Wall clock time and date at job start Mon Mar 30 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46966 * 2 1 4 4 C 1.53001 * 109.46978 * 119.99353 * 2 1 3 5 5 N 1.46494 * 109.47404 * 295.00442 * 4 2 1 6 6 C 1.46500 * 119.99931 * 89.99912 * 5 4 2 7 7 C 1.36937 * 120.00176 * 269.99520 * 5 4 2 8 8 H 1.08007 * 119.99637 * 19.30852 * 7 5 4 9 9 C 1.38808 * 120.00547 * 199.30782 * 7 5 4 10 10 N 1.31619 * 119.99810 * 15.44184 * 9 7 5 11 11 Si 1.86805 * 120.00247 * 195.44918 * 9 7 5 12 12 H 1.48493 * 109.47028 * 59.99795 * 11 9 7 13 13 H 1.48495 * 109.46971 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46927 * 299.99856 * 11 9 7 15 15 C 1.53001 * 109.47553 * 240.00068 * 2 1 3 16 16 N 1.46891 * 109.47081 * 63.26733 * 15 2 1 17 17 C 1.47013 * 111.00142 * 74.79195 * 16 15 2 18 18 C 1.53098 * 109.25888 * 182.39059 * 17 16 15 19 19 O 1.43009 * 109.25933 * 303.14795 * 18 17 16 20 20 C 1.43017 * 113.73691 * 58.67002 * 19 18 17 21 21 C 1.47019 * 111.00101 * 198.42163 * 16 15 2 22 22 H 1.09003 * 109.46702 * 64.92052 * 1 2 3 23 23 H 1.08995 * 109.46771 * 184.91378 * 1 2 3 24 24 H 1.08994 * 109.47065 * 304.91936 * 1 2 3 25 25 H 1.08998 * 109.46833 * 55.00544 * 4 2 1 26 26 H 1.09001 * 109.46800 * 174.99866 * 4 2 1 27 27 H 1.09004 * 109.46924 * 95.26026 * 6 5 4 28 28 H 1.09004 * 109.46971 * 215.25330 * 6 5 4 29 29 H 1.08992 * 109.47030 * 335.25601 * 6 5 4 30 30 H 0.96998 * 119.99816 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46761 * 303.26876 * 15 2 1 32 32 H 1.09002 * 109.47099 * 183.27133 * 15 2 1 33 33 H 1.08997 * 109.50896 * 62.45315 * 17 16 15 34 34 H 1.09006 * 109.50491 * 302.32222 * 17 16 15 35 35 H 1.09008 * 109.50338 * 183.21265 * 18 17 16 36 36 H 1.08997 * 109.54368 * 63.10778 * 18 17 16 37 37 H 1.08996 * 109.50471 * 61.26841 * 20 19 18 38 38 H 1.09002 * 109.50540 * 181.39133 * 20 19 18 39 39 H 1.09004 * 109.50757 * 297.54888 * 21 16 15 40 40 H 1.08997 * 109.50223 * 57.67511 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6523 0.0355 2.4424 6 6 0.3744 -0.2422 3.1027 7 6 2.4845 1.0023 2.9404 8 1 3.2538 1.4280 2.3132 9 6 2.3393 1.4352 4.2512 10 7 1.6271 0.7281 5.1027 11 14 3.1547 3.0214 4.8068 12 1 2.6389 4.1534 3.9960 13 1 2.8483 3.2598 6.2401 14 1 4.6246 2.9122 4.6258 15 6 2.0401 -0.7212 -1.2492 16 7 1.6160 0.0153 -2.4473 17 6 2.4150 1.2364 -2.6254 18 6 1.9018 2.0019 -3.8479 19 8 1.9539 1.1489 -4.9946 20 6 1.1861 -0.0497 -4.8558 21 6 1.6921 -0.8360 -3.6435 22 1 -0.3633 0.4356 -0.9308 23 1 -0.3633 -1.0239 0.0880 24 1 -0.3633 0.5882 0.8426 25 1 1.6054 -1.7197 1.2953 26 1 3.1263 -0.7993 1.2057 27 1 0.5337 -0.9431 3.9222 28 1 -0.0415 0.6861 3.4944 29 1 -0.3196 -0.6762 2.3831 30 1 1.5259 1.0304 6.0188 31 1 1.6297 -1.7306 -1.2790 32 1 3.1285 -0.7722 -1.2203 33 1 3.4607 0.9685 -2.7764 34 1 2.3237 1.8637 -1.7386 35 1 2.5273 2.8784 -4.0175 36 1 0.8728 2.3171 -3.6752 37 1 0.1362 0.2052 -4.7120 38 1 1.2940 -0.6571 -5.7544 39 1 2.7263 -1.1372 -3.8108 40 1 1.0731 -1.7215 -3.4999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720623832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:56 Heat of formation + Delta-G solvation = -20.681170 kcal Electronic energy + Delta-G solvation = -18389.080205 eV Core-core repulsion = 15625.650666 eV Total energy + Delta-G solvation = -2763.429539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.60124 -37.04477 -35.33431 -32.86252 -31.22575 -30.40718 -27.64650 -26.60148 -25.35980 -24.10470 -23.94978 -21.18097 -20.33127 -19.28415 -16.65359 -16.42524 -16.16325 -15.25528 -15.08480 -14.97953 -14.63848 -14.07749 -13.81596 -13.49003 -12.96894 -12.66901 -12.40069 -11.98197 -11.81437 -11.46948 -11.43727 -11.00323 -10.93444 -10.85297 -10.67139 -10.62602 -10.29791 -10.10296 -9.91982 -9.79639 -9.73959 -9.60876 -8.46054 -8.27242 -6.68486 -5.65764 -3.08051 3.41638 3.47403 3.48320 3.71962 3.89707 4.55729 4.82483 4.96979 4.98689 5.07997 5.21985 5.38962 5.47195 5.49272 5.52080 5.57957 5.71266 5.78659 5.84503 5.91645 5.92301 6.07758 6.13418 6.37009 6.53272 6.71820 6.78447 6.86492 6.94607 7.03659 7.04782 7.14071 7.19312 7.47745 7.78274 7.86983 8.45335 9.30901 9.96178 10.44227 11.39168 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.005312 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.197620 B = 5269.979371 C = 5778.860675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 H 0.067 0.933 4 C 0.158 3.842 5 N -0.600 5.600 6 C 0.163 3.837 7 C -0.250 4.250 8 H 0.066 0.934 9 C -0.001 4.001 10 N -0.909 5.909 11 Si 0.901 3.099 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.062 3.938 16 N -0.532 5.532 17 C 0.017 3.983 18 C 0.064 3.936 19 O -0.390 6.390 20 C 0.065 3.935 21 C 0.017 3.983 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.003 0.997 30 H 0.251 0.749 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -2.062 -16.866 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 H 0.085 0.915 4 C 0.029 3.971 5 N -0.323 5.323 6 C 0.018 3.982 7 C -0.380 4.380 8 H 0.084 0.916 9 C -0.199 4.199 10 N -0.555 5.555 11 Si 0.732 3.268 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.211 1.211 15 C -0.066 4.066 16 N -0.257 5.257 17 C -0.112 4.112 18 C -0.013 4.013 19 O -0.309 6.309 20 C -0.013 4.013 21 C -0.111 4.111 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.760 -1.858 -16.753 16.948 hybrid contribution 1.166 0.534 0.615 1.423 sum -0.594 -1.324 -16.138 16.203 Atomic orbital electron populations 1.21635 0.95329 1.00327 1.01018 1.21842 0.96727 1.00478 0.93711 0.91475 1.20711 0.97188 0.92843 0.86317 1.43841 1.18418 1.41663 1.28346 1.20841 0.84780 0.99348 0.93205 1.19135 1.12563 1.12234 0.94027 0.91602 1.24908 1.00200 0.99213 0.95565 1.70095 1.44400 1.37299 1.03695 0.86379 0.79036 0.84005 0.77414 1.21225 1.21693 1.21083 1.22220 0.97544 0.97166 0.89635 1.62215 1.54687 1.06258 1.02573 1.22815 0.95373 0.93311 0.99660 1.22677 1.01408 0.92563 0.84623 1.87950 1.71413 1.32547 1.38954 1.22640 0.95233 0.86024 0.97355 1.22777 1.00316 0.96794 0.91258 0.93231 0.94430 0.92409 0.94808 0.94060 0.95705 0.94109 0.97859 0.93845 0.91283 0.94936 0.94239 0.88974 0.88662 0.92259 0.92357 0.88854 0.94349 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.89 37.16 0.29 -1.86 16 2 C -0.11 -1.85 2.63 -90.62 -0.24 -2.09 16 3 H 0.07 1.30 6.75 -51.92 -0.35 0.95 16 4 C 0.16 3.25 5.14 -4.04 -0.02 3.23 16 5 N -0.60 -15.19 2.76 -181.12 -0.50 -15.69 16 6 C 0.16 4.07 7.93 59.85 0.47 4.55 16 7 C -0.25 -6.94 9.68 -15.06 -0.15 -7.08 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 9 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 16 10 N -0.91 -26.96 10.63 55.49 0.59 -26.37 16 11 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.06 0.90 4.40 -3.83 -0.02 0.88 16 16 N -0.53 -7.07 3.96 -234.31 -0.93 -8.00 16 17 C 0.02 0.21 5.47 -3.71 -0.02 0.19 16 18 C 0.06 0.74 7.01 37.21 0.26 1.00 16 19 O -0.39 -4.86 10.83 -35.23 -0.38 -5.24 16 20 C 0.06 0.67 7.01 37.20 0.26 0.93 16 21 C 0.02 0.19 5.61 -3.71 -0.02 0.17 16 22 H 0.05 0.80 7.56 -51.93 -0.39 0.40 16 23 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 24 H 0.06 1.12 6.42 -51.93 -0.33 0.79 16 25 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 26 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 27 H 0.02 0.67 7.42 -51.93 -0.39 0.29 16 28 H 0.04 1.10 7.16 -51.93 -0.37 0.73 16 29 H 0.00 0.06 6.27 -51.93 -0.33 -0.26 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 32 H 0.03 0.48 8.01 -51.93 -0.42 0.06 16 33 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.09 1.27 6.71 -51.93 -0.35 0.92 16 35 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -30.24 308.35 -7.95 -38.19 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -7.09 Total: -4.44 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 0.74 Total: -0.21 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.84 Total: -50.05 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.38 Total: -5.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.24 -7.95 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds