Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.28721 * 2 1 4 4 C 1.54379 * 110.32088 * 237.76560 * 2 1 3 5 5 N 1.48565 * 104.59437 * 264.95552 * 4 2 1 6 6 C 1.46899 * 111.00161 * 200.96481 * 5 4 2 7 7 C 1.48728 * 104.28465 * 320.57634 * 5 4 2 8 8 C 1.54258 * 110.32283 * 122.13006 * 2 1 3 9 9 H 1.08996 * 110.32494 * 359.89131 * 8 2 1 10 10 N 1.46904 * 110.32024 * 237.79332 * 8 2 1 11 11 C 1.46899 * 111.00029 * 156.42754 * 10 8 2 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.47396 * 64.99580 * 12 11 10 14 14 C 1.42896 * 114.00313 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46851 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00616 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46998 * 59.99471 * 19 17 15 21 21 H 1.48501 * 109.47228 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46623 * 299.99565 * 19 17 15 23 23 H 1.09001 * 109.46987 * 297.87514 * 1 2 3 24 24 H 1.09001 * 109.47124 * 57.87223 * 1 2 3 25 25 H 1.09004 * 109.47028 * 177.87271 * 1 2 3 26 26 H 1.08995 * 110.41596 * 23.73668 * 4 2 1 27 27 H 1.09006 * 110.40947 * 146.18195 * 4 2 1 28 28 H 1.09004 * 109.47040 * 60.12288 * 6 5 4 29 29 H 1.09000 * 109.47449 * 180.12582 * 6 5 4 30 30 H 1.09005 * 109.46895 * 300.12929 * 6 5 4 31 31 H 1.08995 * 110.38621 * 280.63654 * 7 5 4 32 32 H 1.08998 * 110.50327 * 158.14908 * 7 5 4 33 33 H 1.00902 * 111.00190 * 32.46454 * 10 8 2 34 34 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 35 35 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 36 36 H 1.09001 * 109.47630 * 184.99901 * 12 11 10 37 37 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 38 38 H 1.08999 * 109.46799 * 300.00326 * 14 13 12 39 39 H 1.08998 * 109.47187 * 59.99969 * 14 13 12 40 40 H 0.97003 * 120.00101 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7722 -1.2246 5 7 2.3147 -2.1474 -0.7205 6 6 3.2649 -2.8610 -1.5841 7 6 2.8800 -1.9431 0.6399 8 6 2.0657 -0.7693 1.2250 9 1 1.2388 -1.1453 1.8273 10 7 2.9315 0.0990 2.0341 11 6 2.9978 -0.3717 3.4241 12 6 3.9068 0.5552 4.2336 13 8 3.3203 1.8565 4.3026 14 6 4.0942 2.8045 5.0405 15 6 3.3849 4.1341 5.0488 16 1 2.4381 4.2444 4.5410 17 6 3.9453 5.2103 5.7038 18 7 5.0984 5.0762 6.3217 19 14 3.0666 6.8587 5.7136 20 1 1.7338 6.7053 6.3503 21 1 3.8707 7.8438 6.4805 22 1 2.8964 7.3371 4.3180 23 1 -0.3633 0.4805 0.9084 24 1 -0.3633 0.5465 -0.8703 25 1 -0.3633 -1.0270 -0.0381 26 1 1.3213 -0.7878 -2.0202 27 1 2.9941 -0.3241 -1.5801 28 1 4.2121 -2.3219 -1.6054 29 1 3.4272 -3.8656 -1.1936 30 1 2.8605 -2.9248 -2.5944 31 1 3.9357 -1.6792 0.5766 32 1 2.7468 -2.8383 1.2471 33 1 2.6225 1.0586 1.9915 34 1 1.9973 -0.3687 3.8568 35 1 3.4001 -1.3845 3.4460 36 1 4.0272 0.1571 5.2411 37 1 4.8815 0.6213 3.7502 38 1 4.2188 2.4531 6.0647 39 1 5.0726 2.9171 4.5734 40 1 5.4925 5.8332 6.7829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = -72.758355 kcal Electronic energy + Delta-G solvation = -17633.021710 eV Core-core repulsion = 14867.333934 eV Total energy + Delta-G solvation = -2765.687776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41228 -38.74010 -36.26576 -34.88998 -33.77965 -30.92607 -29.30451 -28.18618 -27.62576 -24.84640 -24.49195 -22.89806 -21.78467 -20.96954 -18.63682 -17.59667 -17.18633 -16.70798 -16.61270 -16.27919 -16.01108 -15.40142 -14.98784 -14.93720 -14.39345 -14.20008 -13.72287 -13.68117 -13.32590 -13.25626 -12.95251 -12.82042 -12.64829 -12.43968 -12.36655 -12.22368 -11.93530 -11.81447 -11.67047 -11.50874 -11.29717 -10.87332 -10.24598 -9.51318 -9.39714 -8.32593 -6.45376 1.39907 1.44686 1.53093 2.34223 2.91983 3.01327 3.19647 3.39188 3.58265 3.67103 4.03688 4.18875 4.31017 4.33336 4.47312 4.48285 4.55317 4.57028 4.59774 4.70699 4.75629 4.82756 4.87350 4.91806 4.94958 5.01016 5.02522 5.10631 5.16902 5.17863 5.35466 5.53721 5.74956 5.94730 6.02742 6.14726 6.37631 6.51988 6.80191 7.26584 8.79607 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.004141 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.902277 B = 6759.955011 C = 7213.889249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.073 0.927 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.013 3.987 7 C 0.045 3.955 8 C 0.084 3.916 9 H 0.054 0.946 10 N -0.689 5.689 11 C 0.077 3.923 12 C 0.055 3.945 13 O -0.408 6.408 14 C 0.211 3.789 15 C -0.549 4.549 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.265 1.265 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.346 0.654 34 H 0.034 0.966 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.042 0.958 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 -13.987 -13.909 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.092 0.908 4 C -0.086 4.086 5 N -0.247 5.247 6 C -0.135 4.135 7 C -0.084 4.084 8 C -0.026 4.026 9 H 0.072 0.928 10 N -0.322 5.322 11 C -0.053 4.053 12 C -0.022 4.022 13 O -0.328 6.328 14 C 0.136 3.864 15 C -0.587 4.587 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.189 1.189 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.201 -14.514 -14.071 21.144 hybrid contribution 0.325 1.436 0.802 1.676 sum -5.876 -13.078 -13.269 19.535 Atomic orbital electron populations 1.21761 0.93215 1.02309 1.01883 1.22094 0.97119 0.98870 0.93924 0.90819 1.23139 1.00093 0.88230 0.97094 1.65404 1.41308 1.15563 1.02473 1.22550 0.93715 0.99162 0.98081 1.23152 0.97088 0.97526 0.90593 1.22364 0.93129 0.93213 0.93871 0.92761 1.60620 1.54819 1.06641 1.10112 1.21940 0.97992 0.97810 0.87515 1.22596 0.96830 0.84195 0.98601 1.87747 1.49216 1.20360 1.75495 1.19788 0.90350 0.87280 0.88941 1.21366 1.07498 0.94979 1.34840 0.91857 1.25979 0.95741 1.03510 0.94020 1.70068 1.18753 1.33359 1.34872 0.85225 0.78378 0.76884 0.78873 1.18973 1.20051 1.18934 0.93417 0.91347 0.91862 0.88859 0.94064 0.95594 0.90580 0.90206 0.93516 0.89915 0.83498 0.94745 0.88022 0.93317 0.93966 0.99748 0.99803 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.90 71.98 0.64 -1.95 16 2 C -0.10 -2.21 3.33 -9.90 -0.03 -2.25 16 3 H 0.07 1.79 7.54 -2.39 -0.02 1.77 16 4 C 0.04 0.84 6.04 86.45 0.52 1.36 16 5 N -0.52 -10.60 5.66 -907.16 -5.13 -15.74 16 6 C 0.01 0.22 9.53 127.69 1.22 1.44 16 7 C 0.05 1.00 6.19 86.41 0.53 1.53 16 8 C 0.08 2.04 3.03 45.81 0.14 2.18 16 9 H 0.05 1.33 7.41 -2.39 -0.02 1.32 16 10 N -0.69 -20.30 6.28 -486.97 -3.06 -23.36 16 11 C 0.08 2.27 5.95 86.30 0.51 2.78 16 12 C 0.05 2.07 6.28 71.98 0.45 2.52 16 13 O -0.41 -19.90 9.85 -148.98 -1.47 -21.37 16 14 C 0.21 12.03 5.69 71.24 0.41 12.44 16 15 C -0.55 -32.86 9.43 25.60 0.24 -32.62 16 16 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 19 Si 0.98 44.38 29.54 68.60 2.03 46.41 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.58 7.86 -2.39 -0.02 1.56 16 27 H 0.04 0.85 7.97 -2.38 -0.02 0.83 16 28 H 0.03 0.44 7.98 -2.39 -0.02 0.42 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.35 11.56 7.64 -89.69 -0.69 10.87 16 34 H 0.03 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.68 323.73 -1.95 -66.64 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.30 Total: 15.31 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 5.09 Total: -11.75 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -7.91 Total: -95.24 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.47 Total: -21.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.68 -1.95 -66.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.123 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds