Wall clock time and date at job start Mon Mar 30 2020 04:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.28696 * 2 1 4 4 C 1.54382 * 110.41032 * 237.81643 * 2 1 3 5 5 N 1.48560 * 104.59464 * 217.20593 * 4 2 1 6 6 C 1.46902 * 111.00150 * 159.03593 * 5 4 2 7 7 C 1.48566 * 104.22033 * 39.48327 * 5 4 2 8 8 C 1.54263 * 110.32322 * 122.12805 * 2 1 3 9 9 H 1.09004 * 110.40716 * 237.93177 * 8 2 1 10 10 N 1.46894 * 110.32496 * 0.09899 * 8 2 1 11 11 C 1.46904 * 111.00004 * 192.58859 * 10 8 2 12 12 C 1.53005 * 109.46899 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47019 * 65.00248 * 12 11 10 14 14 C 1.42908 * 113.99567 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46801 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99842 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46925 * 90.00219 * 19 17 15 21 21 H 1.48497 * 109.47224 * 209.99924 * 19 17 15 22 22 H 1.48501 * 109.46872 * 330.00251 * 19 17 15 23 23 H 1.09000 * 109.46941 * 304.08965 * 1 2 3 24 24 H 1.09000 * 109.47142 * 64.08825 * 1 2 3 25 25 H 1.08998 * 109.46937 * 184.08967 * 1 2 3 26 26 H 1.08998 * 110.41406 * 98.42619 * 4 2 1 27 27 H 1.09001 * 110.41046 * 335.98297 * 4 2 1 28 28 H 1.09003 * 109.46996 * 304.58496 * 6 5 4 29 29 H 1.08998 * 109.46860 * 64.58006 * 6 5 4 30 30 H 1.08996 * 109.47317 * 184.57924 * 6 5 4 31 31 H 1.08999 * 110.41477 * 79.29598 * 7 5 4 32 32 H 1.08997 * 110.40794 * 201.61683 * 7 5 4 33 33 H 1.00896 * 110.99990 * 316.54783 * 10 8 2 34 34 H 1.09004 * 109.47129 * 299.99961 * 11 10 8 35 35 H 1.08993 * 109.46695 * 60.00314 * 11 10 8 36 36 H 1.08999 * 109.46782 * 185.00262 * 12 11 10 37 37 H 1.08996 * 109.46780 * 304.99762 * 12 11 10 38 38 H 1.08995 * 109.46547 * 299.99874 * 14 13 12 39 39 H 1.08999 * 109.47268 * 59.99980 * 14 13 12 40 40 H 0.97001 * 119.99497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 -1.2246 5 7 3.2721 -1.4806 -0.7205 6 6 3.6119 -2.6193 -1.5841 7 6 2.8828 -1.9401 0.6376 8 6 2.0657 -0.7693 1.2251 9 1 2.7064 -0.1255 1.8278 10 7 0.9512 -1.2802 2.0342 11 6 1.4232 -1.7497 3.3437 12 6 0.2369 -2.2737 4.1555 13 8 -0.3067 -3.4287 3.5133 14 6 -1.4255 -4.0000 4.1946 15 6 -1.9156 -5.2047 3.4332 16 1 -1.4223 -5.5038 2.5202 17 6 -2.9937 -5.9249 3.9022 18 7 -3.5947 -5.5602 5.0138 19 14 -3.6016 -7.4177 2.9581 20 1 -2.8965 -8.6311 3.4434 21 1 -5.0628 -7.5763 3.1703 22 1 -3.3289 -7.2324 1.5102 23 1 -0.3633 0.5760 0.8511 24 1 -0.3633 0.4491 -0.9243 25 1 -0.3633 -1.0250 0.0733 26 1 2.3412 -0.0774 -2.0202 27 1 1.3264 -1.4857 -1.5801 28 1 2.7485 -3.2788 -1.6724 29 1 3.8931 -2.2548 -2.5721 30 1 4.4462 -3.1692 -1.1488 31 1 2.2683 -2.8380 0.5736 32 1 3.7689 -2.1293 1.2434 33 1 0.2304 -0.5820 2.1386 34 1 2.1487 -2.5509 3.2026 35 1 1.8931 -0.9239 3.8779 36 1 0.5718 -2.5393 5.1582 37 1 -0.5284 -1.5003 4.2210 38 1 -1.1246 -4.3014 5.1978 39 1 -2.2255 -3.2626 4.2613 40 1 -4.3529 -6.0672 5.3439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722255463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:41 Heat of formation + Delta-G solvation = -40.536014 kcal Electronic energy + Delta-G solvation = -17893.594422 eV Core-core repulsion = 15129.303912 eV Total energy + Delta-G solvation = -2764.290510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50773 -36.90037 -35.12872 -32.93366 -32.39903 -29.51878 -27.97576 -26.86217 -26.00895 -24.02333 -22.29140 -21.80975 -20.87235 -19.37820 -16.49916 -16.30093 -15.91416 -15.62122 -14.95366 -14.75353 -14.56020 -14.23096 -14.06958 -13.35075 -13.10102 -12.74694 -12.44098 -12.30422 -12.07421 -11.79519 -11.52820 -11.37612 -11.19550 -11.01908 -10.82619 -10.78234 -10.66485 -10.60179 -10.35834 -9.93908 -9.05480 -8.77108 -8.56458 -8.17534 -8.09435 -6.07439 -4.08299 3.32323 3.37138 3.42995 3.89780 4.37899 4.47449 4.53748 4.58723 4.92820 4.98394 5.23967 5.29098 5.35211 5.40157 5.47757 5.50688 5.57567 5.62873 5.67282 5.77726 5.79926 5.87186 5.94331 6.04828 6.07624 6.10459 6.13416 6.32198 6.43252 6.71690 6.93322 7.14442 7.27297 7.47749 7.59021 7.84397 8.20883 8.65997 9.06496 9.56467 11.04286 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.004877 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.847061 B = 5739.295870 C = 6195.389089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.075 0.925 4 C 0.039 3.961 5 N -0.520 5.520 6 C 0.014 3.986 7 C 0.039 3.961 8 C 0.085 3.915 9 H 0.046 0.954 10 N -0.669 5.669 11 C 0.063 3.937 12 C 0.065 3.935 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.343 0.657 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 11.295 -9.047 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.090 4.090 5 N -0.244 5.244 6 C -0.135 4.135 7 C -0.089 4.089 8 C -0.025 4.025 9 H 0.063 0.937 10 N -0.304 5.304 11 C -0.066 4.066 12 C -0.013 4.013 13 O -0.300 6.300 14 C 0.119 3.881 15 C -0.548 4.548 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.974 10.875 -9.376 18.696 hybrid contribution -1.015 -0.411 0.386 1.161 sum 10.959 10.464 -8.989 17.618 Atomic orbital electron populations 1.21769 0.93905 1.03745 1.00889 1.21958 0.96470 0.98762 0.94022 0.90698 1.23167 0.91266 0.97443 0.97075 1.65365 1.33118 1.23133 1.02748 1.22489 1.00682 0.92789 0.97550 1.23180 0.98331 0.97657 0.89753 1.22187 0.91947 0.94377 0.94010 0.93656 1.60588 1.11113 1.42780 1.15902 1.22021 0.97259 0.98445 0.88893 1.22225 0.94394 0.90063 0.94593 1.87953 1.49554 1.41432 1.51016 1.20179 0.82745 0.92890 0.92271 1.21060 1.13805 1.10424 1.09529 0.91587 1.24944 0.96213 0.98117 0.95276 1.69971 1.22425 1.40294 1.21306 0.86355 0.77708 0.82314 0.80227 1.20511 1.21117 1.19652 0.92720 0.92963 0.90278 0.90566 0.93165 0.94955 0.91533 0.91400 0.91686 0.90751 0.83524 0.90489 0.94868 0.94249 0.94870 0.98032 0.97916 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.85 37.16 0.29 -1.32 16 2 C -0.09 -1.03 3.65 -89.24 -0.33 -1.35 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.04 0.43 6.04 -2.18 -0.01 0.42 16 5 N -0.52 -6.29 5.66 -238.23 -1.35 -7.64 16 6 C 0.01 0.15 9.53 60.07 0.57 0.72 16 7 C 0.04 0.51 5.64 -2.18 -0.01 0.50 16 8 C 0.09 1.07 3.34 -66.33 -0.22 0.85 16 9 H 0.05 0.55 8.02 -51.93 -0.42 0.13 16 10 N -0.67 -9.74 5.19 -105.26 -0.55 -10.29 16 11 C 0.06 0.94 5.91 -3.82 -0.02 0.92 16 12 C 0.07 1.22 6.22 37.16 0.23 1.45 16 13 O -0.38 -9.31 10.27 -35.23 -0.36 -9.67 16 14 C 0.19 5.40 5.69 36.01 0.20 5.61 16 15 C -0.51 -15.28 9.43 -34.44 -0.32 -15.61 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 19 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.57 7.07 -51.93 -0.37 0.20 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 1.08 7.55 -51.93 -0.39 0.69 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.60 7.63 -51.93 -0.40 0.21 16 28 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.34 4.71 6.37 -39.29 -0.25 4.46 16 34 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 35 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.46 319.90 -8.68 -40.14 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.24 Total: -1.66 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.28 Total: -6.29 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.16 Total: -44.47 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.36 Total: -9.67 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.46 -8.68 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.397 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds