Wall clock time and date at job start Mon Mar 30 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47316 * 2 1 4 4 C 1.52995 * 109.47024 * 240.00038 * 2 1 3 5 5 N 1.46502 * 109.47372 * 65.00286 * 4 2 1 6 6 C 1.46501 * 119.99467 * 269.99825 * 5 4 2 7 7 C 1.36932 * 120.00310 * 90.00080 * 5 4 2 8 8 H 1.08000 * 119.99699 * 337.63861 * 7 5 4 9 9 C 1.38809 * 120.00270 * 157.36585 * 7 5 4 10 10 N 1.31619 * 120.00004 * 156.00917 * 9 7 5 11 11 Si 1.86803 * 120.00112 * 336.01420 * 9 7 5 12 12 H 1.48496 * 109.46876 * 84.87296 * 11 9 7 13 13 H 1.48494 * 109.47428 * 204.87614 * 11 9 7 14 14 H 1.48503 * 109.46882 * 324.87812 * 11 9 7 15 15 C 1.52995 * 109.46892 * 119.99838 * 2 1 3 16 16 N 1.46891 * 109.47397 * 294.99974 * 15 2 1 17 17 C 1.47019 * 111.00106 * 293.63606 * 16 15 2 18 18 C 1.53100 * 109.26007 * 177.60644 * 17 16 15 19 19 O 1.43016 * 109.25803 * 56.84848 * 18 17 16 20 20 C 1.43022 * 113.73806 * 301.32980 * 19 18 17 21 21 C 1.47012 * 111.00433 * 170.00087 * 16 15 2 22 22 H 1.09004 * 109.47244 * 300.00569 * 1 2 3 23 23 H 1.09004 * 109.47115 * 59.99552 * 1 2 3 24 24 H 1.08991 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47559 * 304.99961 * 4 2 1 26 26 H 1.09006 * 109.47268 * 185.00117 * 4 2 1 27 27 H 1.09003 * 109.47229 * 272.54712 * 6 5 4 28 28 H 1.08996 * 109.47387 * 32.55651 * 6 5 4 29 29 H 1.09010 * 109.46711 * 152.55318 * 6 5 4 30 30 H 0.97005 * 119.99832 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.47359 * 55.00266 * 15 2 1 32 32 H 1.09009 * 109.46874 * 174.99946 * 15 2 1 33 33 H 1.08998 * 109.50396 * 297.54014 * 17 16 15 34 34 H 1.09001 * 109.50277 * 57.67063 * 17 16 15 35 35 H 1.08994 * 109.50623 * 296.91463 * 18 17 16 36 36 H 1.08996 * 109.54135 * 176.80613 * 18 17 16 37 37 H 1.09000 * 109.50506 * 298.73649 * 20 19 18 38 38 H 1.08994 * 109.53834 * 178.62381 * 20 19 18 39 39 H 1.09005 * 109.50847 * 302.32748 * 21 16 15 40 40 H 1.09006 * 109.50696 * 62.45805 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 0.3746 -0.2424 -3.1028 7 6 2.4847 1.0021 -2.9404 8 1 3.2215 1.4629 -2.2992 9 6 2.3851 1.3857 -4.2707 10 7 2.8035 2.5760 -4.6454 11 14 1.6571 0.2127 -5.5291 12 1 0.1776 0.3402 -5.5267 13 1 2.1806 0.5465 -6.8780 14 1 2.0343 -1.1812 -5.1826 15 6 2.0399 -0.7212 1.2492 16 7 1.6513 0.0374 2.4456 17 6 2.3404 1.3353 2.4933 18 6 1.8626 2.1158 3.7207 19 8 2.0960 1.3354 4.8962 20 6 1.4391 0.0650 4.8837 21 6 1.9126 -0.7363 3.6680 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6054 -1.7198 -1.2952 26 1 3.1263 -0.7995 -1.2056 27 1 0.5076 -1.0443 -3.8290 28 1 -0.3612 -0.5451 -2.3578 29 1 0.0266 0.6559 -3.6131 30 1 2.7343 2.8439 -5.5752 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7994 1.2056 33 1 3.4162 1.1739 2.5607 34 1 2.1125 1.9017 1.5904 35 1 0.7968 2.3238 3.6276 36 1 2.4118 3.0546 3.7922 37 1 0.3609 0.2134 4.8243 38 1 1.6820 -0.4800 5.7958 39 1 1.3724 -1.6820 3.6227 40 1 2.9817 -0.9307 3.7542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720623831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:52 Heat of formation + Delta-G solvation = -37.540804 kcal Electronic energy + Delta-G solvation = -18442.569329 eV Core-core repulsion = 15678.408701 eV Total energy + Delta-G solvation = -2764.160628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.60812 -38.68125 -36.89819 -34.49218 -32.99875 -32.09527 -28.85198 -28.76233 -27.29988 -25.46624 -24.99553 -23.01677 -21.42874 -20.65683 -18.79430 -17.62208 -17.18369 -17.06021 -16.42484 -16.08202 -15.97864 -15.83038 -15.16629 -15.12437 -14.70232 -14.49640 -14.04266 -13.68746 -13.36881 -13.27263 -12.91309 -12.67880 -12.42927 -12.30211 -12.18119 -12.12688 -11.93311 -11.75594 -11.53836 -11.38832 -11.24660 -10.70700 -10.55941 -9.34603 -8.94432 -8.15764 -5.42639 1.33155 1.42666 1.51749 2.44333 2.74444 2.96658 3.10181 3.42836 3.90325 3.96856 4.05150 4.17800 4.19982 4.31215 4.39573 4.43451 4.55778 4.58616 4.63660 4.68859 4.72422 4.78541 4.84452 4.85409 4.91604 4.95046 5.03475 5.04262 5.17552 5.33495 5.56714 5.57983 5.85765 5.97672 6.05540 6.13110 6.19024 6.94526 7.67726 8.01657 9.04320 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043638 B = 0.005207 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.489626 B = 5376.374762 C = 5700.202906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 H 0.041 0.959 4 C 0.153 3.847 5 N -0.620 5.620 6 C 0.099 3.901 7 C -0.247 4.247 8 H 0.050 0.950 9 C -0.036 4.036 10 N -0.956 5.956 11 Si 0.950 3.050 12 H -0.269 1.269 13 H -0.314 1.314 14 H -0.274 1.274 15 C 0.072 3.928 16 N -0.537 5.537 17 C 0.016 3.984 18 C 0.068 3.932 19 O -0.405 6.405 20 C 0.062 3.938 21 C 0.017 3.983 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.008 0.992 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -8.404 17.566 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.119 4.119 3 H 0.060 0.940 4 C 0.027 3.973 5 N -0.344 5.344 6 C -0.045 4.045 7 C -0.377 4.377 8 H 0.068 0.932 9 C -0.230 4.230 10 N -0.602 5.602 11 Si 0.779 3.221 12 H -0.194 1.194 13 H -0.243 1.243 14 H -0.200 1.200 15 C -0.057 4.057 16 N -0.262 5.262 17 C -0.112 4.112 18 C -0.009 4.009 19 O -0.324 6.324 20 C -0.015 4.015 21 C -0.111 4.111 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.751 -8.179 17.585 20.229 hybrid contribution 0.892 -0.209 -1.379 1.656 sum -4.860 -8.387 16.206 18.884 Atomic orbital electron populations 1.21597 0.94261 1.01319 1.00615 1.21584 0.97362 0.99056 0.93909 0.94021 1.20965 0.97685 0.93624 0.84990 1.44213 1.17361 1.42238 1.30608 1.21538 0.87800 0.98151 0.96998 1.18803 1.14451 1.11218 0.93195 0.93202 1.25765 1.00575 0.97785 0.98923 1.70019 1.53653 1.19161 1.17398 0.85978 0.78351 0.80083 0.77663 1.19444 1.24348 1.19997 1.22049 0.97385 0.97524 0.88691 1.62209 1.57619 1.03838 1.02504 1.22783 0.96121 0.92260 1.00051 1.22678 1.01205 0.93985 0.82982 1.87942 1.73630 1.30475 1.40355 1.22827 0.97050 0.83478 0.98116 1.22865 0.99835 0.98287 0.90099 0.92460 0.94374 0.92227 0.91678 0.94211 0.97422 0.90477 0.94507 0.93085 0.89002 0.95691 0.95164 0.90494 0.91992 0.87475 0.91936 0.86444 0.87846 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 8.08 71.98 0.58 -3.00 16 2 C -0.10 -3.17 2.52 -10.80 -0.03 -3.19 16 3 H 0.04 1.62 6.30 -2.39 -0.02 1.61 16 4 C 0.15 5.69 5.17 86.38 0.45 6.14 16 5 N -0.62 -28.94 2.56 -726.93 -1.86 -30.80 16 6 C 0.10 4.19 7.48 127.77 0.96 5.14 16 7 C -0.25 -14.09 10.04 84.03 0.84 -13.25 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 C -0.04 -2.12 5.17 84.86 0.44 -1.68 16 10 N -0.96 -60.75 13.97 21.65 0.30 -60.45 16 11 Si 0.95 47.30 24.03 68.60 1.65 48.94 16 12 H -0.27 -12.45 6.38 99.48 0.63 -11.81 16 13 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 14 H -0.27 -13.26 6.90 99.48 0.69 -12.58 16 15 C 0.07 1.85 4.35 86.30 0.37 2.22 16 16 N -0.54 -13.01 4.18 -895.21 -3.74 -16.75 16 17 C 0.02 0.42 5.44 86.31 0.47 0.89 16 18 C 0.07 1.53 7.01 72.02 0.50 2.04 16 19 O -0.41 -9.47 10.83 -148.98 -1.61 -11.08 16 20 C 0.06 1.10 7.01 72.01 0.50 1.61 16 21 C 0.02 0.33 5.64 86.31 0.49 0.81 16 22 H 0.06 1.63 7.75 -2.38 -0.02 1.61 16 23 H 0.04 1.29 5.84 -2.38 -0.01 1.28 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.04 1.55 8.04 -2.38 -0.02 1.53 16 27 H 0.01 0.33 5.63 -2.39 -0.01 0.32 16 28 H 0.08 2.66 5.87 -2.39 -0.01 2.65 16 29 H 0.04 1.69 5.90 -2.38 -0.01 1.68 16 30 H 0.26 15.76 8.31 -92.70 -0.77 14.98 16 31 H 0.09 2.01 8.04 -2.39 -0.02 1.99 16 32 H 0.02 0.68 8.12 -2.38 -0.02 0.66 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 2.27 6.29 -2.39 -0.02 2.26 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.58 8.09 -2.38 -0.02 1.56 16 40 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -67.00 301.16 1.21 -65.79 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.90 Total: 6.61 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.58 Total: -2.27 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.30 Total: -107.99 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.61 Total: -11.08 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.65 Total: 48.94 kcal Total: -67.00 1.21 -65.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.252 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds