Wall clock time and date at job start Mon Mar 30 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.28721 * 2 1 4 4 C 1.54379 * 110.32088 * 237.76560 * 2 1 3 5 5 N 1.48565 * 104.59437 * 264.95552 * 4 2 1 6 6 C 1.46899 * 111.00161 * 200.96481 * 5 4 2 7 7 C 1.48728 * 104.28465 * 320.57634 * 5 4 2 8 8 C 1.54258 * 110.32283 * 122.13006 * 2 1 3 9 9 H 1.08996 * 110.32494 * 359.89131 * 8 2 1 10 10 N 1.46904 * 110.32024 * 237.79332 * 8 2 1 11 11 C 1.46899 * 111.00029 * 156.42754 * 10 8 2 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.47396 * 64.99580 * 12 11 10 14 14 C 1.42896 * 114.00313 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46851 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00616 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46998 * 59.99471 * 19 17 15 21 21 H 1.48501 * 109.47228 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46623 * 299.99565 * 19 17 15 23 23 H 1.09001 * 109.46987 * 297.87514 * 1 2 3 24 24 H 1.09001 * 109.47124 * 57.87223 * 1 2 3 25 25 H 1.09004 * 109.47028 * 177.87271 * 1 2 3 26 26 H 1.08995 * 110.41596 * 23.73668 * 4 2 1 27 27 H 1.09006 * 110.40947 * 146.18195 * 4 2 1 28 28 H 1.09004 * 109.47040 * 60.12288 * 6 5 4 29 29 H 1.09000 * 109.47449 * 180.12582 * 6 5 4 30 30 H 1.09005 * 109.46895 * 300.12929 * 6 5 4 31 31 H 1.08995 * 110.38621 * 280.63654 * 7 5 4 32 32 H 1.08998 * 110.50327 * 158.14908 * 7 5 4 33 33 H 1.00902 * 111.00190 * 32.46454 * 10 8 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 35 35 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 36 36 H 1.09001 * 109.47630 * 184.99901 * 12 11 10 37 37 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 38 38 H 1.08999 * 109.46799 * 300.00326 * 14 13 12 39 39 H 1.08998 * 109.47187 * 59.99969 * 14 13 12 40 40 H 0.97003 * 120.00101 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7722 -1.2246 5 7 2.3147 -2.1474 -0.7205 6 6 3.2649 -2.8610 -1.5841 7 6 2.8800 -1.9431 0.6399 8 6 2.0657 -0.7693 1.2250 9 1 1.2388 -1.1453 1.8273 10 7 2.9315 0.0990 2.0341 11 6 2.9978 -0.3717 3.4241 12 6 3.9068 0.5552 4.2336 13 8 3.3203 1.8565 4.3026 14 6 4.0942 2.8045 5.0405 15 6 3.3849 4.1341 5.0488 16 1 2.4381 4.2444 4.5410 17 6 3.9453 5.2103 5.7038 18 7 5.0984 5.0762 6.3217 19 14 3.0666 6.8587 5.7136 20 1 1.7338 6.7053 6.3503 21 1 3.8707 7.8438 6.4805 22 1 2.8964 7.3371 4.3180 23 1 -0.3633 0.4805 0.9084 24 1 -0.3633 0.5465 -0.8703 25 1 -0.3633 -1.0270 -0.0381 26 1 1.3213 -0.7878 -2.0202 27 1 2.9941 -0.3241 -1.5801 28 1 4.2121 -2.3219 -1.6054 29 1 3.4272 -3.8656 -1.1936 30 1 2.8605 -2.9248 -2.5944 31 1 3.9357 -1.6792 0.5766 32 1 2.7468 -2.8383 1.2471 33 1 2.6225 1.0586 1.9915 34 1 1.9973 -0.3687 3.8568 35 1 3.4001 -1.3845 3.4460 36 1 4.0272 0.1571 5.2411 37 1 4.8815 0.6213 3.7502 38 1 4.2188 2.4531 6.0647 39 1 5.0726 2.9171 4.5734 40 1 5.4925 5.8332 6.7829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722255462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:38 Heat of formation + Delta-G solvation = -50.245684 kcal Electronic energy + Delta-G solvation = -17632.045487 eV Core-core repulsion = 14867.333934 eV Total energy + Delta-G solvation = -2764.711553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46619 -37.00514 -35.00319 -33.01285 -32.52643 -29.61462 -27.72890 -26.91102 -26.47102 -23.84048 -22.36891 -21.62654 -20.76666 -20.00078 -16.44791 -16.22743 -15.77478 -15.71804 -15.04051 -14.78054 -14.44454 -14.29385 -13.77544 -13.49121 -13.33427 -12.98566 -12.73894 -12.29358 -12.23600 -11.61057 -11.55671 -11.47616 -11.42290 -10.96101 -10.86820 -10.81778 -10.72646 -10.66745 -10.42087 -10.00315 -9.12431 -8.82576 -8.63840 -8.23924 -8.17365 -6.11162 -4.13162 3.31617 3.34411 3.38045 3.85848 4.34279 4.43603 4.49997 4.57768 4.94346 4.94616 5.14377 5.25182 5.28265 5.33001 5.39049 5.49955 5.51930 5.52898 5.66880 5.73799 5.77841 5.79757 5.88453 5.98815 6.04004 6.08834 6.20347 6.21319 6.35259 6.64759 6.85611 7.11026 7.27156 7.43637 7.64347 7.78198 8.14939 8.57350 8.99595 9.51650 11.00316 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.004141 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.902277 B = 6759.955011 C = 7213.889249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.040 3.960 5 N -0.518 5.518 6 C 0.014 3.986 7 C 0.041 3.959 8 C 0.085 3.915 9 H 0.055 0.945 10 N -0.682 5.682 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.400 6.400 14 C 0.198 3.802 15 C -0.516 4.516 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.358 0.642 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -13.853 -13.023 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.088 4.088 5 N -0.242 5.242 6 C -0.135 4.135 7 C -0.088 4.088 8 C -0.026 4.026 9 H 0.073 0.927 10 N -0.316 5.316 11 C -0.063 4.063 12 C -0.016 4.016 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.554 4.554 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.143 -14.341 -13.170 20.139 hybrid contribution -0.048 1.494 0.549 1.592 sum -5.191 -12.847 -12.620 18.742 Atomic orbital electron populations 1.21816 0.94210 1.02085 1.01678 1.22087 0.96312 0.99514 0.93985 0.89696 1.23136 0.99956 0.88509 0.97241 1.65374 1.40792 1.15435 1.02600 1.22489 0.94204 0.99092 0.97684 1.23217 0.97990 0.97740 0.89837 1.22305 0.93345 0.93151 0.93805 0.92698 1.60577 1.53950 1.06947 1.10145 1.21993 0.98804 0.97700 0.87823 1.22295 0.96096 0.85905 0.97293 1.87782 1.49297 1.18699 1.76176 1.20166 0.91046 0.86573 0.89882 1.21016 1.07041 0.93619 1.33736 0.91676 1.24950 0.95083 0.99310 0.95130 1.69954 1.17370 1.31792 1.34643 0.86397 0.79413 0.82384 0.78277 1.20044 1.21150 1.19996 0.92597 0.92639 0.92086 0.90259 0.93606 0.95240 0.91417 0.91519 0.92354 0.90701 0.82146 0.94650 0.90807 0.94163 0.93633 0.97839 0.97646 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 2 C -0.10 -1.14 3.33 -89.24 -0.30 -1.44 16 3 H 0.08 1.04 7.54 -51.93 -0.39 0.64 16 4 C 0.04 0.42 6.04 -2.18 -0.01 0.41 16 5 N -0.52 -5.71 5.66 -238.08 -1.35 -7.06 16 6 C 0.01 0.13 9.53 60.06 0.57 0.70 16 7 C 0.04 0.48 6.19 -2.09 -0.01 0.47 16 8 C 0.08 1.06 3.03 -66.33 -0.20 0.86 16 9 H 0.06 0.71 7.41 -51.93 -0.38 0.32 16 10 N -0.68 -10.17 6.28 -105.27 -0.66 -10.83 16 11 C 0.07 1.01 5.95 -3.83 -0.02 0.98 16 12 C 0.06 1.16 6.28 37.16 0.23 1.40 16 13 O -0.40 -9.55 9.85 -35.23 -0.35 -9.89 16 14 C 0.20 5.45 5.69 36.00 0.20 5.66 16 15 C -0.52 -15.21 9.43 -34.44 -0.32 -15.54 16 16 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 27 H 0.05 0.50 7.97 -51.93 -0.41 0.08 16 28 H 0.03 0.27 7.98 -51.93 -0.41 -0.14 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.36 5.91 7.64 -39.29 -0.30 5.61 16 34 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -30.42 323.73 -8.72 -39.14 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.33 Total: -0.71 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.37 Total: -6.07 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -1.27 Total: -44.17 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.35 Total: -9.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.42 -8.72 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds