Wall clock time and date at job start Mon Mar 30 2020 04:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.28696 * 2 1 4 4 C 1.54382 * 110.41032 * 237.81643 * 2 1 3 5 5 N 1.48560 * 104.59464 * 217.20593 * 4 2 1 6 6 C 1.46902 * 111.00150 * 159.03593 * 5 4 2 7 7 C 1.48566 * 104.22033 * 39.48327 * 5 4 2 8 8 C 1.54263 * 110.32322 * 122.12805 * 2 1 3 9 9 H 1.09004 * 110.40716 * 237.93177 * 8 2 1 10 10 N 1.46894 * 110.32496 * 0.09899 * 8 2 1 11 11 C 1.46904 * 111.00004 * 192.58859 * 10 8 2 12 12 C 1.53005 * 109.46899 * 180.02562 * 11 10 8 13 13 O 1.42898 * 109.47019 * 65.00248 * 12 11 10 14 14 C 1.42908 * 113.99567 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46801 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99842 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99790 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46925 * 90.00219 * 19 17 15 21 21 H 1.48497 * 109.47224 * 209.99924 * 19 17 15 22 22 H 1.48501 * 109.46872 * 330.00251 * 19 17 15 23 23 H 1.09000 * 109.46941 * 304.08965 * 1 2 3 24 24 H 1.09000 * 109.47142 * 64.08825 * 1 2 3 25 25 H 1.08998 * 109.46937 * 184.08967 * 1 2 3 26 26 H 1.08998 * 110.41406 * 98.42619 * 4 2 1 27 27 H 1.09001 * 110.41046 * 335.98297 * 4 2 1 28 28 H 1.09003 * 109.46996 * 304.58496 * 6 5 4 29 29 H 1.08998 * 109.46860 * 64.58006 * 6 5 4 30 30 H 1.08996 * 109.47317 * 184.57924 * 6 5 4 31 31 H 1.08999 * 110.41477 * 79.29598 * 7 5 4 32 32 H 1.08997 * 110.40794 * 201.61683 * 7 5 4 33 33 H 1.00896 * 110.99990 * 316.54783 * 10 8 2 34 34 H 1.09004 * 109.47129 * 299.99961 * 11 10 8 35 35 H 1.08993 * 109.46695 * 60.00314 * 11 10 8 36 36 H 1.08999 * 109.46782 * 185.00262 * 12 11 10 37 37 H 1.08996 * 109.46780 * 304.99762 * 12 11 10 38 38 H 1.08995 * 109.46547 * 299.99874 * 14 13 12 39 39 H 1.08999 * 109.47268 * 59.99980 * 14 13 12 40 40 H 0.97001 * 119.99497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 -1.2246 5 7 3.2721 -1.4806 -0.7205 6 6 3.6119 -2.6193 -1.5841 7 6 2.8828 -1.9401 0.6376 8 6 2.0657 -0.7693 1.2251 9 1 2.7064 -0.1255 1.8278 10 7 0.9512 -1.2802 2.0342 11 6 1.4232 -1.7497 3.3437 12 6 0.2369 -2.2737 4.1555 13 8 -0.3067 -3.4287 3.5133 14 6 -1.4255 -4.0000 4.1946 15 6 -1.9156 -5.2047 3.4332 16 1 -1.4223 -5.5038 2.5202 17 6 -2.9937 -5.9249 3.9022 18 7 -3.5947 -5.5602 5.0138 19 14 -3.6016 -7.4177 2.9581 20 1 -2.8965 -8.6311 3.4434 21 1 -5.0628 -7.5763 3.1703 22 1 -3.3289 -7.2324 1.5102 23 1 -0.3633 0.5760 0.8511 24 1 -0.3633 0.4491 -0.9243 25 1 -0.3633 -1.0250 0.0733 26 1 2.3412 -0.0774 -2.0202 27 1 1.3264 -1.4857 -1.5801 28 1 2.7485 -3.2788 -1.6724 29 1 3.8931 -2.2548 -2.5721 30 1 4.4462 -3.1692 -1.1488 31 1 2.2683 -2.8380 0.5736 32 1 3.7689 -2.1293 1.2434 33 1 0.2304 -0.5820 2.1386 34 1 2.1487 -2.5509 3.2026 35 1 1.8931 -0.9239 3.8779 36 1 0.5718 -2.5393 5.1582 37 1 -0.5284 -1.5003 4.2210 38 1 -1.1246 -4.3014 5.1978 39 1 -2.2255 -3.2626 4.2613 40 1 -4.3529 -6.0672 5.3439 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:41 Heat of formation + Delta-G solvation = -63.824914 kcal Electronic energy + Delta-G solvation = -17894.604305 eV Core-core repulsion = 15129.303912 eV Total energy + Delta-G solvation = -2765.300393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49089 -38.63741 -36.37952 -34.90352 -33.67841 -30.80427 -29.44099 -28.44139 -27.18858 -24.99532 -24.46965 -23.10767 -21.93050 -20.35325 -18.63697 -17.54545 -17.37320 -16.93885 -16.54036 -16.22795 -15.82541 -15.55071 -15.23735 -14.91418 -14.42773 -14.04520 -13.72338 -13.56618 -13.31529 -13.09371 -12.87642 -12.85873 -12.60058 -12.42972 -12.33183 -12.29694 -12.00950 -11.72500 -11.60098 -11.45439 -11.25272 -10.85998 -10.18349 -9.54549 -9.25376 -8.32103 -6.43878 1.38736 1.41610 1.53746 2.34662 2.91061 3.01548 3.24171 3.44073 3.61747 3.64948 4.06907 4.23261 4.27317 4.35741 4.41044 4.52318 4.56271 4.58167 4.61708 4.68344 4.76025 4.81879 4.86939 4.87884 4.95535 4.99049 5.01079 5.10721 5.19890 5.23333 5.49581 5.55332 5.74777 5.97762 5.99650 6.17846 6.49680 6.58593 6.87072 7.28463 8.80301 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.004877 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.847061 B = 5739.295870 C = 6195.389089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.522 5.522 6 C 0.013 3.987 7 C 0.041 3.959 8 C 0.087 3.913 9 H 0.059 0.941 10 N -0.688 5.688 11 C 0.074 3.926 12 C 0.055 3.945 13 O -0.396 6.396 14 C 0.209 3.791 15 C -0.546 4.546 16 H 0.057 0.943 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.981 3.019 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.267 1.267 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.036 0.964 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.347 0.653 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.040 0.960 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 11.859 -10.017 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.113 0.887 4 C -0.091 4.091 5 N -0.245 5.245 6 C -0.136 4.136 7 C -0.088 4.088 8 C -0.023 4.023 9 H 0.077 0.923 10 N -0.323 5.323 11 C -0.055 4.055 12 C -0.022 4.022 13 O -0.316 6.316 14 C 0.134 3.866 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.191 1.191 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.546 11.461 -10.344 19.893 hybrid contribution -1.144 -0.516 0.709 1.442 sum 11.401 10.944 -9.636 18.510 Atomic orbital electron populations 1.21690 0.94116 1.01949 1.02007 1.21981 0.96216 0.99475 0.93073 0.88696 1.23234 0.90702 0.97421 0.97701 1.65406 1.33246 1.23470 1.02407 1.22542 1.00328 0.92400 0.98299 1.23123 0.98063 0.96776 0.90846 1.22224 0.91411 0.94286 0.94406 0.92322 1.60532 1.12245 1.43644 1.15895 1.21908 0.95255 0.99181 0.89203 1.22588 0.95753 0.88289 0.95556 1.87912 1.48438 1.43649 1.51567 1.19791 0.83261 0.92207 0.91387 1.21365 1.15072 1.11962 1.09920 0.92423 1.25933 0.95818 1.01235 0.96121 1.70070 1.22750 1.41640 1.22554 0.85212 0.77619 0.78031 0.78726 1.19234 1.19737 1.19112 0.92006 0.91488 0.93406 0.88649 0.94549 0.96197 0.89739 0.90892 0.94858 0.90333 0.83062 0.91340 0.91392 0.93512 0.94184 0.99892 0.99830 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 7.85 71.98 0.57 -2.39 16 2 C -0.09 -1.79 3.65 -9.90 -0.04 -1.83 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.04 0.79 6.04 86.45 0.52 1.31 16 5 N -0.52 -11.97 5.66 -907.61 -5.14 -17.11 16 6 C 0.01 0.27 9.53 127.69 1.22 1.48 16 7 C 0.04 1.05 5.64 86.45 0.49 1.54 16 8 C 0.09 2.06 3.34 45.81 0.15 2.21 16 9 H 0.06 1.26 8.02 -2.39 -0.02 1.24 16 10 N -0.69 -19.61 5.19 -486.94 -2.53 -22.14 16 11 C 0.07 2.14 5.91 86.30 0.51 2.65 16 12 C 0.06 2.07 6.22 71.98 0.45 2.51 16 13 O -0.40 -19.92 10.27 -148.98 -1.53 -21.45 16 14 C 0.21 12.05 5.69 71.24 0.41 12.46 16 15 C -0.55 -33.42 9.43 25.60 0.24 -33.18 16 16 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 19 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H 0.06 1.20 7.07 -2.39 -0.02 1.18 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.32 7.55 -2.39 -0.02 1.30 16 26 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 0.86 7.63 -2.39 -0.02 0.84 16 28 H 0.02 0.45 7.97 -2.39 -0.02 0.43 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.07 7.88 -2.39 -0.02 1.05 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.35 9.26 6.37 -89.70 -0.57 8.69 16 34 H 0.07 2.11 7.74 -2.39 -0.02 2.10 16 35 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -67.90 319.90 -1.50 -69.40 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.41 Total: 12.84 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.97 Total: -12.36 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -7.38 Total: -95.72 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.53 Total: -21.45 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.90 -1.50 -69.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.572 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds