Wall clock time and date at job start Mon Mar 30 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46966 * 2 1 4 4 C 1.53001 * 109.46978 * 119.99353 * 2 1 3 5 5 N 1.46494 * 109.47404 * 295.00442 * 4 2 1 6 6 C 1.46500 * 119.99931 * 89.99912 * 5 4 2 7 7 C 1.36937 * 120.00176 * 269.99520 * 5 4 2 8 8 H 1.08007 * 119.99637 * 19.30852 * 7 5 4 9 9 C 1.38808 * 120.00547 * 199.30782 * 7 5 4 10 10 N 1.31619 * 119.99810 * 15.44184 * 9 7 5 11 11 Si 1.86805 * 120.00247 * 195.44918 * 9 7 5 12 12 H 1.48493 * 109.47028 * 59.99795 * 11 9 7 13 13 H 1.48495 * 109.46971 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46927 * 299.99856 * 11 9 7 15 15 C 1.53001 * 109.47553 * 240.00068 * 2 1 3 16 16 N 1.46891 * 109.47081 * 63.26733 * 15 2 1 17 17 C 1.47013 * 111.00142 * 74.79195 * 16 15 2 18 18 C 1.53098 * 109.25888 * 182.39059 * 17 16 15 19 19 O 1.43009 * 109.25933 * 303.14795 * 18 17 16 20 20 C 1.43017 * 113.73691 * 58.67002 * 19 18 17 21 21 C 1.47019 * 111.00101 * 198.42163 * 16 15 2 22 22 H 1.09003 * 109.46702 * 64.92052 * 1 2 3 23 23 H 1.08995 * 109.46771 * 184.91378 * 1 2 3 24 24 H 1.08994 * 109.47065 * 304.91936 * 1 2 3 25 25 H 1.08998 * 109.46833 * 55.00544 * 4 2 1 26 26 H 1.09001 * 109.46800 * 174.99866 * 4 2 1 27 27 H 1.09004 * 109.46924 * 95.26026 * 6 5 4 28 28 H 1.09004 * 109.46971 * 215.25330 * 6 5 4 29 29 H 1.08992 * 109.47030 * 335.25601 * 6 5 4 30 30 H 0.96998 * 119.99816 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46761 * 303.26876 * 15 2 1 32 32 H 1.09002 * 109.47099 * 183.27133 * 15 2 1 33 33 H 1.08997 * 109.50896 * 62.45315 * 17 16 15 34 34 H 1.09006 * 109.50491 * 302.32222 * 17 16 15 35 35 H 1.09008 * 109.50338 * 183.21265 * 18 17 16 36 36 H 1.08997 * 109.54368 * 63.10778 * 18 17 16 37 37 H 1.08996 * 109.50471 * 61.26841 * 20 19 18 38 38 H 1.09002 * 109.50540 * 181.39133 * 20 19 18 39 39 H 1.09004 * 109.50757 * 297.54888 * 21 16 15 40 40 H 1.08997 * 109.50223 * 57.67511 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6523 0.0355 2.4424 6 6 0.3744 -0.2422 3.1027 7 6 2.4845 1.0023 2.9404 8 1 3.2538 1.4280 2.3132 9 6 2.3393 1.4352 4.2512 10 7 1.6271 0.7281 5.1027 11 14 3.1547 3.0214 4.8068 12 1 2.6389 4.1534 3.9960 13 1 2.8483 3.2598 6.2401 14 1 4.6246 2.9122 4.6258 15 6 2.0401 -0.7212 -1.2492 16 7 1.6160 0.0153 -2.4473 17 6 2.4150 1.2364 -2.6254 18 6 1.9018 2.0019 -3.8479 19 8 1.9539 1.1489 -4.9946 20 6 1.1861 -0.0497 -4.8558 21 6 1.6921 -0.8360 -3.6435 22 1 -0.3633 0.4356 -0.9308 23 1 -0.3633 -1.0239 0.0880 24 1 -0.3633 0.5882 0.8426 25 1 1.6054 -1.7197 1.2953 26 1 3.1263 -0.7993 1.2057 27 1 0.5337 -0.9431 3.9222 28 1 -0.0415 0.6861 3.4944 29 1 -0.3196 -0.6762 2.3831 30 1 1.5259 1.0304 6.0188 31 1 1.6297 -1.7306 -1.2790 32 1 3.1285 -0.7722 -1.2203 33 1 3.4607 0.9685 -2.7764 34 1 2.3237 1.8637 -1.7386 35 1 2.5273 2.8784 -4.0175 36 1 0.8728 2.3171 -3.6752 37 1 0.1362 0.2052 -4.7120 38 1 1.2940 -0.6571 -5.7544 39 1 2.7263 -1.1372 -3.8108 40 1 1.0731 -1.7215 -3.4999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720623832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:56 Heat of formation + Delta-G solvation = -40.218312 kcal Electronic energy + Delta-G solvation = -18389.927399 eV Core-core repulsion = 15625.650666 eV Total energy + Delta-G solvation = -2764.276734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57336 -38.51405 -36.79319 -34.48987 -32.35556 -32.06672 -28.79234 -28.38230 -27.31916 -25.29076 -24.96730 -22.95358 -21.39118 -20.70985 -18.62743 -17.56114 -17.07548 -16.84245 -16.28374 -15.97070 -15.95454 -15.51731 -15.45992 -14.87936 -14.53611 -14.30208 -13.66919 -13.47182 -13.09903 -12.84186 -12.80097 -12.67249 -12.49337 -12.36423 -12.28094 -12.09820 -11.88557 -11.73681 -11.56148 -11.50070 -11.25165 -10.66138 -10.54060 -9.31972 -8.75263 -7.80068 -5.24576 1.45454 1.48298 1.54690 2.51787 2.77571 2.99252 3.32438 3.71915 3.94930 4.00407 4.05945 4.21398 4.22466 4.32756 4.44420 4.46903 4.61046 4.66600 4.73109 4.78928 4.83760 4.86119 4.87490 4.93264 5.03176 5.05211 5.19629 5.30049 5.41368 5.57749 5.61052 5.63678 5.74605 6.00592 6.07323 6.20006 6.34154 7.17977 7.92562 8.34931 9.22993 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.005312 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.197620 B = 5269.979371 C = 5778.860675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 H 0.045 0.955 4 C 0.155 3.845 5 N -0.616 5.616 6 C 0.181 3.819 7 C -0.257 4.257 8 H 0.068 0.932 9 C -0.056 4.056 10 N -0.941 5.941 11 Si 0.965 3.035 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.276 1.276 15 C 0.073 3.927 16 N -0.539 5.539 17 C 0.017 3.983 18 C 0.067 3.933 19 O -0.404 6.404 20 C 0.063 3.937 21 C 0.017 3.983 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.047 0.953 26 H 0.036 0.964 27 H -0.003 1.003 28 H 0.012 0.988 29 H 0.036 0.964 30 H 0.247 0.753 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -2.246 -18.814 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.028 3.972 5 N -0.339 5.339 6 C 0.036 3.964 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.588 5.588 11 Si 0.793 3.207 12 H -0.207 1.207 13 H -0.221 1.221 14 H -0.202 1.202 15 C -0.055 4.055 16 N -0.264 5.264 17 C -0.111 4.111 18 C -0.009 4.009 19 O -0.323 6.323 20 C -0.014 4.014 21 C -0.111 4.111 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.055 0.945 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.683 -2.052 -18.750 18.937 hybrid contribution 1.142 0.535 1.145 1.703 sum -0.540 -1.517 -17.605 17.679 Atomic orbital electron populations 1.21519 0.94754 1.00579 1.00438 1.21558 0.96955 0.99086 0.93779 0.93689 1.20893 0.97118 0.93354 0.85804 1.44077 1.18268 1.41961 1.29602 1.20559 0.85412 0.97309 0.93154 1.19454 1.12506 1.12648 0.94113 0.91456 1.25669 1.01442 1.02173 0.95808 1.70260 1.46152 1.38747 1.03671 0.85370 0.78426 0.80329 0.76533 1.20683 1.22067 1.20173 1.22018 0.97286 0.97413 0.88828 1.62169 1.54645 1.06603 1.03023 1.22797 0.95220 0.93271 0.99818 1.22697 1.01690 0.92741 0.83806 1.87937 1.71887 1.33319 1.39197 1.22812 0.95034 0.85539 0.98023 1.22865 1.00648 0.97078 0.90463 0.91999 0.93260 0.95117 0.93425 0.94597 0.98482 0.96948 0.94575 0.94418 0.89753 0.95233 0.94717 0.90344 0.87190 0.92213 0.92112 0.86474 0.94549 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.89 71.98 0.57 -3.20 16 2 C -0.09 -3.12 2.63 -10.79 -0.03 -3.15 16 3 H 0.04 1.73 6.75 -2.38 -0.02 1.71 16 4 C 0.15 6.25 5.14 86.38 0.44 6.69 16 5 N -0.62 -31.28 2.76 -726.95 -2.01 -33.29 16 6 C 0.18 9.14 7.93 127.77 1.01 10.15 16 7 C -0.26 -14.35 9.68 84.03 0.81 -13.54 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 C -0.06 -3.23 5.06 84.86 0.43 -2.80 16 10 N -0.94 -56.92 10.63 21.65 0.23 -56.69 16 11 Si 0.96 45.90 29.58 68.60 2.03 47.93 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.07 1.95 4.40 86.31 0.38 2.33 16 16 N -0.54 -13.14 3.96 -895.23 -3.55 -16.69 16 17 C 0.02 0.42 5.47 86.31 0.47 0.89 16 18 C 0.07 1.43 7.01 72.01 0.50 1.93 16 19 O -0.40 -9.16 10.83 -148.98 -1.61 -10.77 16 20 C 0.06 1.12 7.01 72.01 0.50 1.62 16 21 C 0.02 0.34 5.61 86.31 0.48 0.82 16 22 H 0.06 1.86 7.56 -2.39 -0.02 1.84 16 23 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 24 H 0.03 1.15 6.42 -2.39 -0.02 1.14 16 25 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 26 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 27 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 28 H 0.01 0.66 7.16 -2.38 -0.02 0.64 16 29 H 0.04 1.55 6.27 -2.39 -0.02 1.53 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.08 2.02 7.88 -2.39 -0.02 2.01 16 32 H 0.03 0.81 8.01 -2.39 -0.02 0.79 16 33 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16 34 H 0.08 2.12 6.71 -2.38 -0.02 2.10 16 35 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -64.42 308.35 1.66 -62.77 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.98 Total: 4.98 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.58 Total: 1.76 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.32 Total: -106.67 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.61 Total: -10.77 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -64.42 1.66 -62.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.548 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds