 B = 5376.374762 C = 5700.202906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 H 0.074 0.926 4 C 0.157 3.843 5 N -0.608 5.608 6 C 0.100 3.900 7 C -0.261 4.261 8 H 0.085 0.915 9 C 0.023 3.977 10 N -0.907 5.907 11 Si 0.887 3.113 12 H -0.287 1.287 13 H -0.307 1.307 14 H -0.280 1.280 15 C 0.062 3.938 16 N -0.532 5.532 17 C 0.014 3.986 18 C 0.064 3.936 19 O -0.390 6.390 20 C 0.065 3.935 21 C 0.017 3.983 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.004 0.996 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -6.117 16.243 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 H 0.092 0.908 4 C 0.030 3.970 5 N -0.331 5.331 6 C -0.045 4.045 7 C -0.389 4.389 8 H 0.102 0.898 9 C -0.176 4.176 10 N -0.550 5.550 11 Si 0.718 3.282 12 H -0.215 1.215 13 H -0.235 1.235 14 H -0.206 1.206 15 C -0.066 4.066 16 N -0.258 5.258 17 C -0.114 4.114 18 C -0.013 4.013 19 O -0.308 6.308 20 C -0.012 4.012 21 C -0.112 4.112 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.174 -5.851 16.221 17.742 hybrid contribution 0.385 -0.921 -1.099 1.485 sum -3.789 -6.772 15.121 16.996 Atomic orbital electron populations 1.21698 0.95334 1.00280 1.01402 1.21813 0.96673 1.00886 0.93566 0.90785 1.20762 0.97891 0.92558 0.85804 1.44092 1.17176 1.42426 1.29438 1.21490 0.87903 0.99056 0.96001 1.18870 1.15192 1.11159 0.93645 0.89771 1.25149 0.98798 0.96605 0.97022 1.69893 1.50609 1.17298 1.17208 0.87007 0.78062 0.82363 0.80777 1.21458 1.23499 1.20642 1.22200 0.97796 0.97010 0.89548 1.62217 1.57799 1.03834 1.01914 1.22842 0.96640 0.91833 1.00045 1.22686 1.00939 0.93818 0.83810 1.87957 1.73118 1.29445 1.40319 1.22629 0.96921 0.84296 0.97383 1.22764 0.99731 0.97637 0.91026 0.93084 0.92194 0.94338 0.94533 0.93103 0.97856 0.94160 0.92434 0.92870 0.91157 0.94977 0.94125 0.88636 0.92300 0.88543 0.92414 0.88868 0.89909 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.08 37.16 0.30 -1.78 16 2 C -0.11 -1.81 2.52 -90.62 -0.23 -2.04 16 3 H 0.07 1.41 6.30 -51.93 -0.33 1.08 16 4 C 0.16 3.04 5.17 -4.04 -0.02 3.02 16 5 N -0.61 -14.43 2.56 -181.12 -0.46 -14.89 16 6 C 0.10 2.23 7.48 59.85 0.45 2.68 16 7 C -0.26 -7.28 10.04 -15.06 -0.15 -7.43 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.02 0.67 5.17 -17.43 -0.09 0.58 16 10 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 11 Si 0.89 22.88 24.03 -169.99 -4.08 18.80 16 12 H -0.29 -7.11 6.38 56.52 0.36 -6.75 16 13 H -0.31 -8.04 7.11 56.52 0.40 -7.63 16 14 H -0.28 -7.22 6.90 56.52 0.39 -6.83 16 15 C 0.06 0.87 4.35 -3.83 -0.02 0.85 16 16 N -0.53 -6.94 4.18 -234.31 -0.98 -7.92 16 17 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 18 C 0.06 0.75 7.01 37.21 0.26 1.01 16 19 O -0.39 -4.90 10.83 -35.23 -0.38 -5.28 16 20 C 0.06 0.67 7.01 37.21 0.26 0.93 16 21 C 0.02 0.19 5.64 -3.71 -0.02 0.16 16 22 H 0.05 0.78 7.75 -51.93 -0.40 0.38 16 23 H 0.06 1.08 5.84 -51.93 -0.30 0.77 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 27 H 0.00 0.08 5.63 -51.93 -0.29 -0.21 16 28 H 0.04 0.76 5.87 -51.93 -0.30 0.46 16 29 H 0.06 1.37 5.90 -51.92 -0.31 1.07 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 32 H 0.03 0.46 8.12 -51.92 -0.42 0.04 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.36 6.29 -51.93 -0.33 1.03 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.79 8.09 -51.93 -0.42 0.38 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -30.89 301.16 -6.80 -37.69 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.93 Total: -3.89 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.72 Total: -1.86 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.67 Total: -50.01 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.38 Total: -5.28 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.08 Total: 18.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.89 -6.80 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.089 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds